Abstract
In the title compound, C16H14N4O2S, intramolecular N—H⋯N hydrogen bonding forms an S(5) ring, whereas N—H⋯O and C—H⋯S interactions complete S(6) ring motifs. In the crystal, molecules form inversion dimers due to N—H⋯O interactions. The dimers are interlinked through N—H⋯S hydrogen bonds and π–π interactions occur with a centroid–centroid distance of 3.8422 (11) Å between the methoxy-containing benzene ring and the five-membered heterocyclic ring.
Related literature
For the preparation and structures of biologically important N
4-aryl-substituted isatin-3-thiosemicarbazones, see: Pervez et al. (2007 ▶, 2008 ▶, 2009 ▶, 2010a
▶). For a related structure, see: Pervez et al. (2010b
▶). For graph-set notation, see: Bernstein et al. (1995 ▶).
Experimental
Crystal data
C16H14N4O2S
M r = 326.37
Monoclinic,
a = 15.1793 (5) Å
b = 7.2473 (2) Å
c = 15.4764 (5) Å
β = 111.179 (2)°
V = 1587.55 (9) Å3
Z = 4
Mo Kα radiation
μ = 0.22 mm−1
T = 296 K
0.34 × 0.22 × 0.20 mm
Data collection
Bruker Kappa APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.946, T max = 0.960
13861 measured reflections
3925 independent reflections
2898 reflections with I > 2σ(I)
R int = 0.028
Refinement
R[F 2 > 2σ(F 2)] = 0.044
wR(F 2) = 0.125
S = 1.04
3925 reflections
209 parameters
H-atom parameters constrained
Δρmax = 0.36 e Å−3
Δρmin = −0.35 e Å−3
Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810018052/si2262sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810018052/si2262Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1⋯O1i | 0.86 | 2.04 | 2.875 (2) | 164 |
| N3—H3A⋯O1 | 0.86 | 2.06 | 2.7441 (19) | 136 |
| N4—H4A⋯N2 | 0.86 | 2.19 | 2.620 (2) | 110 |
| N4—H4A⋯S1ii | 0.86 | 2.87 | 3.5806 (16) | 141 |
| C11—H11⋯S1 | 0.93 | 2.74 | 3.212 (2) | 112 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
HP, MSI and NS thank the Higher Education Commission (HEC), Pakistan, for financial assistance under the National Research Program for Universities (project No. 20–873/R&D/07/452).
supplementary crystallographic information
Comment
In continuation of our work on the synthesis of medicinally important organic molecules (Pervez et al., 2007, 2008, 2009, 2010a), we report herein the structure and synthesis of the title compound (I, Fig. 1).
The crystal structure of (II) i.e. 4-(2-fluorophenyl)-1-(2-oxoindolin-3-ylidene)thiosemicarbazide has been published (Pervez et al., 2010b). The title compound (I) differs from (II) due to the attachment of methoxy group at position-3 instead of fluoro at position-2 of the phenyl ring substituted at N^4^ of the thiosemicarbazone moiety.
In (I) the 2-oxoindolin A (C1–C8/N1/O1), thiosemicarbazide B (N2/N3/C9/S1/N4) and the 3-methoxyphenyl C (C10—C16/O2) are planar with r. m. s. deviations of 0.0178, 0.0244 and 0.0149 Å, respectively. The dihedral angle between A/B, A/C and B/C is 8.71 (5)°, 33.59 (3)° and 39.32 (3)°, respectively. Due to intramolecular H-bondings (Table 1, Fig. 1), one S(5) and two S(6) (Bernstein et al., 1995) ring motifs are formed. The molecules are dimerised (Fig. 2) due to intermolecular H-bonding of N—H···O type with R22(8) ring motifs. The dimers are interlinked through N—H···S type of H-bonding. There exist π···π interaction at a distance of 3.8422 (11) Å between the benzene ring (C10—C15) and the heterocyclic ring (N1/C7/C2/C1/C8).
Experimental
To a hot solution of isatin (0.74 g, 5.0 mmol) in ethanol (10 ml) containing a few drops of glacial acetic acid was added 4-(3-methoxyphenyl)thiosemicarbazide (0.99 g, 5.0 mmol) dissolved in ethanol (10 ml) under stirring. The reaction mixture was then heated under reflux for 2 h. The yellow crystalline solid formed during refluxing was collected by suction filtration. Thorough washing with hot ethanol followed by ether afforded the target compound (I) in pure form (1.25 g, 77%), m. p. 477 K (d). The single crystals of (I) were grown in acetone by slow evaporation at room temperature.
