Abstract
In the title half-sandwich compound, [Ni(C6H15N3)(H2O)3]Br(NO3), the central NiII ion, lying on a threefold rotation axis, is six-coordinated by three amine N atoms from the face-capping triaza macrocycle and three water O atoms in a slightly distorted octahedral geometry. In the crystal, O—H⋯O hydrogen bonding and weak O—H⋯Br interactions associate the NiII cations and the counter-ions into a three-dimensional supramolecular network.
Related literature
For the preparation of 1,4,7-triazacyclononane trihydrobromide, see: Koyama & Yoshino (1972 ▶). For the applications of metal complexes containing 1,4,7-triazacyclononane as small-molecule models of metalloenzymes and metalloproteins and as molecule-based magnets, see: Berseth et al. (2000 ▶); Chaudhury et al. (1985 ▶); Cheng et al. (2004 ▶); Deal et al. (1996 ▶); Hegg & Burstyn (1995 ▶); Hegg et al. (1997 ▶); Lin et al. (2001 ▶); Poganiuch et al. (1991 ▶); Williams et al. (1999 ▶). For related NiII complexes with 1,4,7-triazacyclononane, see: Bencini et al. (1990 ▶); Stranger et al. (1992 ▶); Wang et al. (2003 ▶, 2005 ▶); Zompa & Margulis (1978 ▶).
Experimental
Crystal data
[Ni(C6H15N3)(H2O)3]Br(NO3)
M r = 383.89
Cubic,
a = 11.300 (1) Å
V = 1442.9 (3) Å3
Z = 4
Mo Kα radiation
μ = 4.14 mm−1
T = 298 K
0.29 × 0.27 × 0.18 mm
Data collection
Bruker APEXII CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.320, T max = 0.480
15223 measured reflections
1110 independent reflections
985 reflections with I > 2σ(I)
R int = 0.080
Refinement
R[F 2 > 2σ(F 2)] = 0.035
wR(F 2) = 0.072
S = 1.03
1110 reflections
61 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.36 e Å−3
Δρmin = −0.47 e Å−3
Absolute structure: Flack (1983 ▶), 475 Friedel pairs
Flack parameter: 0.01 (3)
Data collection: APEX2 (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681001620X/pb2027sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053681001620X/pb2027Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H4A⋯O2i | 0.84 (4) | 1.95 (5) | 2.776 (5) | 162 (4) |
| O1—H4B⋯Br1ii | 0.85 (5) | 2.48 (5) | 3.312 (3) | 167 (4) |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors are grateful for financial support from the Guangxi Science Foundation (grant No. 0832023) and the Scientific Research Foundation of Guangxi Normal University.
supplementary crystallographic information
Comment
The coordination chemistry of 1,4,7–triazacyclononane (TACN) has been extensively studied for its applications in the simulation of metalloenzymes and metalloproteins (Chaudhury et al., 1985; Deal et al., 1996; Hegg & Burstyn, 1995; Hegg et al., 1997; Lin et al., 2001; Williams et al., 1999) as well as in constructing molecule–based magnetic materials (Berseth et al., 2000; Cheng et al., 2004; Poganiuch et al., 1991). In general, TACN ligand can form stable sandwich complexes with many transition metals (Stranger et al., 1992; Zompa & Margulis, 1978) or functions as a terminal chelator for the assembly of binuclear/polynuclear species and coordination polymers supported by bridging ligands (Bencini et al., 1990; Wang et al., 2005; Wang et al., 2003). In this paper, a half–sandwich type NiII complex with TACN has been synthesized and characterized.
In the selected crystal, the title compound (I) crystallizes in a chiral space group P213 and Flack parameter of 0.01 (3) indicates that a spontaneous resolution has been achieved during crystallization. As depicted in Fig. 1, the NiII center in the complex cation lies on a three–fold rotation axis and three amine N atoms from facially coordinated TACN and three water molecules complete the slightly distorted octahedral arrangement. Upon coordination, three five–membered Ni—N—C—C—N chelating rings subtended at metal center adopt (λλλ) conformation, which is the source of the chirality of the crystal. Ni—N [2.091 (3) Å] and Ni—O [2.089 (3) Å] bond lengths are both in the normal ranges, meanwhile N—Ni—N bond angle is smaller than that of O—Ni—O due to the small size of TACN ring. Counter–ions NO3- and Br- interconnect neighbouring cations by O—H···O hydrogen bond and O—H···Br- weak interaction (Table 1) into three–dimensional supramolecular network (Fig. 2).
Experimental
1,4,7–Triazacyclononane trihydrobromide (TACN.3HBr) was prepared by following a modified published method (Koyama & Yoshino, 1972).
