Abstract
In the title compound, [Co(C3H2O4)(C14H12N2)]n, the CoII ion is in a distorted octahedral coordination being chelated by a 2,9-dimethyl-1,10-phenanthroline molecule (dmphen) and two carboxylate groups of two malonate ligands The malonate ligand acts in a bridging mode, forming coordination chains along [100]. π–π stacking interactions between dmphen ligands [interplanar distances = 3.414 (4) and 3.447 (4) Å] organize the coordination polymers into supramolecular double chains.
Related literature
For coordination polymers with dicarboxylate ligands, see: Rao et al. (2004 ▶); Zheng et al. (2004 ▶).
Experimental
Crystal data
[Co(C3H2O4)(C14H12N2)]
M r = 369.23
Triclinic,
a = 6.8767 (14) Å
b = 9.5293 (19) Å
c = 11.149 (2) Å
α = 86.83 (3)°
β = 89.53 (3)°
γ = 89.52 (3)°
V = 729.4 (2) Å3
Z = 2
Mo Kα radiation
μ = 1.20 mm−1
T = 295 K
0.33 × 0.11 × 0.07 mm
Data collection
Rigaku R-AXIS RAPID diffractometer
Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.653, T max = 0.782
7245 measured reflections
3309 independent reflections
2590 reflections with I > 2σ(I)
R int = 0.032
Refinement
R[F 2 > 2σ(F 2)] = 0.048
wR(F 2) = 0.127
S = 1.06
3309 reflections
222 parameters
H-atom parameters constrained
Δρmax = 0.58 e Å−3
Δρmin = −0.40 e Å−3
Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810038043/gk2299sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038043/gk2299Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Selected bond lengths (Å).
| Co1—O1 | 2.180 (3) |
| Co1—O2 | 2.145 (3) |
| Co1—O3i | 2.229 (3) |
| Co1—O4i | 2.126 (4) |
| Co1—N1 | 2.122 (3) |
| Co1—N2 | 2.103 (3) |
Symmetry code: (i)
.
Acknowledgments
This project was sponsored by the K. C. Wong Magna Fund in Ningbo University and the Scientific Research Fund of Ningbo University (grant No. XYL09078).
supplementary crystallographic information
Comment
Metal-phenanthroline complexes and their derivatives have attracted much attention because of their peculiar features. In turn dicarboxylate ligands play an important role in modern coordination chemistry and many complexes have been published with them as ligands (Rao et al., 2004; Zheng et al., 2004). The title complex, (I), was recently prepared and its crystal structure is reported here.
The crystal structure of the title compound consists of [Co(C14H12N2)(C3H2O4)]n chains (Fig. 1). Each Co atom is surrounded by two nitrogen atoms of one 2,9-dimethyl-1,10-phenanthroline ligand and four oxygen atoms of two bis-chelating malonate anions to complete a seriously distorted octahedral coordination (Table 1). The malonate ligands bridge the Co atoms to form neutral one-dimensional chains [Co(C14H12N2)(C3H2O4)]n along [100] with parallel orientated phen ligands at the same side. As shown in Fig. 2, through π-π stacking interactions the dmphen ligands of two adjacent coordination chains form supramolecular double chains. The interplanar distances between the neighbouring dmphen ligands are 3.414 (4) and 3.447 (4) Å.
Experimental
Addition of 2.0 ml (1 M) NaOH to an aqueous solution of CoCl2.6H2O (0.238 g, 1.00 mmol) in 10.0 ml H2O produced a pink precipitate, which was centrifugated and washed with doubly destilled water for several times until no Cl- anions were detectable. The fresh precipitate was then added to a stirred solution of malonic acid (0.104 g, 1.00 mmol) and 2,9-dimethyl-1,10-phenanthroline hydrate (0.226 g, 1 mmol) in CH3OH/H2O (1:1 30 ml). The red mixture was allowed to stand at room temperature and after several days, red plate-like crystals suitable for X-ray analysis were formed. grown by slow evaporation.
Refinement
All H atoms were placed in geometrically calculated position (C-H = 0.93-0.97 Å) and refined in a riding model approximation with Uiso(H) = 1.2 Ueq(C).
Figures
Fig. 1.
