Abstract
The asymmetric unit of the title 1:2 adduct, C12H10N4·2C8H8O2, comprises a single molecule of 2-phenylacetic acid and half a molecule of 3-pyridinealdazine; the latter is completed by crystallographic inversion symmetry. In the crystal, molecules are connected into a three-component aggregate via O—H⋯N hydrogen bonds. As the carboxyl group lies above the plane through the benzene ring to which it is attached [C—C—C—C = 62.24 (17)°] and the 4-pyridinealdazine molecule is almost planar (r.m.s. deviation of the 16 non-H atoms = 0.027 Å), the overall shape of the aggregate is that of a flattened extended chair. Layers of these aggregates are connected by C—H⋯O and C—H⋯π interactions and stack parallel to (220).
Related literature
For related studies on co-crystal formation involving the isomeric n-pyridinealdazines, see: Broker et al. (2008 ▶); Arman et al. (2010a
▶,b
▶).
Experimental
Crystal data
C12H10N4·2C8H8O2
M r = 482.53
Triclinic,
a = 5.511 (2) Å
b = 9.536 (4) Å
c = 12.434 (6) Å
α = 80.30 (2)°
β = 88.45 (3)°
γ = 76.46 (2)°
V = 626.1 (5) Å3
Z = 1
Mo Kα radiation
μ = 0.09 mm−1
T = 98 K
0.52 × 0.32 × 0.10 mm
Data collection
Rigaku AFC12/SATURN724 diffractometer
Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.832, T max = 1.000
5606 measured reflections
2849 independent reflections
2578 reflections with I > 2σ(I)
R int = 0.026
Refinement
R[F 2 > 2σ(F 2)] = 0.051
wR(F 2) = 0.130
S = 1.09
2849 reflections
166 parameters
1 restraint
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.24 e Å−3
Δρmin = −0.21 e Å−3
Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810038390/hb5648sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038390/hb5648Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
Cg1 is the centroid of the C3–C8 ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1—H1o⋯N1i | 0.85 (2) | 1.84 (2) | 2.689 (2) | 176 (2) |
| C8—H8⋯O2ii | 0.95 | 2.47 | 3.398 (2) | 166 |
| C10—H10⋯O2iii | 0.95 | 2.57 | 3.277 (2) | 132 |
| C10—H10⋯Cg1iii | 0.95 | 2.89 | 3.627 (2) | 135 |
Symmetry codes: (i)
; (ii)
; (iii)
.
supplementary crystallographic information
Comment
As a continuation of studies into the phenomenon of co-crystallization of the isomeric n-pyridinealdazines (Broker et al., 2008; Arman et al., 2010a; Arman et al., 2010b), the co-crystallization of 2-phenylacetic acid and 3-pyridinealdazine was investigated. This lead to the isolation of the title 2/1 co-crystal, (I).
The asymmetric unit in (I) comprises a molecule of 2-phenylacetic acid, Fig. 1, and half a molecule of 3-pyridinealdazine, with the latter disposed about a centre of inversion, Fig. 2. The constituents of (I) are connected by O—H···N hydrogen bonds, Table 1, to generate a centrosymmetric three component aggregate, Fig. 3. The 2-phenylacetic acid molecule is non-planar as seen in the value of the C1—C2—C3—C4 torsion angle of 62.24 (17) °. By contrast, the 4-pyridinealdazine molecule is planar with the r.m.s. deviation of the 16 non-hydrogen atoms from their least-squares plane being 0.027 Å. Hence, the three component aggregate has the shape of a flattened extended chair. The structure of co-crystal (I) resembles closely that with 4-pyridinealdazine (Arman et al., 2010b) but the structures are not isomorphous.
In the crystal packing, the three component aggregates pack into layers parallel to (022) being connected by C—H···O and C—H···π contacts, Fig. 4 and Table 1.
