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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Jan 30;66(Pt 2):o476. doi: 10.1107/S1600536809055688

4-[4-(3-Methoxy­benzamido)phen­oxy]-N-methyl­picolinamide

Na-Na Meng a, Ting-Ting Huang a, De-Kuan Li b, Wen-Xin Zhang c, Luo-Ting Yu a,*
PMCID: PMC2979880  PMID: 21579885

Abstract

In the title compound, C21H19N3O4, the central benzene ring makes dihedral angles of 78.54 (6) and 75.30 (6)° with the pyridine and 3-methoxy­phenyl rings, respectively. An intra­molecular N—H⋯N interaction occurs, generating an S(?). The crystal packing shows inter­molecular N—H⋯O hydrogen-bonding inter­actions between the N—H groups and the O atoms of the 3-methoxy­phenyl ring and the carbonyl groups of the amide functions. Inter­molecular C—H⋯O inter­actions are also present.

Related literature

For related compounds and their biological activity, see: Khire et al. (2004); Dominguez et al. (2007).graphic file with name e-66-0o476-scheme1.jpg

Experimental

Crystal data

  • C21H19N3O4

  • M r = 377.39

  • Triclinic, Inline graphic

  • a = 5.0915 (10) Å

  • b = 8.3251 (17) Å

  • c = 11.611 (2) Å

  • α = 71.29 (3)°

  • β = 87.74 (3)°

  • γ = 76.10 (3)°

  • V = 452.14 (16) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 113 K

  • 0.34 × 0.29 × 0.19 mm

Data collection

  • Rigaku Saturn CCD area-detector diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.968, T max = 0.982

  • 3733 measured reflections

  • 2108 independent reflections

  • 1811 reflections with I > 2σ(I)

  • R int = 0.026

Refinement

  • R[F 2 > 2σ(F 2)] = 0.035

  • wR(F 2) = 0.085

  • S = 1.10

  • 2108 reflections

  • 263 parameters

  • 3 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.22 e Å−3

  • Δρmin = −0.24 e Å−3

Data collection: CrystalClear (Rigaku/MSC, 2005); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996); software used to prepare material for publication: PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809055688/om2308sup1.cif

e-66-0o476-sup1.cif (21.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809055688/om2308Isup2.hkl

e-66-0o476-Isup2.hkl (103.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1N⋯O2i 0.89 (3) 2.08 (3) 2.918 (2) 155 (3)
N3—H3N⋯O1ii 0.85 (3) 2.38 (3) 3.148 (3) 151 (2)
N3—H3N⋯N2 0.85 (3) 2.33 (3) 2.681 (3) 105 (2)
C7—H7B⋯O4iii 0.98 2.55 3.475 (3) 158

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The project was sponsored by the Scientific Research Foundation for Returned Overseas Chinese Scholars (No. 20071108–18–14), State Education Ministry. We thank the Analytical and Testing Center of Sichuan University for the X-ray measurements.

supplementary crystallographic information

Comment

Sorafenib is of great importance owing to its antitumor properties (Khire et al., 2004; Dominguez et al., 2007). The title compound, as one of its derivatives, possessed even better in vitro anticancer activity against both two tumor cell lines (HCT116 and HEPG2). As a potent antitumor drug, we report here its crystal structure.

In the title molecule, C21H19N3O4, (Fig.1), the phenyl ring makes dihedral angles of 78.54 (6)° and 75.30 (6)° with the pyridine ring and the 3-methoxyphenyl ring, respectively. In the crystal structure, intermolecular N—H···O hydrogen-bonding interactions between the N—H and O atoms of 3-methoxyphenyl ring and carbonyl groups of the amide functionalities form an infinite three-dimensional structure (Table 1 and Fig. 2).

Experimental

To the suspension of anhydrous potassium carbonate (1.635 g,12.5 mmol) and 4-(4-aminophenoxy)-N-methylpicolinamide (1.22 g, 5 mmol) in 11.4 ml THF was added dropwise 3-methoxybenzoyl chloride(1.28 g,7.5 mmol). After being stirred at room temperature for 2 h, the mixture was extracted with 90 ml EA and 30 ml water for three times and the combined organic layers were dried over anhydrous Na2SO4. Then the solution was concentrated under vacuum, and the residue was recrystallized from ethanol to give the title compound. Crystals suitable for X-ray analysis were obtained by slow evaporation from a solution of ethanol.

