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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Jan 9;66(Pt 2):o309. doi: 10.1107/S1600536810000346

1-[(Z)-(5-Methyl-2-pyrid­yl)iminiometh­yl]-2-naphtholate

Xin-Yu Liu a, Yu-Hua Fan a,*, Qiang Wang a, Cai-Feng Bi a, Yu-Fang Wang a
PMCID: PMC2979867  PMID: 21579740

Abstract

In the zwitterionic title compound, C17H14N2O, the dihedral angle between the naphthalene and pyridine ring systems is 3.56 (9)° and an intra­molecular N—H⋯O hydrogen bond generates an S(6) ring. In the crystal, mol­ecules are linked by C—H⋯O inter­actions.

Related literature

For a related structure, see: Eltayeb et al. (2007).graphic file with name e-66-0o309-scheme1.jpg

Experimental

Crystal data

  • C17H14N2O

  • M r = 262.30

  • Monoclinic, Inline graphic

  • a = 4.8703 (2) Å

  • b = 9.5525 (5) Å

  • c = 14.0804 (6) Å

  • β = 98.353 (2)°

  • V = 648.12 (5) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 296 K

  • 0.47 × 0.10 × 0.09 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2005) T min = 0.961, T max = 0.992

  • 6930 measured reflections

  • 1660 independent reflections

  • 1321 reflections with I > 2σ(I)

  • R int = 0.029

Refinement

  • R[F 2 > 2σ(F 2)] = 0.038

  • wR(F 2) = 0.109

  • S = 0.98

  • 1660 reflections

  • 182 parameters

  • 1 restraint

  • H-atom parameters constrained

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.15 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810000346/hb5298sup1.cif

e-66-0o309-sup1.cif (18.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810000346/hb5298Isup2.hkl

e-66-0o309-Isup2.hkl (80.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2⋯O1 0.86 1.89 2.571 (3) 135
C3—H3⋯O1i 0.93 2.46 3.346 (3) 159

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors acknowledge the National Science Foundation of China for its financial support for this project (grant No. 20971115).

supplementary crystallographic information

Comment

One similar compound as 1-{2-[(2-hydroxy-1-naphthyl)methyleneamino] phenyliminiomethyl}-2-naphtholate methanol hemisolvate has been synthesized and characterized by X-ray diffraction (Eltayeb et al., 2007). We now report on the title compound, (I), whose structure was determined by X-ray diffraction (Fig. 1).

This compound, which has a non-planar molecular structure, contains two aromatic rings linked through a imine group. The dihedral angle between the two aromatic rings C2—C3—C4—C5—N1—C6 and C8—C9—C14—C15—C16—C17 is 3.46(0.16)°. Intramolecular N—H···O hydrogen bonds are observed in the molecular structure, similar to those reported structure (Eltayeb et al., 2007). The molecules is formed a one-dimensional zigzag chain through intermolecular C—H···O hydrogen bonds, which make the molecule more stabile.

As seen in Fig. 2, the molecules are linked into a one-dimensional chain by intermolecular C—H···O hydrogen bonds (Table 2).

Experimental

2-Hydroxy-1-naphthaldehyde (1 mmol, 172.2 mg) were added with stirring to anhydrous ethanol (30 ml) to make a solution. It was slowly dropped into the anhydrous ethanol solution (15 ml) containing (1 mmol, 108.1 mg) 5-methylpyridin-2-amine at 339 K and mixture was stirred at 339 K for 4 h, a mass of deep yellow grain was separated out. The product was collected by filtration and washed several times with anhydrous ethanol and dried under vacuum. Yellow needles of (I) were obtained by slow evaporation at room temperature from anhydrous ethanol solution after 4 days.

Refinement

Anomalous dispersion was negligible and Friedel pairs were merged before refinement. All H-atoms were positioned geometrically (C—H = 0.93–0.96Å, N—H = 0.86Å) and refined as riding with Uiso(H) =1.2Ueq(carrier).

Figures

Fig. 1.

Fig. 1.

The structure of (I) showing 30% probability displacement ellipsoids.

Fig. 2.

Fig. 2.

The crystal packing of (I), viewed approximately along the a axis.

