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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Jan 16;66(Pt 2):o379. doi: 10.1107/S1600536810001479

trans-1-Phenyl­pyrrolidine-2,5-dicarbo­nitrile

Wei Han a, Armin R Ofial a, Peter Mayer a,*
PMCID: PMC2979938  PMID: 21579801

Abstract

In the title compound, C12H11N3, the plane of the phenyl ring and the least-squares plane of the pyrrolidine ring enclose an angle of 14.30 (6)°. The intra­cyclic N atom features a nearly trigonal-planar coordination geometry due to π-inter­actions with the aromatic system. The pyrrolidine ring is present in a twist conformation for which the closest pucker descriptor is C9 T C8. Weak inter­molecular C—H⋯N and C—H⋯π contacts occur

Related literature

For background to the synthesis, see: Han & Ofial (2009); Takahashi et al. (1986). For a related structure, see: Menezes et al. (2007). For puckering analysis, see: Cremer & Pople (1975).graphic file with name e-66-0o379-scheme1.jpg

Experimental

Crystal data

  • C12H11N3

  • M r = 197.24

  • Orthorhombic, Inline graphic

  • a = 9.1807 (1) Å

  • b = 14.5693 (2) Å

  • c = 15.7576 (2) Å

  • V = 2107.68 (5) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 200 K

  • 0.33 × 0.18 × 0.15 mm

Data collection

  • Nonius KappaCCD diffractometer

  • 16161 measured reflections

  • 2413 independent reflections

  • 2109 reflections with I > 2σ(I)

  • R int = 0.022

Refinement

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.107

  • S = 1.06

  • 2413 reflections

  • 136 parameters

  • H-atom parameters constrained

  • Δρmax = 0.14 e Å−3

  • Δρmin = −0.18 e Å−3

Data collection: COLLECT (Hooft, 2004); cell refinement: SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810001479/fl2285sup1.cif

e-66-0o379-sup1.cif (16.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810001479/fl2285Isup2.hkl

e-66-0o379-Isup2.hkl (118.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg is the centroid of the C1–C6 ring.

D—H⋯A D—H H⋯A DA D—H⋯A
C6—H6⋯N2i 0.95 2.70 3.5952 (17) 158
C8—H8B⋯N2ii 0.99 2.67 3.3777 (17) 129
C10—H10⋯N3iii 1.00 2.69 3.3748 (15) 126
C8—H8ACgi 0.99 2.74 3.6937 (13) 162
C9—H9BCgiv 0.99 2.88 3.5111 (13) 122

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

We thank the Chinese Scholarship Council for a fellowship (to WH) and Professor Herbert Mayr for continuous support.

supplementary crystallographic information

Comment

Under oxidative conditions, iron salts activate C(sp3)-H bonds adjacent to the nitrogen atom of tertiary amines. Hence the cross-coupling reactions of a variety of tertiary amines with cyanide were enabled in the presence of tert-butylhydroperoxide. Performing the reaction in the presence of 4 equivalents of trimethylsilyl cyanide allowed the twofold cyanation of N-phenylpyrrolidine [Han et al. (2009)].

The asymmetric unit of (I) contains one complete molecule which is shown in Figure 1. The plane of the phenyl ring and the least-square plane of the pyrrolidine ring enclose an angle of 14.30 (6)°, which is quite similar to the angle found in a related structure of 1,2-Dichloro-4-(pyrrolidino)-5-nitrobenzene (18.69 (14)°, Menezes et al. (2007)).

The intracyclic nitrogen atom is nearly in the plane defined by the three carbon atoms bonded to it. The displacement of the nitrogen atom from the plane is only 0.073 (1) Å. The planarization of the nitrogen atom may be rationalized by possible π-interaction of the lone pair with the aromatic system.

The pyrrolidine ring is present in a twist-conformation for which the closest pucker descriptor is C9TC8 [Cremer et al. (1975)]. This conformation is slightly distorted towards an envelope-conformation EC8. In a related structure [Menezes et al. (2007)], the ring is twisted along the same bond, however, in the other direction (C8TC9).

Both carbonitrile nitrogen atoms act as acceptors in very weak contacts of the type C–H···N. Furthermore the packing features very weak C–H···π contacts with the phenyl π-system as acceptor. The packing of the title compound is shown in Figure 2.

