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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 May 8;66(Pt 6):m624–m625. doi: 10.1107/S160053681001620X

Triaqua­(1,4,7-triaza­cyclo­nonane-κ3 N 1,N 4,N 7)nickel(II) bromide nitrate

Changchun Wen a, Jianqi Lu a, Zhong Zhang a,*
PMCID: PMC2979567  PMID: 21579281

Abstract

In the title half-sandwich compound, [Ni(C6H15N3)(H2O)3]Br(NO3), the central NiII ion, lying on a threefold rotation axis, is six-coordinated by three amine N atoms from the face-capping triaza macrocycle and three water O atoms in a slightly distorted octa­hedral geometry. In the crystal, O—H⋯O hydrogen bonding and weak O—H⋯Br inter­actions associate the NiII cations and the counter-ions into a three-dimensional supra­molecular network.

Related literature

For the preparation of 1,4,7-triaza­cyclo­nonane trihydro­bromide, see: Koyama & Yoshino (1972). For the applications of metal complexes containing 1,4,7-triaza­cyclo­nonane as small-mol­ecule models of metalloenzymes and metalloproteins and as mol­ecule-based magnets, see: Berseth et al. (2000); Chaudhury et al. (1985); Cheng et al. (2004); Deal et al. (1996); Hegg & Burstyn (1995); Hegg et al. (1997); Lin et al. (2001); Poganiuch et al. (1991); Williams et al. (1999). For related NiII complexes with 1,4,7-triaza­cyclo­nonane, see: Bencini et al. (1990); Stranger et al. (1992); Wang et al. (2003, 2005); Zompa & Margulis (1978).graphic file with name e-66-0m624-scheme1.jpg

Experimental

Crystal data

  • [Ni(C6H15N3)(H2O)3]Br(NO3)

  • M r = 383.89

  • Cubic, Inline graphic

  • a = 11.300 (1) Å

  • V = 1442.9 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 4.14 mm−1

  • T = 298 K

  • 0.29 × 0.27 × 0.18 mm

Data collection

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 1998) T min = 0.320, T max = 0.480

  • 15223 measured reflections

  • 1110 independent reflections

  • 985 reflections with I > 2σ(I)

  • R int = 0.080

Refinement

  • R[F 2 > 2σ(F 2)] = 0.035

  • wR(F 2) = 0.072

  • S = 1.03

  • 1110 reflections

  • 61 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.36 e Å−3

  • Δρmin = −0.47 e Å−3

  • Absolute structure: Flack (1983), 475 Friedel pairs

  • Flack parameter: 0.01 (3)

Data collection: APEX2 (Bruker, 2002); cell refinement: SAINT (Bruker, 2002); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681001620X/pb2027sup1.cif

e-66-0m624-sup1.cif (14.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053681001620X/pb2027Isup2.hkl

e-66-0m624-Isup2.hkl (55.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H4A⋯O2i 0.84 (4) 1.95 (5) 2.776 (5) 162 (4)
O1—H4B⋯Br1ii 0.85 (5) 2.48 (5) 3.312 (3) 167 (4)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors are grateful for financial support from the Guangxi Science Foundation (grant No. 0832023) and the Scientific Research Foundation of Guangxi Normal University.

supplementary crystallographic information

Comment

The coordination chemistry of 1,4,7–triazacyclononane (TACN) has been extensively studied for its applications in the simulation of metalloenzymes and metalloproteins (Chaudhury et al., 1985; Deal et al., 1996; Hegg & Burstyn, 1995; Hegg et al., 1997; Lin et al., 2001; Williams et al., 1999) as well as in constructing molecule–based magnetic materials (Berseth et al., 2000; Cheng et al., 2004; Poganiuch et al., 1991). In general, TACN ligand can form stable sandwich complexes with many transition metals (Stranger et al., 1992; Zompa & Margulis, 1978) or functions as a terminal chelator for the assembly of binuclear/polynuclear species and coordination polymers supported by bridging ligands (Bencini et al., 1990; Wang et al., 2005; Wang et al., 2003). In this paper, a half–sandwich type NiII complex with TACN has been synthesized and characterized.

In the selected crystal, the title compound (I) crystallizes in a chiral space group P213 and Flack parameter of 0.01 (3) indicates that a spontaneous resolution has been achieved during crystallization. As depicted in Fig. 1, the NiII center in the complex cation lies on a three–fold rotation axis and three amine N atoms from facially coordinated TACN and three water molecules complete the slightly distorted octahedral arrangement. Upon coordination, three five–membered Ni—N—C—C—N chelating rings subtended at metal center adopt (λλλ) conformation, which is the source of the chirality of the crystal. Ni—N [2.091 (3) Å] and Ni—O [2.089 (3) Å] bond lengths are both in the normal ranges, meanwhile N—Ni—N bond angle is smaller than that of O—Ni—O due to the small size of TACN ring. Counter–ions NO3- and Br- interconnect neighbouring cations by O—H···O hydrogen bond and O—H···Br- weak interaction (Table 1) into three–dimensional supramolecular network (Fig. 2).