Experimental
Golden prisms of (I) were isolated from the 2:1 co-crystallization of 2-phenylacetic acid (Sigma Aldrich) and 3-[(1E)-[(E)-2-(pyridin-3-ylmethylidene)hydrazin-1-ylidene]methyl]pyridine (Sigma Aldrich) in tetrahydrofuran, m. pt. 370–373 K.
IR assignment (cm-1): 2923 ν(C—H); 2444 ν(O—H); 1704 ν(C=O); 1628 ν(C=N); 1498, 1455, 1410 ν(C–C aromatic); 1346, 1307 ν(C—N); 819, 746 δ(C—H).
Refinement
C-bound H-atoms were placed in calculated positions (C–H 0.95–0.99 Å) and were included in the refinement in the riding model approximation with Uiso(H) set to 1.2Ueq(C). The O-bound H-atom was located in a difference Fourier map and was refined with a distance restraint of O–H 0.84±0.01 Å, and with Uiso(H) = 1.5Ueq(O).
Figures
Fig. 1.
Molecular structure of 2-phenylacetic acid found in co-crystal (I) showing displacement ellipsoids at the 50% probability level
Fig. 2.
Molecular structure of 3-pyridinealdazine found in co-crystal (I) showing displacement ellipsoids at the 50% probability level. The molecule is disposed about a centre of inversion with i = 1 - x, 1 - y, -z.
Fig. 3.
The three component aggregate in (I) highlighting the extended chair conformation. The O—H···N hydrogen bonds are shown as orange dashed lines.
Fig. 4.
A view in projection down the a axis highlighting the stacking of layers in co-crystal (I) mediated by O—H···N, C—H···O and C—H···π interactions shown as orange, blue and purple dashed lines, respectively.
Crystal data
| C12H10N4·2C8H8O2 | Z = 1 |
| Mr = 482.53 | F(000) = 254 |
| Triclinic, P1 | Dx = 1.280 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 5.511 (2) Å | Cell parameters from 2727 reflections |
| b = 9.536 (4) Å | θ = 2.6–40.1° |
| c = 12.434 (6) Å | µ = 0.09 mm−1 |
| α = 80.30 (2)° | T = 98 K |
| β = 88.45 (3)° | Prism, gold |
| γ = 76.46 (2)° | 0.52 × 0.32 × 0.10 mm |
| V = 626.1 (5) Å3 |
Data collection
| Rigaku AFC12K/SATURN724 diffractometer | 2849 independent reflections |
| Radiation source: fine-focus sealed tube | 2578 reflections with I > 2σ(I) |
| graphite | Rint = 0.026 |
| ω scans | θmax = 27.5°, θmin = 2.6° |
| Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −6→7 |
| Tmin = 0.832, Tmax = 1.000 | k = −11→12 |
| 5606 measured reflections | l = −16→16 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.130 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.09 | w = 1/[σ2(Fo2) + (0.0606P)2 + 0.17P] where P = (Fo2 + 2Fc2)/3 |
| 2849 reflections | (Δ/σ)max = 0.001 |