Experimental

Under an atmosphere of dry nitrogen, a 25 ml Schlenk flask was charged with FeCl2 (10 mol-/%, 13 mg). Then N-phenylpyrrolidine (1.0 mmol), trimethylsilyl cyanide (4.0 mmol, 0.54 ml), and MeOH (2.0 ml) were added successively by syringe. To the mixture was added dropwise tert-butylhydroperoxide (2.5 mmol, 0.470 ml, 5.5 M solution in decane) over a period of 5 minutes. The mixture was stirred at room temperature for 24 h. Subsequently, the reaction mixture was poured into a saturated aqueous NaCl solution (20 ml) and extracted with dichloromethane (three times 20 ml). The organic phases were combined, and the volatile components were evaporated in a rotary evaporator. After column chromatography on silica gel (n-pentane/diethyl ether = 3:1, v/v), 1-phenylpyrrolidine-2,5-dicarbonitrile was isolated as a colorless solid (54%) [Han et al. (2009)].

The title compound (50 mg) was dissolved in 2 ml of a mixture of dichloromethane/n-pentane/ethyl ether mixture (2/1/1, v/v/v). The solvent was allowed to evaporate slowly at room temperature. The thus formed crystals were suitable for X-ray analysis. mp 149–151 °C ([Takahashi et al. (1986)], mp 161.5–163 °C (from ethanol)).

Refinement

All H atoms were found in difference maps. The H atoms were positioned geometrically (bond distances for phenyl-CH: 0.95 Å, for aliphatic CH: 1.00 Å, for aliphatic CH2: 0.99 Å) and treated as riding on their parent atoms [Uiso(H) = 1.2Ueq(C)].

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with atom labels and anisotropic displacement ellipsoids (drawn at 50% probability level) for non-H atoms.

Fig. 2.

Fig. 2.

The packing of the title compound viewed along [-100].

Crystal data

C12H11N3 F(000) = 832
Mr = 197.24 Dx = 1.243 (1) Mg m3
Orthorhombic, Pbca Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2ab Cell parameters from 9019 reflections
a = 9.1807 (1) Å θ = 3.1–27.5°
b = 14.5693 (2) Å µ = 0.08 mm1
c = 15.7576 (2) Å T = 200 K
V = 2107.68 (5) Å3 Block, colourless
Z = 8 0.33 × 0.18 × 0.15 mm