Refinement

The two H atoms of N1 and N3 were located in a difference map and refined isotropically. The reminaing H atoms were positioned geometrically (C—H = 0.95–0.98 Å) and refined using a riding model, with Uiso(H) = 1.2–1.5Ueq(C). In the final stages of refinement, Friedel-pair reflections were merged.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level.

Fig. 2.

Fig. 2.

The cell packing of the title compound.

Crystal data

C21H19N3O4 Z = 1
Mr = 377.39 F(000) = 198
Triclinic, P1 Dx = 1.386 Mg m3
a = 5.0915 (10) Å Mo Kα radiation, λ = 0.71073 Å
b = 8.3251 (17) Å Cell parameters from 1652 reflections
c = 11.611 (2) Å θ = 2.7–27.8°
α = 71.29 (3)° µ = 0.10 mm1
β = 87.74 (3)° T = 113 K
γ = 76.10 (3)° Block, colourless
V = 452.14 (16) Å3 0.34 × 0.29 × 0.19 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer 2108 independent reflections
Radiation source: rotating anode 1811 reflections with I > 2σ(I)
confocal Rint = 0.026
Detector resolution: 7.31 pixels mm-1 θmax = 27.8°, θmin = 2.7°
ω and φ scans h = −6→4
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) k = −10→10
Tmin = 0.968, Tmax = 0.982 l = −14→15
3733 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035 Hydrogen site location: mixed
wR(F2) = 0.085 H atoms treated by a mixture of independent and constrained refinement
S = 1.10 w = 1/[σ2(Fo2) + (0.0481P)2] where P = (Fo2 + 2Fc2)/3
2108 reflections (Δ/σ)max < 0.001
263 parameters Δρmax = 0.22 e Å3
3 restraints Δρmin = −0.24 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 −0.3679 (3) 1.5504 (2) 0.23318 (15) 0.0212 (4)
O2 −0.1469 (3) 0.9491 (2) 0.56055 (17) 0.0249 (4)
O3 0.4394 (3) 0.1895 (2) 0.81518 (15) 0.0220 (4)
O4 1.1345 (3) 0.2263 (2) 1.10678 (16) 0.0230 (4)
N1 0.3007 (3) 0.9089 (2) 0.60459 (17) 0.0154 (4)
H1N 0.443 (6) 0.954 (4) 0.579 (3) 0.031 (8)*
N2 1.0377 (4) −0.1617 (2) 1.06587 (18) 0.0197 (4)
N3 1.3326 (4) −0.0601 (3) 1.20340 (18) 0.0202 (4)
H3N 1.353 (6) −0.166 (4) 1.208 (3) 0.025 (7)*
C1 0.0404 (4) 1.1969 (3) 0.48677 (19) 0.0138 (4)
C2 −0.1555 (4) 1.2811 (3) 0.3920 (2) 0.0157 (4)
H2 −0.2683 1.2179 0.3713 0.019*
C3 −0.1849 (4) 1.4569 (3) 0.3282 (2) 0.0166 (5)
C4 −0.0230 (4) 1.5503 (3) 0.3610 (2) 0.0186 (5)
H4 −0.0441 1.6711 0.3181 0.022*
C5 0.1675 (4) 1.4670 (3) 0.4559 (2) 0.0196 (5)
H5 0.2754 1.5316 0.4784 0.024*
C6 0.2036 (4) 1.2891 (3) 0.5190 (2) 0.0167 (5)
H6 0.3377 1.2318 0.5830 0.020*
C7 −0.4855 (5) 1.4516 (3) 0.1769 (2) 0.0240 (5)
H7A −0.6035 1.3902 0.2340 0.036*
H7B −0.3410 1.3663 0.1549 0.036*
H7C −0.5919 1.5310 0.1034 0.036*
C8 0.0553 (4) 1.0091 (3) 0.5533 (2) 0.0163 (4)
C9 0.3486 (4) 0.7259 (3) 0.66625 (19) 0.0145 (4)
C10 0.5761 (4) 0.6131 (3) 0.6406 (2) 0.0162 (4)
H10 0.7046 0.6589 0.5865 0.019*
C11 0.6152 (4) 0.4336 (3) 0.6942 (2) 0.0190 (5)
H11 0.7689 0.3560 0.6763 0.023*
C12 0.4271 (4) 0.3690 (3) 0.7740 (2) 0.0174 (5)