To a solution of 0.074 g (0.02 mmol) of TACN.3HBr in water (10 ml), 0.1 M NaOH was added to adjust the pH to 6. Then aqueous solution (5 ml) of 0.058 g (0.02 mmol) of Ni(NO3)2.6H20 was added and the resulting mixture was stirred under reflux for 6 h. After cooling, the mixture was filtered, and the filtrate was allowed to standing at ambient temperature. Plate–like green single crystals suitable for X–ray crystallographic analysis were collected by slow evaporation of the filtrate within two months.
Refinement
All methylene H atoms were placed at calculated positions and refined as riding on their parent atoms [C—H = 0.97 Å and Uiso(H) = 1.2 Ueq(C)]. The H atoms of amine groups and water molecules were located in a difference Fourier map as riding atoms, with Uiso(H) = 1.5 Ueq(N) and 1.5 Ueq(O).
Figures
Fig. 1.
An ORTEP plot for the title compound (I) with the atom labelling scheme and 30% displacement ellipsoids. Symmetry codes: (i) y+1/2, -z+3/2, -x+2; (ii) -z+2, x-1/2, -y+3/2.
Fig. 2.
A view of the packing diagram of the title compound (I), showing the hydrogen–bonding supramolecular network. Hydrogen bonds are drawn in dashed lines. H atoms not involved in hydrogen bonds are omitted for clarity.
Crystal data
| [Ni(C6H15N3)(H2O)3]Br(NO3) | Dx = 1.767 Mg m−3 |
| Mr = 383.89 | Mo Kα radiation, λ = 0.71073 Å |
| Cubic, P213 | Cell parameters from 13409 reflections |
| Hall symbol: P 2ac 2ab 3 | θ = 3.1–27.4° |
| a = 11.300 (1) Å | µ = 4.14 mm−1 |
| V = 1442.9 (3) Å3 | T = 298 K |
| Z = 4 | Plate, green |
| F(000) = 784 | 0.29 × 0.27 × 0.18 mm |
Data collection
| Bruker APEXII CCD area-detector diffractometer | 1110 independent reflections |
| Radiation source: fine-focus sealed tube | 985 reflections with I > 2σ(I) |
| graphite | Rint = 0.080 |
| φ and ω scans | θmax = 27.4°, θmin = 3.1° |
| Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −14→14 |
| Tmin = 0.320, Tmax = 0.480 | k = −14→14 |
| 15223 measured reflections | l = −14→14 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.035 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.072 | w = 1/[σ2(Fo2) + (0.0232P)2 + 1.6516P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.03 | (Δ/σ)max < 0.001 |
| 8717 reflections | Δρmax = 0.36 e Å−3 |
| 61 parameters | Δρmin = −0.46 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 475 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.01 (3) |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Ni1 | 1.06169 (4) | 0.56169 (4) | 0.93831 (4) | 0.02729 (19) | |
| Br1 | 0.25347 (4) | 0.24653 (4) | 0.75347 (4) | 0.0437 (2) | |
| C1 | 0.8566 (4) | 0.4233 (4) | 0.8872 (4) | 0.0437 (11) | |
| H1A | 0.8123 | 0.3498 | 0.8858 | 0.052* | |
| H1B | 0.8438 | 0.4636 | 0.8125 | 0.052* | |
| C2 | 1.0118 (4) | 0.3128 (4) | 0.9995 (4) | 0.0449 (11) | |
| H2A | 1.0326 | 0.2365 | 0.9660 | 0.054* | |
| H2B | 0.9417 | 0.3022 | 1.0478 | 0.054* | |
| N1 | 0.9850 (3) | 0.3973 (3) | 0.9019 (3) | 0.0353 (8) | |
| H3 | 1.0226 | 0.3631 | 0.8407 | 0.053* | |
| N2 | 0.9466 (3) | 0.9466 (3) | 0.9466 (3) | 0.0316 (11) | |
| O1 | 1.0196 (3) | 0.6447 (3) | 0.7786 (3) | 0.0391 (8) | |
| O2 | 0.8854 (3) | 1.0345 (3) | 0.9196 (3) | 0.0577 (9) | |
| H4B | 0.947 (5) | 0.659 (4) | 0.765 (4) | 0.050 (14)* | |