Data collection

Nonius KappaCCD diffractometer 2109 reflections with I > 2σ(I)
Radiation source: rotating anode Rint = 0.022
MONTEL, graded multilayered X-ray optics θmax = 27.5°, θmin = 3.4°
Detector resolution: 9 pixels mm-1 h = −11→11
CCD; rotation images; thick slices, phi/ω–scan k = −18→18
16161 measured reflections l = −20→20
2413 independent reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.049P)2 + 0.5393P] where P = (Fo2 + 2Fc2)/3
2413 reflections (Δ/σ)max < 0.001
136 parameters Δρmax = 0.14 e Å3
0 restraints Δρmin = −0.18 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on all data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.91889 (10) 0.12762 (7) 0.48710 (6) 0.0339 (2)
N2 0.63244 (13) 0.15665 (9) 0.34906 (8) 0.0515 (3)
N3 1.27530 (11) 0.14135 (8) 0.55151 (7) 0.0460 (3)
C1 0.84192 (11) 0.11277 (7) 0.56211 (6) 0.0289 (2)
C2 0.71584 (12) 0.05831 (8) 0.56245 (7) 0.0331 (3)
H2 0.6806 0.0329 0.5109 0.040*
C3 0.64254 (13) 0.04149 (8) 0.63784 (8) 0.0395 (3)
H3 0.5569 0.0049 0.6373 0.047*
C4 0.69229 (13) 0.07717 (9) 0.71358 (8) 0.0414 (3)
H4 0.6423 0.0647 0.7651 0.050*
C5 0.81566 (13) 0.13119 (9) 0.71352 (7) 0.0393 (3)
H5 0.8501 0.1561 0.7655 0.047*
C6 0.89031 (12) 0.14984 (8) 0.63898 (7) 0.0338 (3)
H6 0.9744 0.1878 0.6401 0.041*
C7 0.87833 (12) 0.08771 (7) 0.40605 (6) 0.0313 (2)
H7 0.8707 0.0195 0.4112 0.038*
C8 1.00567 (13) 0.11327 (8) 0.34813 (7) 0.0385 (3)
H8A 1.0857 0.0680 0.3527 0.046*
H8B 0.9742 0.1176 0.2882 0.046*
C9 1.05183 (14) 0.20663 (8) 0.38243 (8) 0.0405 (3)
H9A 0.9888 0.2561 0.3598 0.049*
H9B 1.1544 0.2202 0.3676 0.049*
C10 1.03301 (11) 0.19671 (7) 0.47859 (7) 0.0326 (3)
H10 1.0003 0.2562 0.5038 0.039*
C11 0.73934 (13) 0.12635 (8) 0.37363 (7) 0.0349 (3)
C12 1.16995 (12) 0.16549 (7) 0.51982 (7) 0.0342 (3)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0323 (5) 0.0433 (5) 0.0262 (5) −0.0116 (4) 0.0000 (4) 0.0001 (4)
N2 0.0473 (7) 0.0588 (7) 0.0483 (6) 0.0060 (5) −0.0134 (5) −0.0106 (5)
N3 0.0382 (6) 0.0456 (6) 0.0542 (7) −0.0001 (5) −0.0083 (5) −0.0055 (5)
C1 0.0275 (5) 0.0320 (5) 0.0270 (5) 0.0013 (4) −0.0005 (4) 0.0025 (4)
C2 0.0315 (6) 0.0356 (6) 0.0321 (5) −0.0039 (4) 0.0000 (4) −0.0001 (4)
C3 0.0342 (6) 0.0412 (6) 0.0432 (6) −0.0030 (5) 0.0068 (5) 0.0056 (5)
C4 0.0421 (7) 0.0493 (7) 0.0327 (6) 0.0067 (5) 0.0094 (5) 0.0067 (5)
C5 0.0426 (7) 0.0476 (6) 0.0277 (5) 0.0067 (5) −0.0022 (5) −0.0020 (5)
C6 0.0311 (6) 0.0391 (6) 0.0311 (6) 0.0004 (4) −0.0027 (4) −0.0014 (4)
C7 0.0351 (6) 0.0322 (5) 0.0267 (5) −0.0007 (4) 0.0003 (4) 0.0000 (4)
C8 0.0388 (6) 0.0453 (7) 0.0315 (6) 0.0038 (5) 0.0070 (5) 0.0045 (5)
C9 0.0384 (6) 0.0427 (6) 0.0405 (6) −0.0041 (5) 0.0031 (5) 0.0128 (5)
C10 0.0290 (5) 0.0310 (5) 0.0379 (6) −0.0032 (4) 0.0005 (4) 0.0036 (4)
C11 0.0387 (6) 0.0369 (6) 0.0289 (5) −0.0030 (5) −0.0031 (5) −0.0057 (4)
C12 0.0328 (6) 0.0312 (5) 0.0388 (6) −0.0052 (4) 0.0003 (5) −0.0022 (4)

Geometric parameters (Å, °)