Figures
Fig. 1.
View of the title compound with the atom numbering scheme. The thermal ellipsoids are drawn at the 50% probability level. H-atoms are shown by small circles of arbitrary radii. The dotted lines indicate the intra-molecular H-bondings.
Fig. 2.
The partial packing (PLATON; Spek, 2009) which shows that molecules form dimers which are interlinked.
Crystal data
| C16H14N4O2S | F(000) = 680 |
| Mr = 326.37 | Dx = 1.366 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 2898 reflections |
| a = 15.1793 (5) Å | θ = 3.2–28.3° |
| b = 7.2473 (2) Å | µ = 0.22 mm−1 |
| c = 15.4764 (5) Å | T = 296 K |
| β = 111.179 (2)° | Prism, yellow |
| V = 1587.55 (9) Å3 | 0.34 × 0.22 × 0.20 mm |
| Z = 4 |
Data collection
| Bruker Kappa APEXII CCD diffractometer | 3925 independent reflections |
| Radiation source: fine-focus sealed tube | 2898 reflections with I > 2σ(I) |
| graphite | Rint = 0.028 |
| Detector resolution: 7.40 pixels mm-1 | θmax = 28.3°, θmin = 3.2° |
| ω scans | h = −20→20 |
| Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −9→9 |
| Tmin = 0.946, Tmax = 0.960 | l = −20→19 |
| 13861 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.125 | H-atom parameters constrained |
| S = 1.04 | w = 1/[σ2(Fo2) + (0.0539P)2 + 0.6227P] where P = (Fo2 + 2Fc2)/3 |
| 3925 reflections | (Δ/σ)max < 0.001 |
| 209 parameters | Δρmax = 0.36 e Å−3 |
| 0 restraints | Δρmin = −0.35 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.19826 (11) | 0.3610 (2) | 0.45348 (11) | 0.0329 (3) | |
| C2 | 0.26044 (11) | 0.3126 (2) | 0.54720 (11) | 0.0345 (3) | |
| C3 | 0.35347 (12) | 0.2547 (3) | 0.58412 (12) | 0.0434 (4) | |
| H3 | 0.3882 | 0.2332 | 0.5464 | 0.052* | |
| C4 | 0.39313 (14) | 0.2298 (3) | 0.67919 (13) | 0.0515 (5) | |
| H4 | 0.4555 | 0.1908 | 0.7057 | 0.062* | |
| C5 | 0.34181 (15) | 0.2617 (3) | 0.73516 (13) | 0.0529 (5) | |
| H5 | 0.3705 | 0.2446 | 0.7988 | 0.063* | |
| C6 | 0.24859 (14) | 0.3187 (3) | 0.69884 (12) | 0.0491 (5) | |
| H6 | 0.2140 | 0.3403 | 0.7367 | 0.059* | |
| C7 | 0.20928 (11) | 0.3419 (2) | 0.60448 (11) | 0.0382 (4) | |
| C8 | 0.10524 (11) | 0.4125 (2) | 0.46058 (11) | 0.0359 (4) | |
| C9 | 0.17432 (11) | 0.4498 (2) | 0.22293 (11) | 0.0360 (4) | |
| C10 | 0.30202 (12) | 0.3962 (2) | 0.16100 (12) | 0.0388 (4) | |
| C11 | 0.24941 (12) | 0.3445 (2) | 0.07119 (12) | 0.0407 (4) | |
| H11 | 0.1865 | 0.3103 | 0.0552 | 0.049* | |
| C12 | 0.29128 (13) | 0.3440 (3) | 0.00497 (13) | 0.0446 (4) | |
| C13 | 0.38568 (14) | 0.3931 (3) | 0.02993 (15) | 0.0539 (5) | |