C13 0.2105 (4) 0.4795 (3) 0.8055 (2) 0.0213 (5)
H13 0.0892 0.4336 0.8640 0.026*
C14 0.1710 (4) 0.6586 (3) 0.7512 (2) 0.0204 (5)
H14 0.0215 0.7356 0.7723 0.025*
C15 0.6403 (4) 0.0792 (3) 0.8978 (2) 0.0169 (5)
C16 0.6760 (5) −0.0977 (3) 0.9182 (2) 0.0194 (5)
H16 0.5661 −0.1394 0.8757 0.023*
C17 0.8763 (5) −0.2126 (3) 1.0024 (2) 0.0210 (5)
H17 0.9012 −0.3341 1.0161 0.025*
C18 0.9936 (4) 0.0107 (3) 1.0450 (2) 0.0163 (4)
C19 0.8000 (4) 0.1369 (3) 0.9625 (2) 0.0161 (4)
H19 0.7777 0.2578 0.9509 0.019*
C20 1.1623 (4) 0.0692 (3) 1.1206 (2) 0.0172 (5)
C21 1.4960 (5) −0.0250 (3) 1.2878 (2) 0.0220 (5)
H21A 1.3916 0.0733 1.3122 0.033*
H21B 1.6598 0.0043 1.2484 0.033*
H21C 1.5470 −0.1288 1.3599 0.033*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0201 (8) 0.0162 (9) 0.0232 (9) −0.0018 (6) −0.0079 (6) −0.0016 (7)
O2 0.0138 (7) 0.0175 (8) 0.0376 (10) −0.0063 (6) −0.0052 (7) 0.0017 (7)
O3 0.0228 (8) 0.0134 (8) 0.0260 (9) −0.0053 (6) −0.0103 (7) 0.0010 (7)
O4 0.0243 (8) 0.0170 (9) 0.0262 (9) −0.0024 (6) −0.0048 (7) −0.0060 (7)
N1 0.0118 (8) 0.0135 (9) 0.0184 (9) −0.0030 (7) 0.0003 (7) −0.0017 (8)
N2 0.0229 (10) 0.0139 (10) 0.0209 (10) −0.0021 (7) −0.0008 (8) −0.0053 (8)
N3 0.0245 (10) 0.0165 (11) 0.0183 (10) −0.0019 (8) −0.0045 (8) −0.0054 (8)
C1 0.0115 (9) 0.0125 (10) 0.0163 (11) −0.0010 (7) 0.0023 (8) −0.0047 (8)
C2 0.0125 (9) 0.0155 (11) 0.0195 (11) −0.0034 (8) 0.0000 (8) −0.0059 (9)
C3 0.0138 (10) 0.0149 (11) 0.0180 (11) −0.0004 (8) −0.0001 (8) −0.0032 (9)
C4 0.0187 (11) 0.0121 (11) 0.0227 (12) −0.0029 (8) 0.0017 (9) −0.0032 (9)
C5 0.0179 (11) 0.0174 (12) 0.0260 (13) −0.0069 (8) 0.0007 (9) −0.0085 (10)
C6 0.0136 (10) 0.0171 (12) 0.0189 (11) −0.0029 (8) −0.0014 (8) −0.0056 (9)
C7 0.0237 (12) 0.0198 (12) 0.0272 (12) 0.0009 (9) −0.0095 (10) −0.0088 (10)
C8 0.0139 (10) 0.0159 (11) 0.0174 (11) −0.0024 (8) 0.0000 (8) −0.0038 (9)
C9 0.0134 (9) 0.0137 (11) 0.0142 (10) −0.0016 (8) −0.0038 (8) −0.0021 (8)
C10 0.0129 (10) 0.0169 (11) 0.0179 (11) −0.0037 (8) 0.0012 (8) −0.0043 (9)
C11 0.0168 (10) 0.0166 (11) 0.0217 (11) −0.0005 (8) −0.0025 (9) −0.0057 (9)
C12 0.0200 (11) 0.0130 (11) 0.0164 (11) −0.0055 (8) −0.0073 (9) 0.0010 (9)
C13 0.0188 (11) 0.0206 (12) 0.0206 (12) −0.0061 (8) 0.0018 (9) −0.0006 (9)
C14 0.0177 (11) 0.0209 (12) 0.0185 (11) −0.0017 (8) 0.0027 (8) −0.0031 (9)
C15 0.0168 (10) 0.0147 (11) 0.0146 (11) −0.0018 (8) −0.0010 (8) 0.0002 (9)
C16 0.0229 (11) 0.0179 (12) 0.0190 (11) −0.0069 (9) 0.0001 (8) −0.0064 (9)
C17 0.0276 (12) 0.0116 (10) 0.0220 (12) −0.0034 (8) 0.0005 (9) −0.0040 (9)
C18 0.0182 (11) 0.0152 (11) 0.0143 (10) −0.0053 (8) 0.0034 (8) −0.0027 (9)
C19 0.0189 (10) 0.0131 (10) 0.0147 (10) −0.0043 (8) 0.0014 (8) −0.0021 (9)
C20 0.0155 (10) 0.0195 (12) 0.0162 (11) −0.0034 (8) 0.0022 (8) −0.0060 (9)
C21 0.0206 (11) 0.0253 (13) 0.0203 (11) −0.0024 (9) −0.0031 (9) −0.0091 (10)

