Abstract
The title Schiff base compound, C8H7ClN4O2S, was prepared by the reaction of equimolar quantities of 2-chloro-5-nitrobenzaldehyde with thiosemicarbazide in methanol. The molecule adopts a trans configuration with respect to the azomethine group and the dihedral angle between the benzene ring and the thiosemicarbazide group is 6.8 (3)°. In the crystal, molecules are linked through intermolecular N—H⋯S hydrogen bonds, forming chains propagating in [010].
Related literature
For the crystal structures of similar Schiff base compounds, see: Ferrari et al. (1999 ▶); Shanmuga Sundara Raj et al. (2000 ▶); Chattopadhyay et al. (1988 ▶). For a similar compound reported by the author, see: Hao (2010 ▶). For reference structural data, see: Allen et al. (1987 ▶).
Experimental
Crystal data
C8H7ClN4O2S
M r = 258.69
Monoclinic,
a = 11.611 (2) Å
b = 8.439 (2) Å
c = 12.016 (3) Å
β = 113.909 (2)°
V = 1076.4 (4) Å3
Z = 4
Mo Kα radiation
μ = 0.54 mm−1
T = 298 K
0.18 × 0.17 × 0.17 mm
Data collection
Bruker SMART CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.909, T max = 0.914
6657 measured reflections
2344 independent reflections
1573 reflections with I > 2σ(I)
R int = 0.038
Refinement
R[F 2 > 2σ(F 2)] = 0.039
wR(F 2) = 0.111
S = 1.02
2344 reflections
154 parameters
4 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.20 e Å−3
Δρmin = −0.17 e Å−3
Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810035701/hb5633sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810035701/hb5633Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N4—H4A⋯S1i | 0.89 (1) | 2.53 (1) | 3.408 (2) | 173 (2) |
N3—H3⋯S1ii | 0.90 (1) | 2.46 (1) | 3.3266 (19) | 161 (2) |
Symmetry codes: (i) ; (ii)
.
supplementary crystallographic information
Comment
Recently, the crystal structures of a number of Schiff base compounds bearing the hydrazone groups derived from the thiosemicarbazide with aldehydes have been reported (Ferrari et al., 1999; Shanmuga Sundara Raj et al., 2000; Chattopadhyay et al., 1988). Recently, the author has reported a Schiff base compound derived from the thiosemicarbazide with 2-hydroxy-4-methoxybenzaldehyde (Hao, 2010), in this paper, the title new Schiff base compound, (I), Fig. 1, is reported.
The molecule of the title compound adopts a trans configuration with respect to the azomethine group. All the bond lengths are within normal values (Allen et al., 1987). The dihedral angle between the C1-C6 benzene ring and the plane defined by N2-N3-C8-S1-N4 is 6.8 (3)°, indicating the planar of the molecule. In the crystal structure, molecules are linked through intermolecular N—H···S hydrogen bonds (Table 1), to form chains (Fig. 2).
Experimental
2-Chloro-5-nitrobenzaldehyde (0.1 mmol, 18.6 mg) and thiosemicarbazide (0.1 mmol, 9.1 mg) were refluxed in methanol (30 ml) for 30 min to give a clear yellow solution. Yellow blocks of (I) were formed by slow evaporation of the solvent over several days at room temperature.
Refinement
H3, H4A and H4B were located from a difference Fourier map and refined isotropically, with the N—H and H···H distances restrained to 0.90 (1) Å and 1.43 (2) Å, respectively, and with Uiso restrained to 0.08Å2. Other H atoms were constrained to ideal geometries, with d(C—H) = 0.93 Å, and with Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
The molecular structure of the title compound with 30% probability ellipsoids.
Fig. 2.
Crystal packing of the title compound with hydrogen bonds drawn as dashed lines.