| 166 parameters | Δρmax = 0.24 e Å−3 |
| 1 restraint | Δρmin = −0.21 e Å−3 |
Special details
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.4813 (2) | 0.37678 (11) | 0.41019 (8) | 0.0306 (3) | |
| H1o | 0.616 (2) | 0.346 (2) | 0.3774 (15) | 0.046* | |
| O2 | 0.65187 (19) | 0.18266 (12) | 0.53456 (8) | 0.0327 (3) | |
| C1 | 0.4823 (3) | 0.28746 (15) | 0.50429 (11) | 0.0244 (3) | |
| C2 | 0.2466 (2) | 0.33170 (15) | 0.56825 (11) | 0.0260 (3) | |
| H2A | 0.2104 | 0.4387 | 0.5669 | 0.031* | |
| H2B | 0.1059 | 0.3105 | 0.5311 | 0.031* | |
| C3 | 0.2583 (2) | 0.25628 (14) | 0.68565 (11) | 0.0233 (3) | |
| C4 | 0.4322 (3) | 0.27578 (15) | 0.75870 (11) | 0.0260 (3) | |
| H4 | 0.5476 | 0.3337 | 0.7336 | 0.031* | |
| C5 | 0.4367 (3) | 0.21091 (16) | 0.86760 (12) | 0.0301 (3) | |
| H5 | 0.5550 | 0.2247 | 0.9166 | 0.036* | |
| C6 | 0.2690 (3) | 0.12602 (18) | 0.90514 (12) | 0.0339 (3) | |
| H6 | 0.2706 | 0.0829 | 0.9799 | 0.041* | |
| C7 | 0.0988 (3) | 0.10450 (18) | 0.83273 (13) | 0.0347 (4) | |
| H7 | −0.0142 | 0.0450 | 0.8577 | 0.042* | |
| C8 | 0.0934 (2) | 0.16981 (16) | 0.72377 (12) | 0.0284 (3) | |
| H8 | −0.0244 | 0.1551 | 0.6749 | 0.034* | |
| N1 | −0.0907 (2) | 0.29342 (13) | 0.30452 (10) | 0.0282 (3) | |
| N2 | 0.4880 (2) | 0.43938 (12) | 0.03906 (9) | 0.0258 (3) | |
| C9 | 0.0632 (3) | 0.16205 (16) | 0.33502 (12) | 0.0296 (3) | |
| H9 | 0.0136 | 0.0960 | 0.3926 | 0.035* | |
| C10 | 0.2924 (3) | 0.11778 (16) | 0.28634 (12) | 0.0305 (3) | |
| H10 | 0.3954 | 0.0231 | 0.3097 | 0.037* | |
| C11 | 0.3679 (3) | 0.21366 (15) | 0.20351 (12) | 0.0276 (3) | |
| H11 | 0.5233 | 0.1859 | 0.1687 | 0.033* | |
| C12 | 0.2118 (3) | 0.35235 (15) | 0.17169 (11) | 0.0241 (3) | |
| C13 | −0.0167 (3) | 0.38574 (15) | 0.22392 (11) | 0.0266 (3) | |
| H13 | −0.1254 | 0.4788 | 0.2011 | 0.032* | |
| C14 | 0.2776 (3) | 0.46341 (15) | 0.08762 (11) | 0.0253 (3) | |
| H14 | 0.1624 | 0.5551 | 0.0685 | 0.030* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0334 (6) | 0.0296 (5) | 0.0252 (5) | −0.0036 (4) | 0.0036 (4) | −0.0007 (4) |
| O2 | 0.0301 (5) | 0.0331 (6) | 0.0281 (5) | 0.0021 (4) | 0.0024 (4) | 0.0004 (4) |
| C1 | 0.0267 (6) | 0.0245 (6) | 0.0224 (6) | −0.0067 (5) | −0.0020 (5) | −0.0038 (5) |
| C2 | 0.0231 (6) | 0.0258 (7) | 0.0265 (7) | −0.0022 (5) | −0.0011 (5) | −0.0019 (5) |
| C3 | 0.0214 (6) | 0.0223 (6) | 0.0242 (7) | 0.0001 (5) | 0.0008 (5) | −0.0054 (5) |
| C4 | 0.0254 (6) | 0.0227 (6) | 0.0293 (7) | −0.0025 (5) | −0.0006 (5) | −0.0062 (5) |
