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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Sep 30;66(Pt 10):m1327. doi: 10.1107/S1600536810038043

catena-Poly[[(2,9-dimethyl-1,10-phenanthroline-κ2 N,N′)cobalt(II)]-μ-malonato-κ4 O 1,O 1′:O 3,O 3′]

Ling-Feng Qiu a, Bai-Lu Zhou a, Wei Xu a,*
PMCID: PMC2983174  PMID: 21587459

Abstract

In the title compound, [Co(C3H2O4)(C14H12N2)]n, the CoII ion is in a distorted octa­hedral coordination being chelated by a 2,9-dimethyl-1,10-phenanthroline mol­ecule (dmphen) and two carboxyl­ate groups of two malonate ligands The malonate ligand acts in a bridging mode, forming coordination chains along [100]. π–π stacking inter­actions between dmphen ligands [inter­planar distances = 3.414 (4) and 3.447 (4) Å] organize the coordination polymers into supra­molecular double chains.

Related literature

For coordination polymers with dicarboxyl­ate ligands, see: Rao et al. (2004); Zheng et al. (2004).graphic file with name e-66-m1327-scheme1.jpg

Experimental

Crystal data

  • [Co(C3H2O4)(C14H12N2)]

  • M r = 369.23

  • Triclinic, Inline graphic

  • a = 6.8767 (14) Å

  • b = 9.5293 (19) Å

  • c = 11.149 (2) Å

  • α = 86.83 (3)°

  • β = 89.53 (3)°

  • γ = 89.52 (3)°

  • V = 729.4 (2) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 1.20 mm−1

  • T = 295 K

  • 0.33 × 0.11 × 0.07 mm

Data collection

  • Rigaku R-AXIS RAPID diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.653, T max = 0.782

  • 7245 measured reflections

  • 3309 independent reflections

  • 2590 reflections with I > 2σ(I)

  • R int = 0.032

Refinement

  • R[F 2 > 2σ(F 2)] = 0.048

  • wR(F 2) = 0.127

  • S = 1.06

  • 3309 reflections

  • 222 parameters

  • H-atom parameters constrained

  • Δρmax = 0.58 e Å−3

  • Δρmin = −0.40 e Å−3

Data collection: RAPID-AUTO (Rigaku, 1998); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810038043/gk2299sup1.cif

e-66-m1327-sup1.cif (17.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038043/gk2299Isup2.hkl

e-66-m1327-Isup2.hkl (162.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Co1—O1 2.180 (3)
Co1—O2 2.145 (3)
Co1—O3i 2.229 (3)
Co1—O4i 2.126 (4)
Co1—N1 2.122 (3)
Co1—N2 2.103 (3)

Symmetry code: (i) Inline graphic.

Acknowledgments

This project was sponsored by the K. C. Wong Magna Fund in Ningbo University and the Scientific Research Fund of Ningbo University (grant No. XYL09078).

supplementary crystallographic information

Comment

Metal-phenanthroline complexes and their derivatives have attracted much attention because of their peculiar features. In turn dicarboxylate ligands play an important role in modern coordination chemistry and many complexes have been published with them as ligands (Rao et al., 2004; Zheng et al., 2004). The title complex, (I), was recently prepared and its crystal structure is reported here.

The crystal structure of the title compound consists of [Co(C14H12N2)(C3H2O4)]n chains (Fig. 1). Each Co atom is surrounded by two nitrogen atoms of one 2,9-dimethyl-1,10-phenanthroline ligand and four oxygen atoms of two bis-chelating malonate anions to complete a seriously distorted octahedral coordination (Table 1). The malonate ligands bridge the Co atoms to form neutral one-dimensional chains [Co(C14H12N2)(C3H2O4)]n along [100] with parallel orientated phen ligands at the same side. As shown in Fig. 2, through π-π stacking interactions the dmphen ligands of two adjacent coordination chains form supramolecular double chains. The interplanar distances between the neighbouring dmphen ligands are 3.414 (4) and 3.447 (4) Å.

Experimental

Addition of 2.0 ml (1 M) NaOH to an aqueous solution of CoCl2.6H2O (0.238 g, 1.00 mmol) in 10.0 ml H2O produced a pink precipitate, which was centrifugated and washed with doubly destilled water for several times until no Cl- anions were detectable. The fresh precipitate was then added to a stirred solution of malonic acid (0.104 g, 1.00 mmol) and 2,9-dimethyl-1,10-phenanthroline hydrate (0.226 g, 1 mmol) in CH3OH/H2O (1:1 30 ml). The red mixture was allowed to stand at room temperature and after several days, red plate-like crystals suitable for X-ray analysis were formed. grown by slow evaporation.