| H13 | 0.4139 | 0.3948 | −0.0143 | 0.065* | |
| C14 | 0.43705 (14) | 0.4392 (3) | 0.11998 (16) | 0.0554 (5) | |
| H14 | 0.5006 | 0.4689 | 0.1366 | 0.066* | |
| C15 | 0.39605 (13) | 0.4423 (3) | 0.18678 (14) | 0.0477 (4) | |
| H15 | 0.4313 | 0.4748 | 0.2476 | 0.057* | |
| C16 | 0.14733 (15) | 0.2526 (3) | −0.11290 (15) | 0.0613 (6) | |
| H16A | 0.1142 | 0.3578 | −0.1023 | 0.092* | |
| H16B | 0.1387 | 0.1496 | −0.0777 | 0.092* | |
| H16C | 0.1230 | 0.2222 | −0.1776 | 0.092* | |
| N1 | 0.11680 (10) | 0.3984 (2) | 0.55058 (10) | 0.0429 (4) | |
| H1 | 0.0733 | 0.4210 | 0.5725 | 0.051* | |
| N2 | 0.22156 (9) | 0.36975 (19) | 0.38155 (9) | 0.0351 (3) | |
| N3 | 0.15482 (9) | 0.4293 (2) | 0.30214 (9) | 0.0374 (3) | |
| H3A | 0.0992 | 0.4548 | 0.3013 | 0.045* | |
| N4 | 0.26118 (10) | 0.3955 (2) | 0.23067 (10) | 0.0416 (4) | |
| H4A | 0.2966 | 0.3552 | 0.2842 | 0.050* | |
| O1 | 0.03312 (8) | 0.45962 (19) | 0.39631 (8) | 0.0452 (3) | |
| O2 | 0.24526 (10) | 0.2944 (2) | −0.08484 (9) | 0.0610 (4) | |
| S1 | 0.09025 (3) | 0.53985 (8) | 0.13109 (3) | 0.04856 (16) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0311 (7) | 0.0360 (8) | 0.0318 (8) | 0.0010 (6) | 0.0115 (6) | −0.0041 (6) |
| C2 | 0.0357 (8) | 0.0370 (9) | 0.0304 (8) | 0.0024 (6) | 0.0115 (6) | −0.0028 (6) |
| C3 | 0.0409 (9) | 0.0480 (10) | 0.0403 (9) | 0.0111 (7) | 0.0136 (7) | −0.0015 (8) |
| C4 | 0.0456 (10) | 0.0572 (12) | 0.0423 (10) | 0.0146 (9) | 0.0045 (8) | 0.0006 (9) |
| C5 | 0.0585 (12) | 0.0603 (12) | 0.0312 (9) | 0.0100 (9) | 0.0060 (8) | 0.0039 (8) |
| C6 | 0.0547 (11) | 0.0628 (12) | 0.0320 (9) | 0.0061 (9) | 0.0182 (8) | −0.0004 (8) |
| C7 | 0.0370 (8) | 0.0444 (9) | 0.0329 (8) | 0.0019 (7) | 0.0123 (7) | −0.0013 (7) |
| C8 | 0.0306 (7) | 0.0442 (9) | 0.0335 (8) | −0.0012 (6) | 0.0121 (6) | −0.0050 (7) |
| C9 | 0.0361 (8) | 0.0396 (9) | 0.0331 (8) | −0.0034 (7) | 0.0136 (7) | −0.0010 (7) |
| C10 | 0.0408 (9) | 0.0398 (9) | 0.0411 (9) | 0.0054 (7) | 0.0211 (7) | 0.0075 (7) |
| C11 | 0.0412 (9) | 0.0431 (10) | 0.0421 (9) | 0.0028 (7) | 0.0200 (7) | 0.0032 (7) |
| C12 | 0.0518 (10) | 0.0442 (10) | 0.0445 (10) | 0.0062 (8) | 0.0253 (8) | 0.0032 (8) |
| C13 | 0.0548 (11) | 0.0636 (13) | 0.0570 (12) | 0.0033 (10) | 0.0367 (10) | 0.0059 (10) |
| C14 | 0.0414 (10) | 0.0658 (13) | 0.0656 (13) | −0.0035 (9) | 0.0272 (10) | 0.0046 (10) |
| C15 | 0.0415 (9) | 0.0565 (12) | 0.0465 (10) | 0.0005 (8) | 0.0174 (8) | 0.0036 (9) |