Experimental

1,4,7–Triazacyclononane trihydrobromide (TACN.3HBr) was prepared by following a modified published method (Koyama & Yoshino, 1972).

To a solution of 0.074 g (0.02 mmol) of TACN.3HBr in water (10 ml), 0.1 M NaOH was added to adjust the pH to 6. Then aqueous solution (5 ml) of 0.058 g (0.02 mmol) of Ni(NO3)2.6H20 was added and the resulting mixture was stirred under reflux for 6 h. After cooling, the mixture was filtered, and the filtrate was allowed to standing at ambient temperature. Plate–like green single crystals suitable for X–ray crystallographic analysis were collected by slow evaporation of the filtrate within two months.

Refinement

All methylene H atoms were placed at calculated positions and refined as riding on their parent atoms [C—H = 0.97 Å and Uiso(H) = 1.2 Ueq(C)]. The H atoms of amine groups and water molecules were located in a difference Fourier map as riding atoms, with Uiso(H) = 1.5 Ueq(N) and 1.5 Ueq(O).

Figures

Fig. 1.

Fig. 1.

An ORTEP plot for the title compound (I) with the atom labelling scheme and 30% displacement ellipsoids. Symmetry codes: (i) y+1/2, -z+3/2, -x+2; (ii) -z+2, x-1/2, -y+3/2.

Fig. 2.

Fig. 2.

A view of the packing diagram of the title compound (I), showing the hydrogen–bonding supramolecular network. Hydrogen bonds are drawn in dashed lines. H atoms not involved in hydrogen bonds are omitted for clarity.

Crystal data

[Ni(C6H15N3)(H2O)3]Br(NO3) Dx = 1.767 Mg m3
Mr = 383.89 Mo Kα radiation, λ = 0.71073 Å
Cubic, P213 Cell parameters from 13409 reflections
Hall symbol: P 2ac 2ab 3 θ = 3.1–27.4°
a = 11.300 (1) Å µ = 4.14 mm1
V = 1442.9 (3) Å3 T = 298 K
Z = 4 Plate, green
F(000) = 784 0.29 × 0.27 × 0.18 mm

Data collection

Bruker APEXII CCD area-detector diffractometer 1110 independent reflections
Radiation source: fine-focus sealed tube 985 reflections with I > 2σ(I)
graphite Rint = 0.080
φ and ω scans θmax = 27.4°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 1998) h = −14→14
Tmin = 0.320, Tmax = 0.480 k = −14→14
15223 measured reflections l = −14→14

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.072 w = 1/[σ2(Fo2) + (0.0232P)2 + 1.6516P] where P = (Fo2 + 2Fc2)/3
S = 1.03 (Δ/σ)max < 0.001
8717 reflections Δρmax = 0.36 e Å3
61 parameters Δρmin = −0.46 e Å3
0 restraints Absolute structure: Flack (1983), 475 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: 0.01 (3)

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Ni1 1.06169 (4) 0.56169 (4) 0.93831 (4) 0.02729 (19)
Br1 0.25347 (4) 0.24653 (4) 0.75347 (4) 0.0437 (2)
C1 0.8566 (4) 0.4233 (4) 0.8872 (4) 0.0437 (11)
H1A 0.8123 0.3498 0.8858 0.052*
H1B 0.8438 0.4636 0.8125 0.052*
C2 1.0118 (4) 0.3128 (4) 0.9995 (4) 0.0449 (11)
H2A 1.0326 0.2365 0.9660 0.054*
H2B 0.9417 0.3022 1.0478 0.054*
N1 0.9850 (3) 0.3973 (3) 0.9019 (3) 0.0353 (8)
H3 1.0226 0.3631 0.8407 0.053*
N2 0.9466 (3) 0.9466 (3) 0.9466 (3) 0.0316 (11)
O1 1.0196 (3) 0.6447 (3) 0.7786 (3) 0.0391 (8)
O2 0.8854 (3) 1.0345 (3) 0.9196 (3) 0.0577 (9)
H4B 0.947 (5) 0.659 (4) 0.765 (4) 0.050 (14)*
H4A 1.040 (4) 0.598 (4) 0.723 (4) 0.050 (14)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Ni1 0.02729 (19) 0.02729 (19) 0.02729 (19) −0.0011 (2) 0.0011 (2) 0.0011 (2)
Br1 0.0437 (2) 0.0437 (2) 0.0437 (2) −0.0012 (2) 0.0012 (2) −0.0012 (2)
C1 0.041 (2) 0.042 (3) 0.049 (3) −0.016 (2) −0.009 (2) 0.005 (2)
C2 0.054 (3) 0.027 (2) 0.054 (3) −0.0022 (19) 0.010 (2) 0.0063 (19)
N1 0.0365 (19) 0.0349 (19) 0.0346 (19) −0.0022 (14) 0.0050 (14) −0.0021 (14)
N2 0.0316 (11) 0.0316 (11) 0.0316 (11) 0.0002 (15) 0.0002 (15) 0.0002 (15)
O1 0.0424 (18) 0.0419 (18) 0.0330 (18) 0.0052 (14) −0.0007 (13) 0.0024 (12)
O2 0.055 (2) 0.054 (2) 0.065 (2) 0.0156 (16) 0.0149 (17) 0.0133 (18)