Refinement

All H atoms were placed in geometrically calculated position (C-H = 0.93-0.97 Å) and refined in a riding model approximation with Uiso(H) = 1.2 Ueq(C).

Figures

Fig. 1.

Fig. 1.

ORTEP view of the title compound. The displacement ellipsoids are drawn at the 30% probability level [symmetry code: (i) x - 1, y, z; (ii) x + 1, y, z].

Fig. 2.

Fig. 2.

A double chain formed through π–π stacking interactions between dmphen ligands.

Crystal data

[Co(C3H2O4)(C14H12N2)] Z = 2
Mr = 369.23 F(000) = 378
Triclinic, P1 Dx = 1.681 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 6.8767 (14) Å Cell parameters from 5667 reflections
b = 9.5293 (19) Å θ = 3.5–27.5°
c = 11.149 (2) Å µ = 1.20 mm1
α = 86.83 (3)° T = 295 K
β = 89.53 (3)° Plate, red
γ = 89.52 (3)° 0.33 × 0.11 × 0.07 mm
V = 729.4 (2) Å3

Data collection

Rigaku R-AXIS RAPID diffractometer 3309 independent reflections
Radiation source: fine-focus sealed tube 2590 reflections with I > 2σ(I)
graphite Rint = 0.032
Detector resolution: 0 pixels mm-1 θmax = 27.5°, θmin = 3.5°
ω scans h = −8→8
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) k = −12→12
Tmin = 0.653, Tmax = 0.782 l = −14→14
7245 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0568P)2 + 0.8449P] where P = (Fo2 + 2Fc2)/3
3309 reflections (Δ/σ)max = 0.015
222 parameters Δρmax = 0.58 e Å3
0 restraints Δρmin = −0.40 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Co1 0.23932 (7) 0.27775 (5) 0.73432 (4) 0.03063 (16)
N1 0.2539 (4) 0.0677 (3) 0.6805 (2) 0.0283 (6)
N2 0.2379 (4) 0.1661 (3) 0.9024 (2) 0.0264 (5)
C1 0.2526 (5) 0.0223 (4) 0.5691 (3) 0.0346 (7)
C2 0.2653 (5) −0.1224 (4) 0.5494 (4) 0.0435 (9)
H2A 0.2659 −0.1521 0.4713 0.052*
C3 0.2765 (5) −0.2181 (4) 0.6433 (4) 0.0439 (9)
H3A 0.2860 −0.3133 0.6297 0.053*
C4 0.2737 (5) −0.1737 (3) 0.7614 (3) 0.0347 (7)
C5 0.2824 (5) −0.2671 (4) 0.8659 (4) 0.0437 (9)
H5A 0.2923 −0.3633 0.8571 0.052*
C6 0.2766 (5) −0.2182 (4) 0.9773 (4) 0.0413 (9)
H6A 0.2831 −0.2812 1.0439 0.050*
C7 0.2604 (5) −0.0702 (3) 0.9941 (3) 0.0322 (7)
C8 0.2485 (5) −0.0137 (4) 1.1072 (3) 0.0396 (8)
H8A 0.2515 −0.0724 1.1766 0.048*
C9 0.2326 (5) 0.1280 (4) 1.1146 (3) 0.0382 (8)
H9A 0.2249 0.1660 1.1896 0.046*
C10 0.2276 (5) 0.2173 (3) 1.0107 (3) 0.0312 (7)
C11 0.2530 (4) 0.0242 (3) 0.8937 (3) 0.0266 (6)
C12 0.2620 (4) −0.0274 (3) 0.7747 (3) 0.0281 (7)
C13 0.2325 (6) 0.1281 (5) 0.4669 (3) 0.0461 (9)
H13A 0.1190 0.1850 0.4789 0.069*
H13B 0.2202 0.0809 0.3935 0.069*