| C16 | 0.0634 (13) | 0.0705 (15) | 0.0487 (12) | −0.0020 (11) | 0.0187 (10) | −0.0053 (10) |
| N1 | 0.0337 (7) | 0.0646 (10) | 0.0332 (7) | 0.0050 (7) | 0.0154 (6) | −0.0018 (7) |
| N2 | 0.0345 (7) | 0.0396 (8) | 0.0317 (7) | 0.0018 (6) | 0.0124 (6) | −0.0014 (6) |
| N3 | 0.0303 (6) | 0.0520 (9) | 0.0304 (7) | 0.0027 (6) | 0.0114 (5) | 0.0015 (6) |
| N4 | 0.0355 (7) | 0.0579 (10) | 0.0330 (7) | 0.0072 (6) | 0.0143 (6) | 0.0079 (6) |
| O1 | 0.0303 (6) | 0.0680 (9) | 0.0342 (6) | 0.0061 (5) | 0.0081 (5) | −0.0031 (6) |
| O2 | 0.0614 (9) | 0.0838 (11) | 0.0445 (8) | 0.0019 (8) | 0.0272 (7) | −0.0089 (7) |
| S1 | 0.0377 (2) | 0.0708 (4) | 0.0363 (2) | 0.0074 (2) | 0.01228 (18) | 0.0104 (2) |
Geometric parameters (Å, °)
| C1—N2 | 1.286 (2) | C10—C11 | 1.381 (2) |
| C1—C2 | 1.459 (2) | C10—N4 | 1.425 (2) |
| C1—C8 | 1.503 (2) | C11—C12 | 1.387 (2) |
| C2—C3 | 1.383 (2) | C11—H11 | 0.9300 |
| C2—C7 | 1.390 (2) | C12—O2 | 1.359 (2) |
| C3—C4 | 1.386 (3) | C12—C13 | 1.389 (3) |
| C3—H3 | 0.9300 | C13—C14 | 1.370 (3) |
| C4—C5 | 1.378 (3) | C13—H13 | 0.9300 |
| C4—H4 | 0.9300 | C14—C15 | 1.386 (3) |
| C5—C6 | 1.384 (3) | C14—H14 | 0.9300 |
| C5—H5 | 0.9300 | C15—H15 | 0.9300 |
| C6—C7 | 1.374 (2) | C16—O2 | 1.422 (3) |
| C6—H6 | 0.9300 | C16—H16A | 0.9600 |
| C7—N1 | 1.410 (2) | C16—H16B | 0.9600 |
| C8—O1 | 1.2319 (19) | C16—H16C | 0.9600 |
| C8—N1 | 1.343 (2) | N1—H1 | 0.8600 |
| C9—N4 | 1.339 (2) | N2—N3 | 1.3504 (18) |
| C9—N3 | 1.369 (2) | N3—H3A | 0.8600 |
| C9—S1 | 1.6624 (17) | N4—H4A | 0.8600 |
| C10—C15 | 1.377 (2) | ||
| N2—C1—C2 | 126.25 (14) | C10—C11—H11 | 120.3 |
| N2—C1—C8 | 127.64 (14) | C12—C11—H11 | 120.3 |
| C2—C1—C8 | 105.94 (13) | O2—C12—C11 | 123.55 (17) |
| C3—C2—C7 | 120.33 (15) | O2—C12—C13 | 116.72 (17) |
| C3—C2—C1 | 132.91 (15) | C11—C12—C13 | 119.72 (18) |
| C7—C2—C1 | 106.72 (13) | C14—C13—C12 | 119.75 (18) |
| C2—C3—C4 | 117.73 (17) | C14—C13—H13 | 120.1 |
| C2—C3—H3 | 121.1 | C12—C13—H13 | 120.1 |
| C4—C3—H3 | 121.1 | C13—C14—C15 | 121.26 (18) |
| C5—C4—C3 | 121.22 (17) | C13—C14—H14 | 119.4 |
| C5—C4—H4 | 119.4 | C15—C14—H14 | 119.4 |
| C3—C4—H4 | 119.4 | C10—C15—C14 | 118.52 (18) |
| C4—C5—C6 | 121.48 (17) | C10—C15—H15 | 120.7 |
| C4—C5—H5 | 119.3 | C14—C15—H15 | 120.7 |
| C6—C5—H5 | 119.3 | O2—C16—H16A | 109.5 |
| C7—C6—C5 | 117.13 (17) | O2—C16—H16B | 109.5 |
| C7—C6—H6 | 121.4 | H16A—C16—H16B | 109.5 |
| C5—C6—H6 | 121.4 | O2—C16—H16C | 109.5 |
| C6—C7—C2 | 122.09 (16) | H16A—C16—H16C | 109.5 |
| C6—C7—N1 | 128.44 (16) | H16B—C16—H16C | 109.5 |