Geometric parameters (Å, °)

O1—C3 1.369 (3) C7—H7A 0.9800
O1—C7 1.440 (3) C7—H7B 0.9800
O2—C8 1.237 (3) C7—H7C 0.9800
O3—C15 1.368 (3) C9—C14 1.387 (3)
O3—C12 1.402 (3) C9—C10 1.394 (3)
O4—C20 1.239 (3) C10—C11 1.389 (3)
N1—C8 1.360 (3) C10—H10 0.9500
N1—C9 1.424 (3) C11—C12 1.387 (3)
N1—H1N 0.89 (3) C11—H11 0.9500
N2—C18 1.340 (3) C12—C13 1.376 (3)
N2—C17 1.346 (3) C13—C14 1.387 (3)
N3—C20 1.337 (3) C13—H13 0.9500
N3—C21 1.450 (3) C14—H14 0.9500
N3—H3N 0.85 (3) C15—C16 1.382 (3)
C1—C6 1.391 (3) C15—C19 1.387 (3)
C1—C2 1.397 (3) C16—C17 1.386 (3)
C1—C8 1.491 (3) C16—H16 0.9500
C2—C3 1.386 (3) C17—H17 0.9500
C2—H2 0.9500 C18—C19 1.387 (3)
C3—C4 1.397 (3) C18—C20 1.510 (3)
C4—C5 1.380 (3) C19—H19 0.9500
C4—H4 0.9500 C21—H21A 0.9800
C5—C6 1.396 (3) C21—H21B 0.9800
C5—H5 0.9500 C21—H21C 0.9800
C6—H6 0.9500
C3—O1—C7 116.81 (17) C11—C10—C9 120.1 (2)
C15—O3—C12 119.17 (17) C11—C10—H10 120.0
C8—N1—C9 122.98 (18) C9—C10—H10 120.0
C8—N1—H1N 116 (2) C12—C11—C10 119.2 (2)
C9—N1—H1N 118 (2) C12—C11—H11 120.4
C18—N2—C17 116.25 (18) C10—C11—H11 120.4
C20—N3—C21 121.4 (2) C13—C12—C11 121.2 (2)
C20—N3—H3N 122 (2) C13—C12—O3 118.26 (19)
C21—N3—H3N 117 (2) C11—C12—O3 120.3 (2)
C6—C1—C2 120.42 (19) C12—C13—C14 119.4 (2)
C6—C1—C8 122.61 (19) C12—C13—H13 120.3
C2—C1—C8 116.91 (19) C14—C13—H13 120.3
C3—C2—C1 119.96 (19) C13—C14—C9 120.4 (2)
C3—C2—H2 120.0 C13—C14—H14 119.8
C1—C2—H2 120.0 C9—C14—H14 119.8
O1—C3—C2 124.4 (2) O3—C15—C16 116.9 (2)
O1—C3—C4 115.84 (19) O3—C15—C19 123.2 (2)
C2—C3—C4 119.77 (19) C16—C15—C19 119.86 (19)
C5—C4—C3 120.0 (2) C15—C16—C17 118.2 (2)
C5—C4—H4 120.0 C15—C16—H16 120.9
C3—C4—H4 120.0 C17—C16—H16 120.9
C4—C5—C6 120.8 (2) N2—C17—C16 123.7 (2)
C4—C5—H5 119.6 N2—C17—H17 118.1
C6—C5—H5 119.6 C16—C17—H17 118.1
C1—C6—C5 119.04 (19) N2—C18—C19 124.8 (2)
C1—C6—H6 120.5 N2—C18—C20 116.87 (18)
C5—C6—H6 120.5 C19—C18—C20 118.32 (19)
O1—C7—H7A 109.5 C18—C19—C15 117.2 (2)
O1—C7—H7B 109.5 C18—C19—H19 121.4
H7A—C7—H7B 109.5 C15—C19—H19 121.4
O1—C7—H7C 109.5 O4—C20—N3 124.1 (2)
H7A—C7—H7C 109.5 O4—C20—C18 120.93 (19)
H7B—C7—H7C 109.5 N3—C20—C18 115.0 (2)
O2—C8—N1 122.4 (2) N3—C21—H21A 109.5
O2—C8—C1 120.97 (19) N3—C21—H21B 109.5
N1—C8—C1 116.65 (19) H21A—C21—H21B 109.5