Crystal data

C17H14N2O F(000) = 276
Mr = 262.30 Dx = 1.344 Mg m3
Monoclinic, P21 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2yb Cell parameters from 1877 reflections
a = 4.8703 (2) Å θ = 2.6–25.6°
b = 9.5525 (5) Å µ = 0.09 mm1
c = 14.0804 (6) Å T = 296 K
β = 98.353 (2)° Needle, yellow
V = 648.12 (5) Å3 0.47 × 0.10 × 0.09 mm
Z = 2

Data collection

Bruker APEXII CCD diffractometer 1660 independent reflections
Radiation source: fine-focus sealed tube 1321 reflections with I > 2σ(I)
graphite Rint = 0.029
φ and ω scans θmax = 28.1°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005) h = −6→6
Tmin = 0.961, Tmax = 0.992 k = −12→11
6930 measured reflections l = −18→15

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109 H-atom parameters constrained
S = 0.98 w = 1/[σ2(Fo2) + (0.062P)2 + 0.0757P] where P = (Fo2 + 2Fc2)/3
1660 reflections (Δ/σ)max < 0.001
182 parameters Δρmax = 0.18 e Å3
1 restraint Δρmin = −0.15 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 −0.5458 (5) −0.0508 (3) 0.8827 (2) 0.0561 (6)
H1A −0.6558 −0.0735 0.8224 0.084*
H1B −0.6646 −0.0178 0.9266 0.084*
H1C −0.4484 −0.1328 0.9086 0.084*
C2 −0.3401 (5) 0.0616 (2) 0.86752 (16) 0.0431 (5)
C3 −0.2411 (5) 0.1558 (3) 0.93834 (17) 0.0518 (6)
H3 −0.3011 0.1508 0.9980 0.062*
C4 −0.0533 (5) 0.2576 (3) 0.92116 (16) 0.0492 (6)
H4 0.0127 0.3223 0.9683 0.059*
C5 0.0341 (4) 0.2610 (2) 0.83229 (15) 0.0382 (5)
C6 −0.2414 (5) 0.0762 (3) 0.78108 (16) 0.0478 (6)
H6 −0.3082 0.0143 0.7322 0.057*
C7 0.3255 (4) 0.3752 (2) 0.73144 (15) 0.0398 (5)
H7 0.2584 0.3151 0.6815 0.048*
C8 0.5254 (4) 0.4749 (2) 0.71574 (15) 0.0383 (5)
C9 0.6227 (4) 0.4846 (2) 0.62325 (15) 0.0371 (5)
C10 0.5226 (5) 0.3996 (3) 0.54463 (16) 0.0468 (6)
H10 0.3905 0.3315 0.5518 0.056*
C11 0.6141 (5) 0.4140 (3) 0.45734 (16) 0.0501 (6)
H11 0.5423 0.3566 0.4064 0.060*
C12 0.8133 (5) 0.5138 (3) 0.44477 (17) 0.0525 (6)
H12 0.8743 0.5238 0.3855 0.063*
C13 0.9182 (5) 0.5968 (3) 0.51987 (18) 0.0510 (6)
H13 1.0539 0.6623 0.5116 0.061*