Crystal data
C8H7ClN4O2S | F(000) = 528 |
Mr = 258.69 | Dx = 1.596 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1613 reflections |
a = 11.611 (2) Å | θ = 2.8–24.7° |
b = 8.439 (2) Å | µ = 0.54 mm−1 |
c = 12.016 (3) Å | T = 298 K |
β = 113.909 (2)° | Block, yellow |
V = 1076.4 (4) Å3 | 0.18 × 0.17 × 0.17 mm |
Z = 4 |
Data collection
Bruker SMART CCD diffractometer | 2344 independent reflections |
Radiation source: fine-focus sealed tube | 1573 reflections with I > 2σ(I) |
graphite | Rint = 0.038 |
ω scans | θmax = 27.0°, θmin = 3.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −14→14 |
Tmin = 0.909, Tmax = 0.914 | k = −7→10 |
6657 measured reflections | l = −14→15 |
Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.111 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.052P)2 + 0.1148P] where P = (Fo2 + 2Fc2)/3 |
2344 reflections | (Δ/σ)max < 0.001 |
154 parameters | Δρmax = 0.20 e Å−3 |
4 restraints | Δρmin = −0.17 e Å−3 |
Special details
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.22502 (8) | −0.41154 (8) | 0.48549 (7) | 0.0669 (3) | |
N1 | 0.11203 (19) | 0.1863 (3) | 0.67884 (19) | 0.0541 (6) | |
N2 | 0.33718 (17) | 0.0503 (2) | 0.40689 (17) | 0.0402 (5) | |
N3 | 0.39548 (18) | 0.0489 (2) | 0.32765 (18) | 0.0409 (5) | |
N4 | 0.4229 (2) | 0.3150 (2) | 0.3570 (2) | 0.0543 (6) | |
O1 | 0.13241 (19) | 0.3120 (2) | 0.64124 (19) | 0.0694 (6) | |
O2 | 0.0674 (2) | 0.1755 (3) | 0.7540 (2) | 0.0965 (8) | |
S1 | 0.50185 (6) | 0.18861 (7) | 0.19837 (6) | 0.0460 (2) | |
C1 | 0.2313 (2) | −0.0903 (3) | 0.50752 (19) | 0.0375 (5) | |
C2 | 0.1926 (2) | −0.2336 (3) | 0.5392 (2) | 0.0424 (6) | |
C3 | 0.1273 (2) | −0.2416 (3) | 0.6133 (2) | 0.0504 (6) | |
H3A | 0.1013 | −0.3389 | 0.6314 | 0.061* | |
C4 | 0.1014 (2) | −0.1031 (3) | 0.6600 (2) | 0.0506 (6) | |
H4 | 0.0584 | −0.1054 | 0.7107 | 0.061* | |
C5 | 0.1405 (2) | 0.0385 (3) | 0.6300 (2) | 0.0422 (6) | |
C6 | 0.2036 (2) | 0.0480 (3) | 0.5549 (2) | 0.0406 (5) | |
H6 | 0.2275 | 0.1460 | 0.5360 | 0.049* | |
C7 | 0.2974 (2) | −0.0829 (3) | 0.4273 (2) | 0.0407 (5) | |
H7 | 0.3105 | −0.1747 | 0.3912 | 0.049* | |
C8 | 0.4371 (2) | 0.1867 (2) | 0.3007 (2) | 0.0382 (5) | |
H3 | 0.412 (2) | −0.0446 (19) | 0.301 (2) | 0.080* | |
H4B | 0.394 (3) | 0.312 (3) | 0.4146 (19) | 0.080* | |
H4A | 0.450 (2) | 0.4093 (18) | 0.346 (2) | 0.080* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.1005 (6) | 0.0371 (4) | 0.0800 (5) | −0.0034 (3) | 0.0541 (4) | 0.0020 (3) |
N1 | 0.0526 (13) | 0.0621 (15) | 0.0564 (14) | 0.0075 (11) | 0.0311 (11) | −0.0029 (11) |
N2 | 0.0496 (11) | 0.0372 (11) | 0.0447 (12) | 0.0008 (9) | 0.0303 (9) | 0.0032 (9) |
N3 | 0.0569 (12) | 0.0283 (10) | 0.0533 (13) | 0.0023 (9) | 0.0385 (10) | 0.0013 (9) |
N4 | 0.0835 (16) | 0.0338 (11) | 0.0712 (15) | −0.0090 (11) | 0.0578 (13) | −0.0081 (11) |
O1 | 0.0868 (14) | 0.0503 (12) | 0.0874 (15) | 0.0001 (10) | 0.0521 (12) | −0.0058 (11) |
O2 | 0.143 (2) | 0.0869 (16) | 0.1135 (18) | 0.0285 (15) | 0.1077 (17) | 0.0100 (14) |
S1 | 0.0628 (4) | 0.0345 (3) | 0.0580 (4) | −0.0034 (3) | 0.0423 (3) | 0.0004 (3) |
