Abstract
The asymmetric unit of the title compound, C4H12N2 2+·2C5H3N2O4 −·4H2O, comprises one-half of a piperazine-1,4-diium cation, which lies on an inversion centre, a 2-carboxy-1H-pyrazole-4-carboxylate anion and two water molecules. An extensive network of intermolecular O—H⋯O, N—H⋯O, N—H⋯N and C—H⋯O hydrogen bonds between the cations, anions and water molecules leads to a three-dimensional supramolecular framework.
Related literature
For 3,5-pyrazoledicarboxylic acid, see: King et al. (2003 ▶); Pan et al. (2001 ▶). For reference structural data, see: Li & Su (2007 ▶); Reviriego et al. (2006 ▶).
Experimental
Crystal data
C4H12N2·2C5H3N2O4·4H2O
M r = 470.41
Monoclinic,
a = 8.3363 (13) Å
b = 16.246 (3) Å
c = 7.3930 (11) Å
β = 90.812 (3)°
V = 1001.2 (3) Å3
Z = 2
Mo Kα radiation
μ = 0.14 mm−1
T = 291 K
0.15 × 0.14 × 0.12 mm
Data collection
Bruker SMART APEX CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.980, T max = 0.984
5265 measured reflections
1946 independent reflections
1524 reflections with I > 2σ(I)
R int = 0.051
Refinement
R[F 2 > 2σ(F 2)] = 0.059
wR(F 2) = 0.147
S = 1.10
1946 reflections
169 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.41 e Å−3
Δρmin = −0.23 e Å−3
Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681003655X/om2361sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053681003655X/om2361Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1⋯O5i | 0.84 (3) | 1.93 (3) | 2.746 (3) | 167 (3) |
| O2—H2⋯O4ii | 0.87 (3) | 1.65 (3) | 2.520 (2) | 175 (3) |
| N3—H3A⋯O4 | 0.88 (3) | 2.36 (3) | 2.918 (3) | 121 (2) |
| N3—H3A⋯N2 | 0.88 (3) | 2.01 (3) | 2.865 (3) | 162 (3) |
| N3—H3B⋯O3iii | 0.88 (3) | 2.20 (3) | 2.999 (3) | 150 (3) |
| O5—H5B⋯O6 | 0.85 (4) | 2.00 (4) | 2.831 (3) | 166 (3) |
| O5—H5A⋯O6iv | 0.92 (4) | 1.96 (4) | 2.833 (3) | 157 (3) |
| O6—H6C⋯O3v | 0.93 (3) | 1.85 (3) | 2.779 (3) | 173 (3) |
| O6—H6D⋯O3vi | 0.76 (3) | 2.14 (3) | 2.858 (3) | 158 (4) |
| C6—H6B⋯O5vii | 0.97 | 2.53 | 3.348 (4) | 142 |
| C7—H7A⋯O1viii | 0.97 | 2.53 | 3.091 (3) | 117 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
; (v)
; (vi)
; (vii)
; (viii)
.
Acknowledgments
This research was supported financially by Nanjing University of Posts and Telecommunications (grant No. NY209032).
supplementary crystallographic information
Comment
Hydrogen bonding, as the strongest and most directional intermolecular force, has been intensively investigated in organic crystalline solids. The ligand, 3,5-pyrazoledicarboxylic acid, known both as a multiple proton donor and acceptor, has six potential hydrogen-bond sites involving both the nitrogen atoms of the pyrazole ring and all of the carboxylate O atoms. and it can form mono-, di- and trianionic ligand species through deprotonation (King et al. 2003; Pan et al. 2001).
We report here the synthesis and structure of piperazine-1,4-diium bis(2-carboxy-1H-pyrazole-4-carboxylate) tetrahydrate, as shown in Fig.1, which was obtained from a solution of 3,5-pyrazoledicarboxylic acid, Cd(NO3)2.4H2O and piperazine. Bond distances and angles are normal (Li & Su, 2007; Reviriego et al. 2006). The asymmetric unit of the title compound comprises one half of the piperazine-1,4-diium cation, which lies about an inversion centre, a 2-carboxy-1H-pyrazole-4-carboxylate anion and two water molecules. In the crystal structure molecules are interlinked by hydrogen bonds (Table 1 and Fig. 2). The 2-carboxy-1H-pyrazole-4-carboxylate anoins are interconnected with each other through the O2—H2···O4iii hydrogen bonds. The 2-carboxy-1H-pyrazole-4-carboxylate anions are connected with the piperazine-1,4-diium cations through the N3—H3A···O4, N3—H3A···N2, N3—H3B···O3iv and C7—H7A···O1viii hydrogen bonds to form the three-dimensional supramolecular framework.