C14 0.8257 (4) 0.5857 (2) 0.60997 (16) 0.0413 (5)
C15 0.9323 (5) 0.6740 (3) 0.68904 (18) 0.0499 (6)
H15 1.0677 0.7395 0.6804 0.060*
C16 0.8457 (5) 0.6663 (3) 0.77458 (18) 0.0484 (6)
H16 0.9224 0.7259 0.8236 0.058*
C17 0.6352 (5) 0.5673 (2) 0.79247 (16) 0.0430 (5)
N1 −0.0571 (4) 0.1724 (2) 0.76194 (13) 0.0462 (5)
N2 0.2284 (4) 0.3625 (2) 0.81358 (13) 0.0424 (4)
H2 0.2877 0.4203 0.8588 0.051*
O1 0.5562 (4) 0.5643 (2) 0.87507 (11) 0.0567 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0517 (14) 0.0467 (15) 0.0725 (16) −0.0048 (12) 0.0176 (12) 0.0080 (13)
C2 0.0391 (10) 0.0397 (12) 0.0520 (12) 0.0037 (10) 0.0115 (9) 0.0067 (11)
C3 0.0604 (14) 0.0536 (15) 0.0459 (12) −0.0031 (13) 0.0230 (11) 0.0044 (12)
C4 0.0581 (14) 0.0484 (14) 0.0438 (12) −0.0078 (12) 0.0163 (10) −0.0060 (11)
C5 0.0403 (10) 0.0341 (11) 0.0416 (11) 0.0036 (9) 0.0108 (8) 0.0026 (9)
C6 0.0525 (13) 0.0435 (13) 0.0478 (12) −0.0049 (11) 0.0081 (10) −0.0027 (11)
C7 0.0436 (11) 0.0356 (11) 0.0418 (11) 0.0025 (9) 0.0116 (8) 0.0036 (9)
C8 0.0411 (10) 0.0322 (11) 0.0429 (11) 0.0033 (9) 0.0106 (8) 0.0024 (9)
C9 0.0370 (10) 0.0337 (11) 0.0421 (10) 0.0038 (9) 0.0103 (8) 0.0058 (9)
C10 0.0496 (13) 0.0447 (14) 0.0481 (12) −0.0016 (11) 0.0136 (10) 0.0000 (11)
C11 0.0555 (14) 0.0529 (15) 0.0437 (12) 0.0054 (12) 0.0135 (10) −0.0005 (11)
C12 0.0590 (14) 0.0553 (15) 0.0475 (13) 0.0092 (12) 0.0225 (10) 0.0091 (11)
C13 0.0504 (13) 0.0447 (14) 0.0615 (15) 0.0012 (11) 0.0203 (11) 0.0108 (12)
C14 0.0404 (11) 0.0356 (12) 0.0493 (12) 0.0033 (10) 0.0113 (9) 0.0055 (10)
C15 0.0486 (12) 0.0385 (13) 0.0645 (14) −0.0057 (11) 0.0145 (10) 0.0025 (12)
C16 0.0508 (13) 0.0365 (12) 0.0582 (14) −0.0035 (11) 0.0086 (10) −0.0055 (11)
C17 0.0492 (12) 0.0356 (12) 0.0460 (12) 0.0033 (10) 0.0125 (9) 0.0016 (10)
N1 0.0536 (11) 0.0441 (11) 0.0430 (10) −0.0029 (10) 0.0146 (8) −0.0014 (9)
N2 0.0497 (11) 0.0370 (10) 0.0425 (9) −0.0017 (9) 0.0134 (8) −0.0010 (8)
O1 0.0721 (11) 0.0548 (11) 0.0463 (9) −0.0073 (10) 0.0187 (8) −0.0083 (8)