ORTEP view of the title compound. The displacement ellipsoids are drawn at the 30% probability level [symmetry code: (i) x - 1, y, z; (ii) x + 1, y, z].
Fig. 2.
A double chain formed through π–π stacking interactions between dmphen ligands.
Crystal data
| [Co(C3H2O4)(C14H12N2)] | Z = 2 |
| Mr = 369.23 | F(000) = 378 |
| Triclinic, P1 | Dx = 1.681 Mg m−3 |
| Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
| a = 6.8767 (14) Å | Cell parameters from 5667 reflections |
| b = 9.5293 (19) Å | θ = 3.5–27.5° |
| c = 11.149 (2) Å | µ = 1.20 mm−1 |
| α = 86.83 (3)° | T = 295 K |
| β = 89.53 (3)° | Plate, red |
| γ = 89.52 (3)° | 0.33 × 0.11 × 0.07 mm |
| V = 729.4 (2) Å3 |
Data collection
| Rigaku R-AXIS RAPID diffractometer | 3309 independent reflections |
| Radiation source: fine-focus sealed tube | 2590 reflections with I > 2σ(I) |
| graphite | Rint = 0.032 |
| Detector resolution: 0 pixels mm-1 | θmax = 27.5°, θmin = 3.5° |
| ω scans | h = −8→8 |
| Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | k = −12→12 |
| Tmin = 0.653, Tmax = 0.782 | l = −14→14 |
| 7245 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.127 | H-atom parameters constrained |
| S = 1.06 | w = 1/[σ2(Fo2) + (0.0568P)2 + 0.8449P] where P = (Fo2 + 2Fc2)/3 |
| 3309 reflections | (Δ/σ)max = 0.015 |
| 222 parameters | Δρmax = 0.58 e Å−3 |
| 0 restraints | Δρmin = −0.40 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Co1 | 0.23932 (7) | 0.27775 (5) | 0.73432 (4) | 0.03063 (16) | |
| N1 | 0.2539 (4) | 0.0677 (3) | 0.6805 (2) | 0.0283 (6) | |
| N2 | 0.2379 (4) | 0.1661 (3) | 0.9024 (2) | 0.0264 (5) | |
| C1 | 0.2526 (5) | 0.0223 (4) | 0.5691 (3) | 0.0346 (7) | |
| C2 | 0.2653 (5) | −0.1224 (4) | 0.5494 (4) | 0.0435 (9) | |
| H2A | 0.2659 | −0.1521 | 0.4713 | 0.052* | |
| C3 | 0.2765 (5) | −0.2181 (4) | 0.6433 (4) | 0.0439 (9) | |
| H3A | 0.2860 | −0.3133 | 0.6297 | 0.053* | |
| C4 | 0.2737 (5) | −0.1737 (3) | 0.7614 (3) | 0.0347 (7) | |
| C5 | 0.2824 (5) | −0.2671 (4) | 0.8659 (4) | 0.0437 (9) | |
| H5A | 0.2923 | −0.3633 | 0.8571 | 0.052* | |
| C6 | 0.2766 (5) | −0.2182 (4) | 0.9773 (4) | 0.0413 (9) | |
| H6A | 0.2831 | −0.2812 | 1.0439 | 0.050* | |
| C7 | 0.2604 (5) | −0.0702 (3) | 0.9941 (3) | 0.0322 (7) | |
| C8 | 0.2485 (5) | −0.0137 (4) | 1.1072 (3) | 0.0396 (8) | |
| H8A | 0.2515 | −0.0724 | 1.1766 | 0.048* | |
| C9 | 0.2326 (5) | 0.1280 (4) | 1.1146 (3) | 0.0382 (8) | |
| H9A | 0.2249 | 0.1660 | 1.1896 | 0.046* | |