| C5 | 0.0280 (7) | 0.0319 (7) | 0.0281 (7) | 0.0025 (6) | −0.0030 (5) | −0.0114 (6) |
| C6 | 0.0312 (7) | 0.0391 (8) | 0.0242 (7) | 0.0028 (6) | 0.0036 (5) | −0.0013 (6) |
| C7 | 0.0255 (7) | 0.0376 (8) | 0.0366 (8) | −0.0053 (6) | 0.0057 (6) | 0.0019 (6) |
| C8 | 0.0212 (6) | 0.0315 (7) | 0.0314 (7) | −0.0044 (5) | −0.0010 (5) | −0.0043 (6) |
| N1 | 0.0316 (6) | 0.0279 (6) | 0.0253 (6) | −0.0074 (5) | 0.0043 (5) | −0.0051 (5) |
| N2 | 0.0309 (6) | 0.0236 (6) | 0.0229 (6) | −0.0070 (5) | 0.0021 (4) | −0.0030 (5) |
| C9 | 0.0374 (8) | 0.0241 (7) | 0.0276 (7) | −0.0091 (6) | 0.0017 (6) | −0.0029 (5) |
| C10 | 0.0354 (8) | 0.0224 (7) | 0.0318 (7) | −0.0037 (6) | 0.0017 (6) | −0.0039 (6) |
| C11 | 0.0281 (7) | 0.0253 (7) | 0.0290 (7) | −0.0039 (5) | 0.0024 (5) | −0.0070 (5) |
| C12 | 0.0275 (7) | 0.0227 (6) | 0.0224 (6) | −0.0056 (5) | 0.0006 (5) | −0.0052 (5) |
| C13 | 0.0290 (7) | 0.0242 (7) | 0.0250 (7) | −0.0030 (5) | 0.0012 (5) | −0.0042 (5) |
| C14 | 0.0280 (7) | 0.0229 (6) | 0.0244 (6) | −0.0042 (5) | −0.0005 (5) | −0.0045 (5) |
Geometric parameters (Å, °)
| O1—C1 | 1.3254 (17) | C7—H7 | 0.9500 |
| O1—H1o | 0.853 (9) | C8—H8 | 0.9500 |
| O2—C1 | 1.2120 (17) | N1—C9 | 1.3389 (19) |
| C1—C2 | 1.516 (2) | N1—C13 | 1.3397 (18) |
| C2—C3 | 1.5105 (19) | N2—C14 | 1.2832 (19) |
| C2—H2A | 0.9900 | N2—N2i | 1.408 (2) |
| C2—H2B | 0.9900 | C9—C10 | 1.391 (2) |
| C3—C8 | 1.388 (2) | C9—H9 | 0.9500 |
| C3—C4 | 1.4019 (19) | C10—C11 | 1.381 (2) |
| C4—C5 | 1.389 (2) | C10—H10 | 0.9500 |
| C4—H4 | 0.9500 | C11—C12 | 1.398 (2) |
| C5—C6 | 1.388 (2) | C11—H11 | 0.9500 |
| C5—H5 | 0.9500 | C12—C13 | 1.395 (2) |
| C6—C7 | 1.390 (2) | C12—C14 | 1.4602 (19) |
| C6—H6 | 0.9500 | C13—H13 | 0.9500 |
| C7—C8 | 1.390 (2) | C14—H14 | 0.9500 |
| C1—O1—H1O | 107.8 (14) | C8—C7—H7 | 119.9 |
| O2—C1—O1 | 123.54 (13) | C3—C8—C7 | 120.66 (14) |
| O2—C1—C2 | 124.48 (13) | C3—C8—H8 | 119.7 |
| O1—C1—C2 | 111.98 (12) | C7—C8—H8 | 119.7 |
| C3—C2—C1 | 114.69 (11) | C9—N1—C13 | 117.66 (13) |
| C3—C2—H2A | 108.6 | C14—N2—N2i | 111.72 (14) |
| C1—C2—H2A | 108.6 | N1—C9—C10 | 123.08 (13) |
| C3—C2—H2B | 108.6 | N1—C9—H9 | 118.5 |
| C1—C2—H2B | 108.6 | C10—C9—H9 | 118.5 |
| H2A—C2—H2B | 107.6 | C11—C10—C9 | 118.95 (13) |
| C8—C3—C4 | 118.88 (13) | C11—C10—H10 | 120.5 |
| C8—C3—C2 | 120.74 (12) | C9—C10—H10 | 120.5 |
| C4—C3—C2 | 120.37 (13) | C10—C11—C12 | 118.88 (13) |
| C5—C4—C3 | 120.36 (14) | C10—C11—H11 | 120.6 |
| C5—C4—H4 | 119.8 | C12—C11—H11 | 120.6 |
| C3—C4—H4 | 119.8 | C13—C12—C11 | 117.99 (13) |