Geometric parameters (Å, °)

C1—C2 1.504 (3) C8—C9 1.452 (3)
C1—H1A 0.9600 C9—C10 1.402 (3)
C1—H1B 0.9600 C9—C14 1.413 (3)
C1—H1C 0.9600 C10—C11 1.374 (3)
C2—C3 1.377 (4) C10—H10 0.9300
C2—C6 1.379 (3) C11—C12 1.390 (4)
C3—C4 1.380 (4) C11—H11 0.9300
C3—H3 0.9300 C12—C13 1.360 (4)
C4—C5 1.379 (3) C12—H12 0.9300
C4—H4 0.9300 C13—C14 1.410 (3)
C5—N1 1.329 (3) C13—H13 0.9300
C5—N2 1.407 (3) C14—C15 1.433 (3)
C6—N1 1.339 (3) C15—C16 1.335 (3)
C6—H6 0.9300 C15—H15 0.9300
C7—N2 1.317 (3) C16—C17 1.444 (3)
C7—C8 1.402 (3) C16—H16 0.9300
C7—H7 0.9300 C17—O1 1.277 (3)
C8—C17 1.436 (3) N2—H2 0.8600
C2—C1—H1A 109.5 C14—C9—C8 119.20 (19)
C2—C1—H1B 109.5 C11—C10—C9 121.8 (2)
H1A—C1—H1B 109.5 C11—C10—H10 119.1
C2—C1—H1C 109.5 C9—C10—H10 119.1
H1A—C1—H1C 109.5 C10—C11—C12 120.4 (2)
H1B—C1—H1C 109.5 C10—C11—H11 119.8
C3—C2—C6 116.3 (2) C12—C11—H11 119.8
C3—C2—C1 122.3 (2) C13—C12—C11 119.4 (2)
C6—C2—C1 121.5 (2) C13—C12—H12 120.3
C2—C3—C4 120.3 (2) C11—C12—H12 120.3
C2—C3—H3 119.8 C12—C13—C14 121.5 (2)
C4—C3—H3 119.8 C12—C13—H13 119.3
C5—C4—C3 118.4 (2) C14—C13—H13 119.3
C5—C4—H4 120.8 C13—C14—C9 119.4 (2)
C3—C4—H4 120.8 C13—C14—C15 121.8 (2)
N1—C5—C4 123.2 (2) C9—C14—C15 118.72 (19)
N1—C5—N2 117.42 (18) C16—C15—C14 122.9 (2)
C4—C5—N2 119.4 (2) C16—C15—H15 118.6
N1—C6—C2 125.2 (2) C14—C15—H15 118.6
N1—C6—H6 117.4 C15—C16—C17 121.3 (2)
C2—C6—H6 117.4 C15—C16—H16 119.4
N2—C7—C8 123.2 (2) C17—C16—H16 119.4
N2—C7—H7 118.4 O1—C17—C8 122.9 (2)
C8—C7—H7 118.4 O1—C17—C16 119.3 (2)
C7—C8—C17 119.32 (18) C8—C17—C16 117.86 (19)
C7—C8—C9 120.61 (19) C5—N1—C6 116.61 (19)
C17—C8—C9 120.07 (19) C7—N2—C5 124.41 (19)
C10—C9—C14 117.45 (19) C7—N2—H2 117.8
C10—C9—C8 123.34 (19) C5—N2—H2 117.8
C6—C2—C3—C4 −0.1 (4) C10—C9—C14—C13 0.0 (3)
C1—C2—C3—C4 −179.7 (2) C8—C9—C14—C13 −179.1 (2)
C2—C3—C4—C5 −0.8 (4) C10—C9—C14—C15 −179.9 (2)
C3—C4—C5—N1 1.1 (4) C8—C9—C14—C15 1.0 (3)
C3—C4—C5—N2 −179.1 (2) C13—C14—C15—C16 179.2 (2)
C3—C2—C6—N1 0.9 (4) C9—C14—C15—C16 −0.9 (4)
C1—C2—C6—N1 −179.5 (2) C14—C15—C16—C17 −0.3 (4)
N2—C7—C8—C17 1.0 (3) C7—C8—C17—O1 −1.0 (3)
N2—C7—C8—C9 −179.45 (19) C9—C8—C17—O1 179.5 (2)
C7—C8—C9—C10 1.4 (3) C7—C8—C17—C16 178.5 (2)
C17—C8—C9—C10 −179.1 (2) C9—C8—C17—C16 −1.1 (3)
C7—C8—C9—C14 −179.55 (19) C15—C16—C17—O1 −179.3 (2)
C17—C8—C9—C14 0.0 (3) C15—C16—C17—C8 1.2 (3)
C14—C9—C10—C11 −0.8 (3) C4—C5—N1—C6 −0.3 (3)
C8—C9—C10—C11 178.3 (2) N2—C5—N1—C6 179.8 (2)
C9—C10—C11—C12 0.6 (4) C2—C6—N1—C5 −0.7 (3)
C10—C11—C12—C13 0.4 (4) C8—C7—N2—C5 −178.1 (2)
C11—C12—C13—C14 −1.2 (4) N1—C5—N2—C7 −0.1 (3)
C12—C13—C14—C9 1.0 (3) C4—C5—N2—C7 −180.0 (2)
C12—C13—C14—C15 −179.1 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2···O1 0.86 1.89 2.571 (3) 135
C3—H3···O1i 0.93 2.46 3.346 (3) 159

Symmetry codes: (i) −x, y−1/2, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5298).

References

  1. Bruker (2005). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Eltayeb, N. E., Teoh, S. G., Teh, J. B.-J., Fun, H.-K. & Ibrahim, K. (2007). Acta Cryst. E63, o117–o119.
  3. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810000346/hb5298sup1.cif

e-66-0o309-sup1.cif (18.6KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810000346/hb5298Isup2.hkl

e-66-0o309-Isup2.hkl (80.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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