| C10 | 0.2276 (5) | 0.2173 (3) | 1.0107 (3) | 0.0312 (7) | |
| C11 | 0.2530 (4) | 0.0242 (3) | 0.8937 (3) | 0.0266 (6) | |
| C12 | 0.2620 (4) | −0.0274 (3) | 0.7747 (3) | 0.0281 (7) | |
| C13 | 0.2325 (6) | 0.1281 (5) | 0.4669 (3) | 0.0461 (9) | |
| H13A | 0.1190 | 0.1850 | 0.4789 | 0.069* | |
| H13B | 0.2202 | 0.0809 | 0.3935 | 0.069* | |
| H13C | 0.3455 | 0.1867 | 0.4623 | 0.069* | |
| C14 | 0.2121 (6) | 0.3725 (4) | 1.0190 (3) | 0.0424 (9) | |
| H14A | 0.3391 | 0.4104 | 1.0304 | 0.064* | |
| H14B | 0.1298 | 0.3933 | 1.0858 | 0.064* | |
| H14C | 0.1574 | 0.4137 | 0.9462 | 0.064* | |
| O1 | 0.4924 (4) | 0.3945 (4) | 0.7882 (3) | 0.0622 (9) | |
| O2 | 0.4560 (5) | 0.3466 (4) | 0.6052 (3) | 0.0675 (9) | |
| O3 | 0.9214 (4) | 0.2696 (3) | 0.6983 (3) | 0.0646 (9) | |
| O4 | 1.0687 (5) | 0.4640 (4) | 0.7095 (5) | 0.0950 (15) | |
| C15 | 0.5528 (5) | 0.4017 (3) | 0.6837 (3) | 0.0331 (7) | |
| C16 | 0.7380 (5) | 0.4791 (4) | 0.6502 (3) | 0.0360 (8) | |
| H16A | 0.7421 | 0.4975 | 0.5638 | 0.043* | |
| H16C | 0.7359 | 0.5691 | 0.6869 | 0.043* | |
| C17 | 0.9200 (5) | 0.3999 (4) | 0.6886 (3) | 0.0343 (7) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Co1 | 0.0319 (2) | 0.0274 (2) | 0.0321 (3) | −0.00231 (17) | −0.00176 (17) | 0.00297 (17) |
| N1 | 0.0266 (13) | 0.0290 (13) | 0.0292 (14) | −0.0007 (11) | 0.0004 (11) | −0.0026 (11) |
| N2 | 0.0265 (13) | 0.0237 (12) | 0.0289 (14) | −0.0015 (10) | −0.0022 (10) | −0.0008 (10) |
| C1 | 0.0240 (15) | 0.045 (2) | 0.0350 (18) | −0.0042 (14) | 0.0005 (13) | −0.0083 (15) |
| C2 | 0.040 (2) | 0.052 (2) | 0.040 (2) | −0.0062 (17) | 0.0002 (16) | −0.0192 (18) |
| C3 | 0.0363 (19) | 0.0362 (19) | 0.061 (3) | −0.0042 (16) | −0.0004 (17) | −0.0184 (18) |
| C4 | 0.0284 (16) | 0.0271 (16) | 0.049 (2) | −0.0028 (13) | 0.0011 (15) | −0.0025 (15) |
| C5 | 0.0397 (19) | 0.0227 (16) | 0.068 (3) | −0.0011 (15) | −0.0021 (18) | 0.0024 (16) |
| C6 | 0.0390 (19) | 0.0301 (18) | 0.053 (2) | −0.0029 (15) | −0.0025 (17) | 0.0164 (16) |
| C7 | 0.0245 (15) | 0.0318 (17) | 0.0393 (19) | −0.0044 (13) | −0.0043 (13) | 0.0089 (14) |
| C8 | 0.0374 (18) | 0.047 (2) | 0.0331 (19) | −0.0060 (16) | −0.0018 (15) | 0.0127 (16) |
| C9 | 0.0413 (19) | 0.050 (2) | 0.0238 (17) | −0.0036 (16) | −0.0022 (14) | −0.0013 (15) |
| C10 | 0.0293 (16) | 0.0340 (17) | 0.0303 (17) | −0.0014 (14) | −0.0010 (13) | −0.0011 (13) |