Geometric parameters (Å, °)

Ni1—O1i 2.089 (3) C2—N1 1.490 (5)
Ni1—O1 2.089 (3) C2—C1ii 1.520 (6)
Ni1—O1ii 2.089 (3) C2—H2A 0.9700
Ni1—N1 2.091 (3) C2—H2B 0.9700
Ni1—N1ii 2.091 (3) N1—H3 0.8987
Ni1—N1i 2.091 (3) N2—O2iii 1.248 (3)
C1—N1 1.490 (6) N2—O2iv 1.248 (3)
C1—C2i 1.520 (6) N2—O2 1.248 (3)
C1—H1A 0.9700 O1—H4B 0.85 (5)
C1—H1B 0.9700 O1—H4A 0.84 (4)
O1i—Ni1—O1 84.90 (14) H1A—C1—H1B 108.1
O1i—Ni1—O1ii 84.90 (14) N1—C2—C1ii 111.7 (3)
O1—Ni1—O1ii 84.90 (14) N1—C2—H2A 109.3
O1i—Ni1—N1 177.00 (13) C1ii—C2—H2A 109.3
O1—Ni1—N1 97.72 (13) N1—C2—H2B 109.3
O1ii—Ni1—N1 93.87 (12) C1ii—C2—H2B 109.3
O1i—Ni1—N1ii 93.87 (12) H2A—C2—H2B 108.0
O1—Ni1—N1ii 177.00 (13) C1—N1—C2 114.0 (3)
O1ii—Ni1—N1ii 97.72 (12) C1—N1—Ni1 104.5 (3)
N1—Ni1—N1ii 83.58 (14) C2—N1—Ni1 109.8 (3)
O1i—Ni1—N1i 97.72 (12) C1—N1—H3 117.3
O1—Ni1—N1i 93.87 (12) C2—N1—H3 101.4
O1ii—Ni1—N1i 177.00 (13) Ni1—N1—H3 109.7
N1—Ni1—N1i 83.58 (14) O2iii—N2—O2iv 119.999 (2)
N1ii—Ni1—N1i 83.58 (14) O2iii—N2—O2 120.000 (3)
N1—C1—C2i 110.3 (4) O2iv—N2—O2 120.000 (2)
N1—C1—H1A 109.6 Ni1—O1—H4B 117 (4)
C2i—C1—H1A 109.6 Ni1—O1—H4A 107 (4)
N1—C1—H1B 109.6 H4B—O1—H4A 104 (5)
C2i—C1—H1B 109.6
C2i—C1—N1—C2 72.1 (5) N1ii—Ni1—N1—C1 114.6 (2)
C2i—C1—N1—Ni1 −47.8 (4) N1i—Ni1—N1—C1 30.4 (3)
C1ii—C2—N1—C1 −133.2 (4) O1—Ni1—N1—C2 174.6 (3)
C1ii—C2—N1—Ni1 −16.3 (4) O1ii—Ni1—N1—C2 89.3 (3)
O1—Ni1—N1—C1 −62.7 (3) N1ii—Ni1—N1—C2 −8.1 (3)
O1ii—Ni1—N1—C1 −148.0 (3) N1i—Ni1—N1—C2 −92.3 (2)

Symmetry codes: (i) y+1/2, −z+3/2, −x+2; (ii) −z+2, x−1/2, −y+3/2; (iii) z, x, y; (iv) y, z, x.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H4A···O2v 0.84 (4) 1.95 (5) 2.776 (5) 162 (4)
O1—H4B···Br1vi 0.85 (5) 2.48 (5) 3.312 (3) 167 (4)

Symmetry codes: (v) −x+2, y−1/2, −z+3/2; (vi) −x+1, y+1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PB2027).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681001620X/pb2027sup1.cif

e-66-0m624-sup1.cif (14.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S160053681001620X/pb2027Isup2.hkl

e-66-0m624-Isup2.hkl (55.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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