Experimental
A mixture of 3,5-pyrazoledicarboxylic acid (0.2 mmol, 34.8 mg), Cd(NO3)2.4H2O (0.1 mmol, 30.8 mg), piperazine (0.2 mmol, 17.2 mg) and H2O (8 ml) was sealed in a 15 ml Teflon-lined bomb and heated at 150°C for 5 days. The reaction mixture was slowly cooled to room temperature to obtain the colorless block crystals of (I) suitable for X-ray diffraction analysis.
Refinement
Hydrogen atoms bonded to the carbon atoms were placed in calculated positions and refined as riding mode, with C—H = 0.93 Å for aromatic H atom, 0.97 Å for methylene H atoms, respectively, and Uiso(H) = 1.2Ueq(C). The H atoms on the O and N atoms were located in difference Fourier map with their bond lengths freely refined and Uiso(H) = 1.2Ueq(O or N).
Figures
Fig. 1.
The molecular structure of the title compound with 30% probability displacement ellipsoids. H atoms are shown as small spheres of arbitary radii. [Symmetry code; (i) 1 - x, 1 - y, -z.]
Fig. 2.
A view of the crystal packing. Hydrogen bonds are indicated by green dashed lines.
Crystal data
| C4H12N2·2C5H3N2O4·4H2O | F(000) = 496 |
| Mr = 470.41 | Dx = 1.560 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 1373 reflections |
| a = 8.3363 (13) Å | θ = 2.7–24.0° |
| b = 16.246 (3) Å | µ = 0.14 mm−1 |
| c = 7.3930 (11) Å | T = 291 K |
| β = 90.812 (3)° | Block, white |
| V = 1001.2 (3) Å3 | 0.15 × 0.14 × 0.12 mm |
| Z = 2 |
Data collection
| Bruker SMART APEX CCD diffractometer | 1946 independent reflections |
| Radiation source: fine-focus sealed tube | 1524 reflections with I > 2σ(I) |
| graphite | Rint = 0.051 |
| phi and ω scans | θmax = 26.0°, θmin = 2.4° |
| Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −10→10 |
| Tmin = 0.980, Tmax = 0.984 | k = −13→19 |
| 5265 measured reflections | l = −8→9 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.059 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.147 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.10 | w = 1/[σ2(Fo2) + (0.0729P)2] where P = (Fo2 + 2Fc2)/3 |
| 1946 reflections | (Δ/σ)max < 0.001 |
| 169 parameters | Δρmax = 0.41 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 1.1506 (3) | 0.78226 (15) | 0.2962 (3) | 0.0267 (6) | |
| C2 | 0.9861 (3) | 0.77149 (14) | 0.2216 (3) | 0.0233 (6) | |
| C3 | 0.8727 (3) | 0.82885 (15) | 0.1741 (3) | 0.0256 (6) | |
| H3 | 0.8827 | 0.8858 | 0.1785 | 0.031* | |
| C4 | 0.7391 (3) | 0.78344 (14) | 0.1178 (3) | 0.0226 (5) | |
| C5 | 0.5785 (3) | 0.81182 (15) | 0.0528 (3) | 0.0246 (6) | |
| C6 | 0.6653 (4) | 0.51108 (17) | −0.0379 (5) | 0.0455 (8) | |
| H6A | 0.7149 | 0.4999 | 0.0790 | 0.055* | |
| H6B | 0.7496 | 0.5242 | −0.1223 | 0.055* | |
| C7 | 0.4237 (3) | 0.56416 (16) | 0.1024 (4) | 0.0380 (7) | |
| H7A | 0.3509 | 0.6107 | 0.1070 | 0.046* | |
| H7B | 0.4666 | 0.5548 | 0.2233 | 0.046* | |
| N1 | 0.9196 (2) | 0.69726 (13) | 0.1933 (3) | 0.0266 (5) | |