| C11 | 0.0210 (14) | 0.0272 (15) | 0.0314 (17) | −0.0034 (12) | −0.0024 (12) | 0.0022 (12) |
| C12 | 0.0223 (14) | 0.0261 (15) | 0.0360 (18) | −0.0014 (12) | 0.0002 (12) | −0.0006 (13) |
| C13 | 0.046 (2) | 0.064 (3) | 0.0282 (19) | −0.0095 (19) | −0.0032 (16) | −0.0023 (17) |
| C14 | 0.052 (2) | 0.0385 (19) | 0.037 (2) | 0.0000 (17) | 0.0006 (17) | −0.0080 (16) |
| O1 | 0.0481 (16) | 0.097 (3) | 0.0412 (17) | −0.0195 (17) | 0.0000 (13) | 0.0045 (16) |
| O2 | 0.063 (2) | 0.083 (2) | 0.059 (2) | −0.0335 (18) | 0.0073 (16) | −0.0249 (18) |
| O3 | 0.0481 (17) | 0.0449 (17) | 0.101 (3) | 0.0117 (14) | −0.0200 (17) | −0.0033 (17) |
| O4 | 0.0404 (17) | 0.059 (2) | 0.183 (5) | −0.0152 (16) | −0.040 (2) | 0.027 (2) |
| C15 | 0.0266 (15) | 0.0300 (16) | 0.042 (2) | 0.0048 (13) | −0.0038 (14) | 0.0032 (14) |
| C16 | 0.0349 (17) | 0.0307 (17) | 0.042 (2) | −0.0006 (14) | −0.0031 (15) | 0.0068 (14) |
| C17 | 0.0327 (17) | 0.0369 (18) | 0.0327 (18) | 0.0018 (15) | −0.0001 (14) | 0.0021 (14) |
Geometric parameters (Å, °)
| Co1—O1 | 2.180 (3) | C7—C8 | 1.400 (5) |
| Co1—O2 | 2.145 (3) | C8—C9 | 1.361 (5) |
| Co1—O3i | 2.229 (3) | C8—H8A | 0.9300 |
| Co1—O4i | 2.126 (4) | C9—C10 | 1.399 (5) |
| Co1—N1 | 2.122 (3) | C9—H9A | 0.9300 |
| Co1—N2 | 2.103 (3) | C10—C14 | 1.489 (5) |
| Co1—C15 | 2.512 (4) | C11—C12 | 1.440 (5) |
| Co1—C17i | 2.519 (3) | C13—H13A | 0.9600 |
| N1—C1 | 1.338 (4) | C13—H13B | 0.9600 |
| N1—C12 | 1.350 (4) | C13—H13C | 0.9600 |
| N2—C10 | 1.328 (4) | C14—H14A | 0.9600 |
| N2—C11 | 1.364 (4) | C14—H14B | 0.9600 |
| C1—C2 | 1.410 (5) | C14—H14C | 0.9600 |
| C1—C13 | 1.485 (5) | O1—C15 | 1.233 (4) |
| C2—C3 | 1.352 (6) | O2—C15 | 1.246 (5) |
| C2—H2A | 0.9300 | O3—C17 | 1.240 (4) |
| C3—C4 | 1.405 (5) | O3—Co1ii | 2.229 (3) |
| C3—H3A | 0.9300 | O4—C17 | 1.226 (5) |
| C4—C12 | 1.411 (4) | O4—Co1ii | 2.126 (4) |
| C4—C5 | 1.428 (5) | C15—C16 | 1.511 (5) |
| C5—C6 | 1.350 (6) | C16—C17 | 1.509 (5) |
| C5—H5A | 0.9300 | C16—H16A | 0.9700 |
| C6—C7 | 1.436 (5) | C16—H16C | 0.9700 |
| C6—H6A | 0.9300 | C17—Co1ii | 2.519 (3) |
| C7—C11 | 1.398 (4) | ||
| N2—Co1—N1 | 79.24 (10) | C9—C8—H8A | 120.3 |
| N2—Co1—O4i | 119.53 (16) | C7—C8—H8A | 120.3 |
| N1—Co1—O4i | 140.97 (13) | C8—C9—C10 | 120.8 (3) |
| N2—Co1—O2 | 136.06 (13) | C8—C9—H9A | 119.6 |
| N1—Co1—O2 | 92.45 (12) | C10—C9—H9A | 119.6 |
| O4i—Co1—O2 | 93.90 (16) | N2—C10—C9 | 120.9 (3) |
| N2—Co1—O1 | 89.80 (11) | N2—C10—C14 | 118.4 (3) |
| N1—Co1—O1 | 123.50 (12) | C9—C10—C14 | 120.7 (3) |