| H4A | 1.040 (4) | 0.598 (4) | 0.723 (4) | 0.050 (14)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Ni1 | 0.02729 (19) | 0.02729 (19) | 0.02729 (19) | −0.0011 (2) | 0.0011 (2) | 0.0011 (2) |
| Br1 | 0.0437 (2) | 0.0437 (2) | 0.0437 (2) | −0.0012 (2) | 0.0012 (2) | −0.0012 (2) |
| C1 | 0.041 (2) | 0.042 (3) | 0.049 (3) | −0.016 (2) | −0.009 (2) | 0.005 (2) |
| C2 | 0.054 (3) | 0.027 (2) | 0.054 (3) | −0.0022 (19) | 0.010 (2) | 0.0063 (19) |
| N1 | 0.0365 (19) | 0.0349 (19) | 0.0346 (19) | −0.0022 (14) | 0.0050 (14) | −0.0021 (14) |
| N2 | 0.0316 (11) | 0.0316 (11) | 0.0316 (11) | 0.0002 (15) | 0.0002 (15) | 0.0002 (15) |
| O1 | 0.0424 (18) | 0.0419 (18) | 0.0330 (18) | 0.0052 (14) | −0.0007 (13) | 0.0024 (12) |
| O2 | 0.055 (2) | 0.054 (2) | 0.065 (2) | 0.0156 (16) | 0.0149 (17) | 0.0133 (18) |
Geometric parameters (Å, °)
| Ni1—O1i | 2.089 (3) | C2—N1 | 1.490 (5) |
| Ni1—O1 | 2.089 (3) | C2—C1ii | 1.520 (6) |
| Ni1—O1ii | 2.089 (3) | C2—H2A | 0.9700 |
| Ni1—N1 | 2.091 (3) | C2—H2B | 0.9700 |
| Ni1—N1ii | 2.091 (3) | N1—H3 | 0.8987 |
| Ni1—N1i | 2.091 (3) | N2—O2iii | 1.248 (3) |
| C1—N1 | 1.490 (6) | N2—O2iv | 1.248 (3) |
| C1—C2i | 1.520 (6) | N2—O2 | 1.248 (3) |
| C1—H1A | 0.9700 | O1—H4B | 0.85 (5) |
| C1—H1B | 0.9700 | O1—H4A | 0.84 (4) |
| O1i—Ni1—O1 | 84.90 (14) | H1A—C1—H1B | 108.1 |
| O1i—Ni1—O1ii | 84.90 (14) | N1—C2—C1ii | 111.7 (3) |
| O1—Ni1—O1ii | 84.90 (14) | N1—C2—H2A | 109.3 |
| O1i—Ni1—N1 | 177.00 (13) | C1ii—C2—H2A | 109.3 |
| O1—Ni1—N1 | 97.72 (13) | N1—C2—H2B | 109.3 |
| O1ii—Ni1—N1 | 93.87 (12) | C1ii—C2—H2B | 109.3 |
| O1i—Ni1—N1ii | 93.87 (12) | H2A—C2—H2B | 108.0 |
| O1—Ni1—N1ii | 177.00 (13) | C1—N1—C2 | 114.0 (3) |
| O1ii—Ni1—N1ii | 97.72 (12) | C1—N1—Ni1 | 104.5 (3) |
| N1—Ni1—N1ii | 83.58 (14) | C2—N1—Ni1 | 109.8 (3) |
| O1i—Ni1—N1i | 97.72 (12) | C1—N1—H3 | 117.3 |
| O1—Ni1—N1i | 93.87 (12) | C2—N1—H3 | 101.4 |
| O1ii—Ni1—N1i | 177.00 (13) | Ni1—N1—H3 | 109.7 |
| N1—Ni1—N1i | 83.58 (14) | O2iii—N2—O2iv | 119.999 (2) |
| N1ii—Ni1—N1i | 83.58 (14) | O2iii—N2—O2 | 120.000 (3) |
| N1—C1—C2i | 110.3 (4) | O2iv—N2—O2 | 120.000 (2) |
| N1—C1—H1A | 109.6 | Ni1—O1—H4B | 117 (4) |
| C2i—C1—H1A | 109.6 | Ni1—O1—H4A | 107 (4) |
| N1—C1—H1B | 109.6 | H4B—O1—H4A | 104 (5) |
| C2i—C1—H1B | 109.6 | ||
| C2i—C1—N1—C2 | 72.1 (5) | N1ii—Ni1—N1—C1 | 114.6 (2) |
| C2i—C1—N1—Ni1 | −47.8 (4) | N1i—Ni1—N1—C1 | 30.4 (3) |
| C1ii—C2—N1—C1 | −133.2 (4) | O1—Ni1—N1—C2 | 174.6 (3) |
| C1ii—C2—N1—Ni1 | −16.3 (4) | O1ii—Ni1—N1—C2 | 89.3 (3) |
| O1—Ni1—N1—C1 | −62.7 (3) | N1ii—Ni1—N1—C2 | −8.1 (3) |
| O1ii—Ni1—N1—C1 | −148.0 (3) | N1i—Ni1—N1—C2 | −92.3 (2) |
Symmetry codes: (i) y+1/2, −z+3/2, −x+2; (ii) −z+2, x−1/2, −y+3/2; (iii) z, x, y; (iv) y, z, x.
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H4A···O2v | 0.84 (4) | 1.95 (5) | 2.776 (5) | 162 (4) |
| O1—H4B···Br1vi | 0.85 (5) | 2.48 (5) | 3.312 (3) | 167 (4) |
Symmetry codes: (v) −x+2, y−1/2, −z+3/2; (vi) −x+1, y+1/2, −z+3/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PB2027).
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681001620X/pb2027sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053681001620X/pb2027Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