| H1 | 0.962 (3) | 0.6522 (18) | 0.220 (4) | 0.032* | |
| N2 | 0.7696 (2) | 0.70254 (12) | 0.1296 (3) | 0.0262 (5) | |
| N3 | 0.5556 (3) | 0.58226 (14) | −0.0224 (3) | 0.0399 (7) | |
| H3A | 0.604 (4) | 0.6268 (19) | 0.020 (4) | 0.048* | |
| H3B | 0.514 (4) | 0.5944 (18) | −0.130 (4) | 0.048* | |
| O1 | 1.2097 (2) | 0.85001 (11) | 0.3144 (3) | 0.0454 (6) | |
| O2 | 1.2193 (2) | 0.71272 (11) | 0.3390 (3) | 0.0360 (5) | |
| H2 | 1.311 (4) | 0.7215 (17) | 0.394 (4) | 0.043* | |
| O3 | 0.5431 (2) | 0.88609 (10) | 0.0779 (3) | 0.0360 (5) | |
| O4 | 0.4901 (2) | 0.75870 (11) | −0.0188 (3) | 0.0358 (5) | |
| O5 | 0.0107 (3) | 0.53912 (14) | 0.2765 (4) | 0.0528 (7) | |
| H5A | −0.077 (5) | 0.510 (2) | 0.316 (5) | 0.063* | |
| H5B | 0.093 (5) | 0.539 (2) | 0.346 (5) | 0.063* | |
| O6 | 0.2621 (2) | 0.51492 (13) | 0.5325 (3) | 0.0476 (6) | |
| H6C | 0.323 (4) | 0.472 (2) | 0.486 (5) | 0.057* | |
| H6D | 0.320 (4) | 0.549 (2) | 0.556 (5) | 0.057* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0215 (13) | 0.0285 (14) | 0.0299 (15) | 0.0002 (11) | −0.0059 (11) | 0.0006 (11) |
| C2 | 0.0199 (12) | 0.0226 (13) | 0.0272 (14) | −0.0006 (10) | −0.0039 (10) | 0.0002 (10) |
| C3 | 0.0205 (13) | 0.0193 (12) | 0.0369 (15) | −0.0020 (9) | −0.0056 (10) | −0.0016 (10) |
| C4 | 0.0189 (12) | 0.0203 (12) | 0.0286 (14) | 0.0011 (10) | −0.0045 (10) | −0.0004 (10) |
| C5 | 0.0159 (12) | 0.0228 (13) | 0.0351 (15) | −0.0025 (10) | −0.0040 (10) | 0.0030 (11) |
| C6 | 0.0399 (17) | 0.0443 (18) | 0.052 (2) | −0.0078 (14) | 0.0024 (14) | −0.0050 (15) |
| C7 | 0.0455 (17) | 0.0286 (15) | 0.0398 (17) | 0.0027 (12) | −0.0021 (14) | −0.0035 (12) |
| N1 | 0.0191 (11) | 0.0186 (11) | 0.0417 (14) | 0.0025 (9) | −0.0092 (9) | 0.0022 (9) |
| N2 | 0.0169 (10) | 0.0215 (11) | 0.0398 (13) | −0.0001 (8) | −0.0103 (9) | 0.0011 (9) |
| N3 | 0.0616 (17) | 0.0210 (12) | 0.0370 (15) | −0.0144 (11) | −0.0069 (12) | −0.0007 (10) |
| O1 | 0.0326 (11) | 0.0284 (11) | 0.0745 (16) | −0.0083 (8) | −0.0248 (10) | 0.0010 (10) |
| O2 | 0.0195 (9) | 0.0284 (10) | 0.0597 (14) | −0.0004 (8) | −0.0183 (9) | 0.0030 (9) |
| O3 | 0.0239 (10) | 0.0218 (10) | 0.0622 (14) | 0.0044 (8) | −0.0093 (9) | −0.0002 (9) |
| O4 | 0.0221 (9) | 0.0282 (10) | 0.0566 (13) | −0.0002 (8) | −0.0167 (9) | −0.0048 (9) |
| O5 | 0.0395 (12) | 0.0361 (12) | 0.0826 (19) | 0.0042 (10) | −0.0040 (12) | 0.0144 (11) |
| O6 | 0.0345 (12) | 0.0334 (12) | 0.0748 (17) | −0.0035 (9) | −0.0015 (11) | −0.0107 (11) |
Geometric parameters (Å, °)
| C1—O1 | 1.213 (3) | C6—H6B | 0.9700 |
| C1—O2 | 1.304 (3) | C7—N3 | 1.476 (4) |
| C1—C2 | 1.481 (3) | C7—C6i | 1.504 (4) |
| C2—N1 | 1.342 (3) | C7—H7A | 0.9700 |
| C2—C3 | 1.369 (3) | C7—H7B | 0.9700 |
| C3—C4 | 1.395 (3) | N1—N2 | 1.333 (3) |
| C3—H3 | 0.9300 | N1—H1 | 0.84 (3) |
| C4—N2 | 1.341 (3) | N3—H3A | 0.88 (3) |
| C4—C5 | 1.489 (3) | N3—H3B | 0.88 (3) |
| C5—O4 | 1.248 (3) | O2—H2 | 0.87 (3) |