N1—C1 1.3939 (13) C5—H5 0.9500
N1—C7 1.4519 (14) C6—H6 0.9500
N1—C10 1.4591 (13) C7—C11 1.4853 (16)
N2—C11 1.1437 (16) C7—C8 1.5291 (15)
N3—C12 1.1438 (16) C7—H7 1.0000
C1—C6 1.3987 (15) C8—C9 1.5238 (17)
C1—C2 1.4034 (15) C8—H8A 0.9900
C2—C3 1.3873 (15) C8—H8B 0.9900
C2—H2 0.9500 C9—C10 1.5320 (16)
C3—C4 1.3796 (18) C9—H9A 0.9900
C3—H3 0.9500 C9—H9B 0.9900
C4—C5 1.3791 (18) C10—C12 1.4864 (15)
C4—H4 0.9500 C10—H10 1.0000
C5—C6 1.3868 (16)
C1—N1—C7 123.63 (9) N1—C7—H7 110.2
C1—N1—C10 123.29 (9) C11—C7—H7 110.2
C7—N1—C10 112.31 (8) C8—C7—H7 110.2
N1—C1—C6 120.89 (10) C9—C8—C7 102.62 (9)
N1—C1—C2 120.60 (9) C9—C8—H8A 111.2
C6—C1—C2 118.49 (10) C7—C8—H8A 111.2
C3—C2—C1 120.22 (10) C9—C8—H8B 111.2
C3—C2—H2 119.9 C7—C8—H8B 111.2
C1—C2—H2 119.9 H8A—C8—H8B 109.2
C4—C3—C2 120.91 (11) C8—C9—C10 103.60 (9)
C4—C3—H3 119.5 C8—C9—H9A 111.0
C2—C3—H3 119.5 C10—C9—H9A 111.0
C5—C4—C3 119.10 (11) C8—C9—H9B 111.0
C5—C4—H4 120.5 C10—C9—H9B 111.0
C3—C4—H4 120.5 H9A—C9—H9B 109.0
C4—C5—C6 121.22 (11) N1—C10—C12 110.86 (9)
C4—C5—H5 119.4 N1—C10—C9 103.71 (9)
C6—C5—H5 119.4 C12—C10—C9 111.46 (9)
C5—C6—C1 120.06 (11) N1—C10—H10 110.2
C5—C6—H6 120.0 C12—C10—H10 110.2
C1—C6—H6 120.0 C9—C10—H10 110.2
N1—C7—C11 111.78 (9) N2—C11—C7 179.49 (13)
N1—C7—C8 103.38 (9) N3—C12—C10 179.91 (15)
C11—C7—C8 111.05 (9)
C7—N1—C1—C6 177.08 (10) C10—N1—C7—C11 −102.29 (11)
C10—N1—C1—C6 −13.76 (16) C1—N1—C7—C8 −172.55 (10)
C7—N1—C1—C2 −1.36 (16) C10—N1—C7—C8 17.22 (12)
C10—N1—C1—C2 167.81 (10) N1—C7—C8—C9 −33.54 (11)
N1—C1—C2—C3 177.94 (10) C11—C7—C8—C9 86.48 (11)
C6—C1—C2—C3 −0.53 (16) C7—C8—C9—C10 37.66 (11)
C1—C2—C3—C4 −0.45 (18) C1—N1—C10—C12 76.32 (13)
C2—C3—C4—C5 0.83 (18) C7—N1—C10—C12 −113.42 (10)
C3—C4—C5—C6 −0.22 (18) C1—N1—C10—C9 −163.96 (10)
C4—C5—C6—C1 −0.78 (18) C7—N1—C10—C9 6.30 (12)
N1—C1—C6—C5 −177.33 (10) C8—C9—C10—N1 −27.35 (12)
C2—C1—C6—C5 1.14 (16) C8—C9—C10—C12 91.97 (11)
C1—N1—C7—C11 67.93 (13)

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C1–C6 ring.
D—H···A D—H H···A D···A D—H···A
C6—H6···N2i 0.95 2.70 3.5952 (17) 158
C8—H8B···N2ii 0.99 2.67 3.3777 (17) 129
C10—H10···N3iii 1.00 2.69 3.3748 (15) 126
C8—H8A···Cgi 0.99 2.74 3.6937 (13) 162
C9—H9B···Cgiv 0.99 2.88 3.5111 (13) 122

Symmetry codes: (i) x+1/2, −y+1/2, −z+1; (ii) x+1/2, y, −z+1/2; (iii) x−1/2, −y+1/2, −z+1; (iv) −x+2, −y, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FL2285).

References

  1. Altomare, A., Burla, M. C., Camalli, M., Cascarano, G. L., Giacovazzo, C., Guagliardi, A., Moliterni, A. G. G., Polidori, G. & Spagna, R. (1999). J. Appl. Cryst.32, 115–119.
  2. Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc.97, 1354–1358.
  3. Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
  4. Han, W. & Ofial, A. R. (2009). Chem. Commun. pp. 5024–5026. [DOI] [PubMed]
  5. Hooft, R. W. W. (2004). COLLECT Bruker–Nonius BV, Delft, The Netherlands.
  6. Menezes, F. G., Ricardo, J., Dias, R., Bortoluzzi, A. J. & Zucco, C. (2007). Quim. Nova, 30, 356–359.
  7. Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  9. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  10. Takahashi, K., Saitoh, H., Ogura, K. & Iida, H. (1986). Heterocycles, 24, 2905–2910.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810001479/fl2285sup1.cif

e-66-0o379-sup1.cif (16.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810001479/fl2285Isup2.hkl

e-66-0o379-Isup2.hkl (118.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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