H13C 0.3455 0.1867 0.4623 0.069*
C14 0.2121 (6) 0.3725 (4) 1.0190 (3) 0.0424 (9)
H14A 0.3391 0.4104 1.0304 0.064*
H14B 0.1298 0.3933 1.0858 0.064*
H14C 0.1574 0.4137 0.9462 0.064*
O1 0.4924 (4) 0.3945 (4) 0.7882 (3) 0.0622 (9)
O2 0.4560 (5) 0.3466 (4) 0.6052 (3) 0.0675 (9)
O3 0.9214 (4) 0.2696 (3) 0.6983 (3) 0.0646 (9)
O4 1.0687 (5) 0.4640 (4) 0.7095 (5) 0.0950 (15)
C15 0.5528 (5) 0.4017 (3) 0.6837 (3) 0.0331 (7)
C16 0.7380 (5) 0.4791 (4) 0.6502 (3) 0.0360 (8)
H16A 0.7421 0.4975 0.5638 0.043*
H16C 0.7359 0.5691 0.6869 0.043*
C17 0.9200 (5) 0.3999 (4) 0.6886 (3) 0.0343 (7)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Co1 0.0319 (2) 0.0274 (2) 0.0321 (3) −0.00231 (17) −0.00176 (17) 0.00297 (17)
N1 0.0266 (13) 0.0290 (13) 0.0292 (14) −0.0007 (11) 0.0004 (11) −0.0026 (11)
N2 0.0265 (13) 0.0237 (12) 0.0289 (14) −0.0015 (10) −0.0022 (10) −0.0008 (10)
C1 0.0240 (15) 0.045 (2) 0.0350 (18) −0.0042 (14) 0.0005 (13) −0.0083 (15)
C2 0.040 (2) 0.052 (2) 0.040 (2) −0.0062 (17) 0.0002 (16) −0.0192 (18)
C3 0.0363 (19) 0.0362 (19) 0.061 (3) −0.0042 (16) −0.0004 (17) −0.0184 (18)
C4 0.0284 (16) 0.0271 (16) 0.049 (2) −0.0028 (13) 0.0011 (15) −0.0025 (15)
C5 0.0397 (19) 0.0227 (16) 0.068 (3) −0.0011 (15) −0.0021 (18) 0.0024 (16)
C6 0.0390 (19) 0.0301 (18) 0.053 (2) −0.0029 (15) −0.0025 (17) 0.0164 (16)
C7 0.0245 (15) 0.0318 (17) 0.0393 (19) −0.0044 (13) −0.0043 (13) 0.0089 (14)
C8 0.0374 (18) 0.047 (2) 0.0331 (19) −0.0060 (16) −0.0018 (15) 0.0127 (16)
C9 0.0413 (19) 0.050 (2) 0.0238 (17) −0.0036 (16) −0.0022 (14) −0.0013 (15)
C10 0.0293 (16) 0.0340 (17) 0.0303 (17) −0.0014 (14) −0.0010 (13) −0.0011 (13)
C11 0.0210 (14) 0.0272 (15) 0.0314 (17) −0.0034 (12) −0.0024 (12) 0.0022 (12)
C12 0.0223 (14) 0.0261 (15) 0.0360 (18) −0.0014 (12) 0.0002 (12) −0.0006 (13)
C13 0.046 (2) 0.064 (3) 0.0282 (19) −0.0095 (19) −0.0032 (16) −0.0023 (17)
C14 0.052 (2) 0.0385 (19) 0.037 (2) 0.0000 (17) 0.0006 (17) −0.0080 (16)
O1 0.0481 (16) 0.097 (3) 0.0412 (17) −0.0195 (17) 0.0000 (13) 0.0045 (16)
O2 0.063 (2) 0.083 (2) 0.059 (2) −0.0335 (18) 0.0073 (16) −0.0249 (18)
O3 0.0481 (17) 0.0449 (17) 0.101 (3) 0.0117 (14) −0.0200 (17) −0.0033 (17)
O4 0.0404 (17) 0.059 (2) 0.183 (5) −0.0152 (16) −0.040 (2) 0.027 (2)
C15 0.0266 (15) 0.0300 (16) 0.042 (2) 0.0048 (13) −0.0038 (14) 0.0032 (14)
C16 0.0349 (17) 0.0307 (17) 0.042 (2) −0.0006 (14) −0.0031 (15) 0.0068 (14)
C17 0.0327 (17) 0.0369 (18) 0.0327 (18) 0.0018 (15) −0.0001 (14) 0.0021 (14)