| C5—O3 | 1.256 (3) | O5—H5A | 0.92 (4) |
| C6—N3 | 1.480 (4) | O5—H5B | 0.85 (4) |
| C6—C7i | 1.504 (4) | O6—H6C | 0.93 (3) |
| C6—H6A | 0.9700 | O6—H6D | 0.76 (3) |
| O1—C1—O2 | 125.7 (2) | H6A—C6—H6B | 108.0 |
| O1—C1—C2 | 121.4 (2) | N3—C7—C6i | 109.4 (2) |
| O2—C1—C2 | 112.9 (2) | N3—C7—H7A | 109.8 |
| N1—C2—C3 | 106.9 (2) | C6i—C7—H7A | 109.8 |
| N1—C2—C1 | 122.8 (2) | N3—C7—H7B | 109.8 |
| C3—C2—C1 | 130.3 (2) | C6i—C7—H7B | 109.8 |
| C2—C3—C4 | 105.2 (2) | H7A—C7—H7B | 108.2 |
| C2—C3—H3 | 127.4 | N2—N1—C2 | 112.3 (2) |
| C4—C3—H3 | 127.4 | N2—N1—H1 | 122.4 (18) |
| N2—C4—C3 | 110.4 (2) | C2—N1—H1 | 125.1 (19) |
| N2—C4—C5 | 119.6 (2) | N1—N2—C4 | 105.21 (19) |
| C3—C4—C5 | 130.0 (2) | C7—N3—C6 | 111.1 (2) |
| O4—C5—O3 | 126.1 (2) | C7—N3—H3A | 106 (2) |
| O4—C5—C4 | 116.5 (2) | C6—N3—H3A | 113 (2) |
| O3—C5—C4 | 117.5 (2) | C7—N3—H3B | 108 (2) |
| N3—C6—C7i | 111.0 (2) | C6—N3—H3B | 110 (2) |
| N3—C6—H6A | 109.4 | H3A—N3—H3B | 108 (3) |
| C7i—C6—H6A | 109.4 | C1—O2—H2 | 110.5 (18) |
| N3—C6—H6B | 109.4 | H5A—O5—H5B | 117 (3) |
| C7i—C6—H6B | 109.4 | H6C—O6—H6D | 107 (3) |
Symmetry codes: (i) −x+1, −y+1, −z.
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···O5ii | 0.84 (3) | 1.93 (3) | 2.746 (3) | 167 (3) |
| O2—H2···O4iii | 0.87 (3) | 1.65 (3) | 2.520 (2) | 175 (3) |
| N3—H3A···O4 | 0.88 (3) | 2.36 (3) | 2.918 (3) | 121 (2) |
| N3—H3A···N2 | 0.88 (3) | 2.01 (3) | 2.865 (3) | 162 (3) |
| N3—H3B···O3iv | 0.88 (3) | 2.20 (3) | 2.999 (3) | 150 (3) |
| O5—H5B···O6 | 0.85 (4) | 2.00 (4) | 2.831 (3) | 166 (3) |
| O5—H5A···O6v | 0.92 (4) | 1.96 (4) | 2.833 (3) | 157 (3) |
| O6—H6C···O3vi | 0.93 (3) | 1.85 (3) | 2.779 (3) | 173 (3) |
| O6—H6D···O3vii | 0.76 (3) | 2.14 (3) | 2.858 (3) | 158 (4) |
| C6—H6B···O5i | 0.97 | 2.53 | 3.348 (4) | 142 |
| C7—H7A···O1viii | 0.97 | 2.53 | 3.091 (3) | 117 |
Symmetry codes: (ii) x+1, y, z; (iii) x+1, −y+3/2, z+1/2; (iv) x, −y+3/2, z−1/2; (v) −x, −y+1, −z+1; (vi) −x+1, y−1/2, −z+1/2; (vii) x, −y+3/2, z+1/2; (i) −x+1, −y+1, −z; (viii) x−1, −y+3/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: OM2361).
References
- Brandenburg, K. (2008). DIAMOND Crystal Impact GbR, Bonn, Germany.
- Bruker (2000). SMART, SADABS and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- King, P., Clèrac, R., Anson, C. E., Coulon, C. & Powell, A. K. (2003). Inorg. Chem.42, 3492–3500. [DOI] [PubMed]
- Li, Z.-H. & Su, K.-M. (2007). Acta Cryst. E63, o4744.
- Pan, L., Ching, N., Huang, X. Y. & Li, J. (2001). Chem. Eur. J.7, 4431–4437. [DOI] [PubMed]
- Reviriego, F., Rodriguez-Franco, M. I., Navarro, P., Garcĺa-España, E., Liu-González, M., Verdejo, B. & Domènech, A. (2006). J. Am. Chem. Soc.128, 16458–16459. [DOI] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681003655X/om2361sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053681003655X/om2361Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