| O4i—Co1—O1 | 92.30 (13) | N2—C11—C7 | 122.8 (3) |
| O2—Co1—O1 | 59.10 (12) | N2—C11—C12 | 117.3 (3) |
| N2—Co1—O3i | 97.95 (12) | C7—C11—C12 | 119.9 (3) |
| N1—Co1—O3i | 86.71 (11) | N1—C12—C4 | 123.0 (3) |
| O4i—Co1—O3i | 58.47 (12) | N1—C12—C11 | 117.8 (3) |
| O2—Co1—O3i | 124.82 (14) | C4—C12—C11 | 119.2 (3) |
| O1—Co1—O3i | 149.76 (13) | C1—C13—H13A | 109.5 |
| C1—N1—C12 | 119.0 (3) | C1—C13—H13B | 109.5 |
| C1—N1—Co1 | 128.3 (2) | H13A—C13—H13B | 109.5 |
| C12—N1—Co1 | 112.6 (2) | C1—C13—H13C | 109.5 |
| C10—N2—C11 | 118.9 (3) | H13A—C13—H13C | 109.5 |
| C10—N2—Co1 | 128.1 (2) | H13B—C13—H13C | 109.5 |
| C11—N2—Co1 | 113.0 (2) | C10—C14—H14A | 109.5 |
| N1—C1—C2 | 120.9 (3) | C10—C14—H14B | 109.5 |
| N1—C1—C13 | 118.2 (3) | H14A—C14—H14B | 109.5 |
| C2—C1—C13 | 120.9 (3) | C10—C14—H14C | 109.5 |
| C3—C2—C1 | 120.4 (3) | H14A—C14—H14C | 109.5 |
| C3—C2—H2A | 119.8 | H14B—C14—H14C | 109.5 |
| C1—C2—H2A | 119.8 | C15—O1—Co1 | 90.4 (2) |
| C2—C3—C4 | 120.0 (3) | C15—O2—Co1 | 91.7 (2) |
| C2—C3—H3A | 120.0 | O1—C15—O2 | 118.8 (3) |
| C4—C3—H3A | 120.0 | O1—C15—C16 | 120.9 (3) |
| C3—C4—C12 | 116.7 (3) | O2—C15—C16 | 120.3 (3) |
| C3—C4—C5 | 123.9 (3) | O1—C15—Co1 | 60.2 (2) |
| C12—C4—C5 | 119.4 (3) | O2—C15—Co1 | 58.6 (2) |
| C6—C5—C4 | 121.2 (3) | C16—C15—Co1 | 178.2 (2) |
| C6—C5—H5A | 119.4 | C17—C16—C15 | 113.5 (3) |
| C4—C5—H5A | 119.4 | C17—C16—H16A | 108.9 |
| C5—C6—C7 | 120.8 (3) | C15—C16—H16A | 108.9 |
| C5—C6—H6A | 119.6 | C17—C16—H16C | 108.9 |
| C7—C6—H6A | 119.6 | C15—C16—H16C | 108.9 |
| C11—C7—C8 | 117.2 (3) | H16A—C16—H16C | 107.7 |
| C11—C7—C6 | 119.4 (3) | O4—C17—O3 | 119.4 (4) |
| C8—C7—C6 | 123.4 (3) | O4—C17—C16 | 120.1 (3) |
| C9—C8—C7 | 119.4 (3) | O3—C17—C16 | 120.5 (3) |
Symmetry codes: (i) x−1, y, z; (ii) x+1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: GK2299).
References
- Higashi, T. (1995). ABSCOR Rigaku Corporation, Tokyo, Japan.
- Rao, C. N. R., Natarajan, S. & Vaidhyanathan, R. (2004). Angew. Chem. Int. Ed.43, 1466–1496. [DOI] [PubMed]
- Rigaku (1998). RAPID-AUTO Rigaku Corporation, Tokyo, Japan.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Zheng, Y.-Q., Lin, J.-L. & Kong, Z.-P. (2004). Inorg. Chem.43, 2590–2596. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810038043/gk2299sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038043/gk2299Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