C1 | 0.0400 (12) | 0.0374 (13) | 0.0381 (13) | −0.0023 (10) | 0.0190 (11) | 0.0026 (10) |
C2 | 0.0497 (14) | 0.0366 (12) | 0.0432 (14) | −0.0023 (10) | 0.0213 (11) | 0.0017 (10) |
C3 | 0.0563 (15) | 0.0509 (15) | 0.0503 (15) | −0.0118 (12) | 0.0281 (13) | 0.0073 (12) |
C4 | 0.0515 (15) | 0.0632 (17) | 0.0483 (15) | −0.0046 (13) | 0.0317 (12) | 0.0042 (13) |
C5 | 0.0416 (13) | 0.0480 (14) | 0.0413 (14) | 0.0005 (11) | 0.0214 (11) | −0.0010 (11) |
C6 | 0.0431 (13) | 0.0384 (13) | 0.0457 (14) | −0.0031 (10) | 0.0236 (11) | 0.0037 (10) |
C7 | 0.0496 (14) | 0.0333 (12) | 0.0486 (14) | 0.0012 (10) | 0.0294 (12) | −0.0009 (11) |
C8 | 0.0435 (13) | 0.0310 (12) | 0.0460 (14) | −0.0001 (10) | 0.0243 (11) | 0.0023 (10) |
Geometric parameters (Å, °)
Cl1—C2 | 1.735 (2) | C1—C6 | 1.393 (3) |
N1—O2 | 1.214 (3) | C1—C2 | 1.396 (3) |
N1—O1 | 1.214 (3) | C1—C7 | 1.456 (3) |
N1—C5 | 1.471 (3) | C2—C3 | 1.386 (3) |
N2—C7 | 1.277 (3) | C3—C4 | 1.382 (4) |
N2—N3 | 1.374 (2) | C3—H3A | 0.9300 |
N3—C8 | 1.348 (3) | C4—C5 | 1.378 (3) |
N3—H3 | 0.899 (10) | C4—H4 | 0.9300 |
N4—C8 | 1.322 (3) | C5—C6 | 1.376 (3) |
N4—H4B | 0.88 (3) | C6—H6 | 0.9300 |
N4—H4A | 0.886 (10) | C7—H7 | 0.9300 |
S1—C8 | 1.681 (2) | ||
O2—N1—O1 | 123.3 (2) | C4—C3—H3A | 120.5 |
O2—N1—C5 | 117.8 (2) | C2—C3—H3A | 120.5 |
O1—N1—C5 | 118.9 (2) | C5—C4—C3 | 118.6 (2) |
C7—N2—N3 | 116.36 (19) | C5—C4—H4 | 120.7 |
C8—N3—N2 | 118.95 (18) | C3—C4—H4 | 120.7 |
C8—N3—H3 | 121.7 (18) | C6—C5—C4 | 122.8 (2) |
N2—N3—H3 | 119.1 (18) | C6—C5—N1 | 118.5 (2) |
C8—N4—H4B | 122.8 (17) | C4—C5—N1 | 118.6 (2) |
C8—N4—H4A | 122.1 (17) | C5—C6—C1 | 119.5 (2) |
H4B—N4—H4A | 115 (2) | C5—C6—H6 | 120.3 |
C6—C1—C2 | 117.5 (2) | C1—C6—H6 | 120.3 |
C6—C1—C7 | 120.4 (2) | N2—C7—C1 | 119.6 (2) |
C2—C1—C7 | 122.1 (2) | N2—C7—H7 | 120.2 |
C3—C2—C1 | 122.6 (2) | C1—C7—H7 | 120.2 |
C3—C2—Cl1 | 117.04 (19) | N4—C8—N3 | 116.9 (2) |
C1—C2—Cl1 | 120.40 (18) | N4—C8—S1 | 123.49 (17) |
C4—C3—C2 | 119.1 (2) | N3—C8—S1 | 119.59 (16) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4A···S1i | 0.89 (1) | 2.53 (1) | 3.408 (2) | 173 (2) |
N3—H3···S1ii | 0.90 (1) | 2.46 (1) | 3.3266 (19) | 161 (2) |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x+1, y−1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5633).
References
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Bruker (2002). SAINT and SMART Bruker AXS Inc., Madison, Wisconsin, USA.
- Chattopadhyay, D., Mazumdar, S. K., Banerjee, T., Ghosh, S. & Mak, T. C. W. (1988). Acta Cryst. C44, 1025–1028. [DOI] [PubMed]
- Ferrari, M. B., Capacchi, S., Pelosi, G., Reffo, G., Tarasconi, P., Albertini, R., Pinelli, S. & Lunghi, P. (1999). Inorg. Chim. Acta, 286, 134–141. [DOI] [PubMed]
- Hao, Y.-M. (2010). Acta Cryst. E66, o2211. [DOI] [PMC free article] [PubMed]
- Shanmuga Sundara Raj, S., Fun, H.-K., Zhang, X.-J., Tian, Y.-P., Xie, F.-X. & Ma, J.-L. (2000). Acta Cryst. C56, 1238–1239. [DOI] [PubMed]
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- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810035701/hb5633sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810035701/hb5633Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report