C14—C9—C10 119.6 (2) N3—C21—H21C 109.5
C14—C9—N1 120.77 (18) H21A—C21—H21C 109.5
C10—C9—N1 119.64 (19) H21B—C21—H21C 109.5
C6—C1—C2—C3 1.0 (3) C15—O3—C12—C13 −113.2 (2)
C8—C1—C2—C3 178.42 (18) C15—O3—C12—C11 72.9 (3)
C7—O1—C3—C2 −16.6 (3) C11—C12—C13—C14 3.7 (3)
C7—O1—C3—C4 164.13 (19) O3—C12—C13—C14 −170.2 (2)
C1—C2—C3—O1 179.13 (19) C12—C13—C14—C9 −0.3 (3)
C1—C2—C3—C4 −1.6 (3) C10—C9—C14—C13 −3.6 (3)
O1—C3—C4—C5 −180.0 (2) N1—C9—C14—C13 176.2 (2)
C2—C3—C4—C5 0.7 (3) C12—O3—C15—C16 −168.06 (19)
C3—C4—C5—C6 0.8 (3) C12—O3—C15—C19 13.8 (3)
C2—C1—C6—C5 0.5 (3) O3—C15—C16—C17 −179.4 (2)
C8—C1—C6—C5 −176.77 (19) C19—C15—C16—C17 −1.1 (3)
C4—C5—C6—C1 −1.4 (3) C18—N2—C17—C16 0.8 (3)
C9—N1—C8—O2 2.7 (3) C15—C16—C17—N2 0.3 (4)
C9—N1—C8—C1 −177.13 (19) C17—N2—C18—C19 −1.2 (3)
C6—C1—C8—O2 149.6 (2) C17—N2—C18—C20 176.7 (2)
C2—C1—C8—O2 −27.7 (3) N2—C18—C19—C15 0.3 (3)
C6—C1—C8—N1 −30.6 (3) C20—C18—C19—C15 −177.45 (19)
C2—C1—C8—N1 152.10 (19) O3—C15—C19—C18 178.95 (19)
C8—N1—C9—C14 −46.8 (3) C16—C15—C19—C18 0.8 (3)
C8—N1—C9—C10 133.0 (2) C21—N3—C20—O4 1.9 (3)
C14—C9—C10—C11 4.1 (3) C21—N3—C20—C18 −176.19 (19)
N1—C9—C10—C11 −175.67 (19) N2—C18—C20—O4 179.9 (2)
C9—C10—C11—C12 −0.7 (3) C19—C18—C20—O4 −2.2 (3)
C10—C11—C12—C13 −3.2 (3) N2—C18—C20—N3 −2.0 (3)
C10—C11—C12—O3 170.56 (18) C19—C18—C20—N3 175.94 (19)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1N···O2i 0.89 (3) 2.08 (3) 2.918 (2) 155 (3)
N3—H3N···O1ii 0.85 (3) 2.38 (3) 3.148 (3) 151 (2)
N3—H3N···N2 0.85 (3) 2.33 (3) 2.681 (3) 105 (2)
C7—H7B···O4iii 0.98 2.55 3.475 (3) 158
C14—H14···O2 0.95 2.56 2.887 (3) 100

Symmetry codes: (i) x+1, y, z; (ii) x+2, y−2, z+1; (iii) x−1, y+1, z−1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: OM2308).

References

  1. Burnett, M. N. & Johnson, C. K. (1996). ORTEPIII Report ORNL-6895. Oak Ridge National Laboratory, Tennessee, USA.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809055688/om2308sup1.cif

e-66-0o476-sup1.cif (21.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809055688/om2308Isup2.hkl

e-66-0o476-Isup2.hkl (103.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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