| C2—C7—N1 | 109.47 (14) | C8—N1—C7 | 111.39 (14) |
| O1—C8—N1 | 127.11 (15) | C8—N1—H1 | 124.3 |
| O1—C8—C1 | 126.47 (15) | C7—N1—H1 | 124.3 |
| N1—C8—C1 | 106.42 (13) | C1—N2—N3 | 116.95 (13) |
| N4—C9—N3 | 114.35 (14) | N2—N3—C9 | 121.05 (13) |
| N4—C9—S1 | 128.21 (13) | N2—N3—H3A | 119.5 |
| N3—C9—S1 | 117.43 (12) | C9—N3—H3A | 119.5 |
| C15—C10—C11 | 121.28 (16) | C9—N4—C10 | 127.93 (14) |
| C15—C10—N4 | 118.06 (16) | C9—N4—H4A | 116.0 |
| C11—C10—N4 | 120.61 (15) | C10—N4—H4A | 116.0 |
| C10—C11—C12 | 119.44 (16) | C12—O2—C16 | 117.57 (15) |
| N2—C1—C2—C3 | −4.6 (3) | C10—C11—C12—C13 | 0.8 (3) |
| C8—C1—C2—C3 | 179.95 (19) | O2—C12—C13—C14 | −178.02 (19) |
| N2—C1—C2—C7 | 172.98 (16) | C11—C12—C13—C14 | 0.9 (3) |
| C8—C1—C2—C7 | −2.51 (18) | C12—C13—C14—C15 | −1.6 (3) |
| C7—C2—C3—C4 | −0.8 (3) | C11—C10—C15—C14 | 1.2 (3) |
| C1—C2—C3—C4 | 176.49 (19) | N4—C10—C15—C14 | 178.50 (17) |
| C2—C3—C4—C5 | 0.0 (3) | C13—C14—C15—C10 | 0.6 (3) |
| C3—C4—C5—C6 | 0.4 (3) | O1—C8—N1—C7 | −179.55 (17) |
| C4—C5—C6—C7 | 0.1 (3) | C1—C8—N1—C7 | 0.0 (2) |
| C5—C6—C7—C2 | −0.9 (3) | C6—C7—N1—C8 | 177.47 (19) |
| C5—C6—C7—N1 | −179.92 (19) | C2—C7—N1—C8 | −1.6 (2) |
| C3—C2—C7—C6 | 1.3 (3) | C2—C1—N2—N3 | −175.68 (15) |
| C1—C2—C7—C6 | −176.60 (17) | C8—C1—N2—N3 | −1.2 (2) |
| C3—C2—C7—N1 | −179.52 (16) | C1—N2—N3—C9 | 177.49 (15) |
| C1—C2—C7—N1 | 2.6 (2) | N4—C9—N3—N2 | 3.9 (2) |
| N2—C1—C8—O1 | 5.7 (3) | S1—C9—N3—N2 | −175.20 (12) |
| C2—C1—C8—O1 | −178.91 (17) | N3—C9—N4—C10 | 178.85 (16) |
| N2—C1—C8—N1 | −173.84 (17) | S1—C9—N4—C10 | −2.1 (3) |
| C2—C1—C8—N1 | 1.57 (19) | C15—C10—N4—C9 | 142.08 (19) |
| C15—C10—C11—C12 | −1.8 (3) | C11—C10—N4—C9 | −40.6 (3) |
| N4—C10—C11—C12 | −179.12 (16) | C11—C12—O2—C16 | 4.2 (3) |
| C10—C11—C12—O2 | 179.65 (17) | C13—C12—O2—C16 | −176.89 (19) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···O1i | 0.86 | 2.04 | 2.875 (2) | 164 |
| N3—H3A···O1 | 0.86 | 2.06 | 2.7441 (19) | 136 |
| N4—H4A···N2 | 0.86 | 2.19 | 2.620 (2) | 110 |
| N4—H4A···S1ii | 0.86 | 2.87 | 3.5806 (16) | 141 |
| C11—H11···S1 | 0.93 | 2.74 | 3.212 (2) | 112 |
| C8—O1···Cg3iii | 1.2319 (19) | 3.6366 (1) | 3.7399 (17) | 85.16 (10) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+1/2, y−1/2, −z+1/2; (iii) −x+1/2, y+1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SI2262).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810018052/si2262sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810018052/si2262Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