Geometric parameters (Å, °)

Co1—O1 2.180 (3) C7—C8 1.400 (5)
Co1—O2 2.145 (3) C8—C9 1.361 (5)
Co1—O3i 2.229 (3) C8—H8A 0.9300
Co1—O4i 2.126 (4) C9—C10 1.399 (5)
Co1—N1 2.122 (3) C9—H9A 0.9300
Co1—N2 2.103 (3) C10—C14 1.489 (5)
Co1—C15 2.512 (4) C11—C12 1.440 (5)
Co1—C17i 2.519 (3) C13—H13A 0.9600
N1—C1 1.338 (4) C13—H13B 0.9600
N1—C12 1.350 (4) C13—H13C 0.9600
N2—C10 1.328 (4) C14—H14A 0.9600
N2—C11 1.364 (4) C14—H14B 0.9600
C1—C2 1.410 (5) C14—H14C 0.9600
C1—C13 1.485 (5) O1—C15 1.233 (4)
C2—C3 1.352 (6) O2—C15 1.246 (5)
C2—H2A 0.9300 O3—C17 1.240 (4)
C3—C4 1.405 (5) O3—Co1ii 2.229 (3)
C3—H3A 0.9300 O4—C17 1.226 (5)
C4—C12 1.411 (4) O4—Co1ii 2.126 (4)
C4—C5 1.428 (5) C15—C16 1.511 (5)
C5—C6 1.350 (6) C16—C17 1.509 (5)
C5—H5A 0.9300 C16—H16A 0.9700
C6—C7 1.436 (5) C16—H16C 0.9700
C6—H6A 0.9300 C17—Co1ii 2.519 (3)
C7—C11 1.398 (4)
N2—Co1—N1 79.24 (10) C9—C8—H8A 120.3
N2—Co1—O4i 119.53 (16) C7—C8—H8A 120.3
N1—Co1—O4i 140.97 (13) C8—C9—C10 120.8 (3)
N2—Co1—O2 136.06 (13) C8—C9—H9A 119.6
N1—Co1—O2 92.45 (12) C10—C9—H9A 119.6
O4i—Co1—O2 93.90 (16) N2—C10—C9 120.9 (3)
N2—Co1—O1 89.80 (11) N2—C10—C14 118.4 (3)
N1—Co1—O1 123.50 (12) C9—C10—C14 120.7 (3)
O4i—Co1—O1 92.30 (13) N2—C11—C7 122.8 (3)
O2—Co1—O1 59.10 (12) N2—C11—C12 117.3 (3)
N2—Co1—O3i 97.95 (12) C7—C11—C12 119.9 (3)
N1—Co1—O3i 86.71 (11) N1—C12—C4 123.0 (3)
O4i—Co1—O3i 58.47 (12) N1—C12—C11 117.8 (3)
O2—Co1—O3i 124.82 (14) C4—C12—C11 119.2 (3)
O1—Co1—O3i 149.76 (13) C1—C13—H13A 109.5
C1—N1—C12 119.0 (3) C1—C13—H13B 109.5
C1—N1—Co1 128.3 (2) H13A—C13—H13B 109.5
C12—N1—Co1 112.6 (2) C1—C13—H13C 109.5
C10—N2—C11 118.9 (3) H13A—C13—H13C 109.5
C10—N2—Co1 128.1 (2) H13B—C13—H13C 109.5
C11—N2—Co1 113.0 (2) C10—C14—H14A 109.5
N1—C1—C2 120.9 (3) C10—C14—H14B 109.5
N1—C1—C13 118.2 (3) H14A—C14—H14B 109.5
C2—C1—C13 120.9 (3) C10—C14—H14C 109.5
C3—C2—C1 120.4 (3) H14A—C14—H14C 109.5
C3—C2—H2A 119.8 H14B—C14—H14C 109.5
C1—C2—H2A 119.8 C15—O1—Co1 90.4 (2)
C2—C3—C4 120.0 (3) C15—O2—Co1 91.7 (2)
C2—C3—H3A 120.0 O1—C15—O2 118.8 (3)
C4—C3—H3A 120.0 O1—C15—C16 120.9 (3)
C3—C4—C12 116.7 (3) O2—C15—C16 120.3 (3)
C3—C4—C5 123.9 (3) O1—C15—Co1 60.2 (2)
C12—C4—C5 119.4 (3) O2—C15—Co1 58.6 (2)
C6—C5—C4 121.2 (3) C16—C15—Co1 178.2 (2)
C6—C5—H5A 119.4 C17—C16—C15 113.5 (3)
C4—C5—H5A 119.4 C17—C16—H16A 108.9
C5—C6—C7 120.8 (3) C15—C16—H16A 108.9
C5—C6—H6A 119.6 C17—C16—H16C 108.9
C7—C6—H6A 119.6 C15—C16—H16C 108.9
C11—C7—C8 117.2 (3) H16A—C16—H16C 107.7
C11—C7—C6 119.4 (3) O4—C17—O3 119.4 (4)
C8—C7—C6 123.4 (3) O4—C17—C16 120.1 (3)
C9—C8—C7 119.4 (3) O3—C17—C16 120.5 (3)

Symmetry codes: (i) x−1, y, z; (ii) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: GK2299).

References

  1. Higashi, T. (1995). ABSCOR Rigaku Corporation, Tokyo, Japan.
  2. Rao, C. N. R., Natarajan, S. & Vaidhyanathan, R. (2004). Angew. Chem. Int. Ed.43, 1466–1496. [DOI] [PubMed]
  3. Rigaku (1998). RAPID-AUTO Rigaku Corporation, Tokyo, Japan.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Zheng, Y.-Q., Lin, J.-L. & Kong, Z.-P. (2004). Inorg. Chem.43, 2590–2596. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810038043/gk2299sup1.cif

e-66-m1327-sup1.cif (17.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038043/gk2299Isup2.hkl

e-66-m1327-Isup2.hkl (162.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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