| C6—C5—C4 | 120.29 (14) | C13—C12—C14 | 118.80 (12) |
| C6—C5—H5 | 119.9 | C11—C12—C14 | 123.21 (13) |
| C4—C5—H5 | 119.9 | N1—C13—C12 | 123.42 (13) |
| C5—C6—C7 | 119.58 (14) | N1—C13—H13 | 118.3 |
| C5—C6—H6 | 120.2 | C12—C13—H13 | 118.3 |
| C7—C6—H6 | 120.2 | N2—C14—C12 | 121.22 (13) |
| C6—C7—C8 | 120.21 (15) | N2—C14—H14 | 119.4 |
| C6—C7—H7 | 119.9 | C12—C14—H14 | 119.4 |
| O2—C1—C2—C3 | 13.2 (2) | C13—N1—C9—C10 | −0.6 (2) |
| O1—C1—C2—C3 | −167.21 (12) | N1—C9—C10—C11 | 0.8 (2) |
| C1—C2—C3—C8 | −119.47 (14) | C9—C10—C11—C12 | 0.3 (2) |
| C1—C2—C3—C4 | 62.24 (17) | C10—C11—C12—C13 | −1.5 (2) |
| C8—C3—C4—C5 | −0.8 (2) | C10—C11—C12—C14 | 177.93 (13) |
| C2—C3—C4—C5 | 177.55 (12) | C9—N1—C13—C12 | −0.7 (2) |
| C3—C4—C5—C6 | 0.0 (2) | C11—C12—C13—N1 | 1.8 (2) |
| C4—C5—C6—C7 | 0.9 (2) | C14—C12—C13—N1 | −177.69 (13) |
| C5—C6—C7—C8 | −1.2 (2) | N2i—N2—C14—C12 | 179.76 (13) |
| C4—C3—C8—C7 | 0.5 (2) | C13—C12—C14—N2 | 178.28 (13) |
| C2—C3—C8—C7 | −177.80 (13) | C11—C12—C14—N2 | −1.1 (2) |
| C6—C7—C8—C3 | 0.5 (2) |
Symmetry codes: (i) −x+1, −y+1, −z.
Hydrogen-bond geometry (Å, °)
| Cg1 is the centroid of the C3–C8 ring. |
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1—H1o···N1ii | 0.85 (2) | 1.84 (2) | 2.689 (2) | 176 (2) |
| C8—H8···O2iii | 0.95 | 2.47 | 3.398 (2) | 166 |
| C10—H10···O2iv | 0.95 | 2.57 | 3.277 (2) | 132 |
| C10—H10···Cg1iv | 0.95 | 2.89 | 3.627 (2) | 135 |
Symmetry codes: (ii) x+1, y, z; (iii) x−1, y, z; (iv) −x+1, −y, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5648).
References
- Arman, H. D., Kaulgud, T. & Tiekink, E. R. T. (2010a). Acta Cryst. E66, o2356. [DOI] [PMC free article] [PubMed]
- Arman, H. D., Kaulgud, T. & Tiekink, E. R. T. (2010b). Acta Cryst. E66, o2629. [DOI] [PMC free article] [PubMed]
- Brandenburg, K. (2006). DIAMOND Crystal Impact GbR, Bonn, Germany.
- Broker, G. A., Bettens, R. P. A. & Tiekink, E. R. T. (2008). CrystEngComm, 10, 879–887.
- Farrugia, L. J. (1997). J. Appl. Cryst.30, 565.
- Higashi, T. (1995). ABSCOR Rigaku Corporation, Tokyo, Japan.
- Molecular Structure Corporation & Rigaku (2005). CrystalClear MSC, The Woodlands, Texas, USA, and Rigaku Corporation, Tokyo, Japan.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Westrip, S. P. (2010). J. Appl. Cryst.43, 920–925.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810038390/hb5648sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038390/hb5648Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report




