Abstract
The title molecule, C15H20N2O4, contains a benzene ring fused to an oxazine ring and one tert-butoxycarbonyl group bound to the N atom. An intramolecular C—H⋯O interaction occurs. In the crystal, molecules are linked through intermolecular N—H⋯O and C—H⋯O hydrogen bonds.
Related literature
For the pharmacological properties of phenylmorpholine derivatives, see: Bourlot et al. (1998 ▶); Albanese et al. (2003 ▶); La et al. (2008 ▶). For structures, see: Chen et al. (2003 ▶); Olmstead et al. (2003 ▶); Vergeer et al. (1999 ▶).
Experimental
Crystal data
C15H20N2O4
M r = 292.33
Orthorhombic,
a = 9.675 (2) Å
b = 13.137 (3) Å
c = 23.128 (5) Å
V = 2939.7 (12) Å3
Z = 8
Mo Kα radiation
μ = 0.10 mm−1
T = 103 K
0.43 × 0.40 × 0.18 mm
Data collection
Rigaku SPIDER diffractometer
20907 measured reflections
3367 independent reflections
3005 reflections with I > 2σ(I)
R int = 0.039
Refinement
R[F 2 > 2σ(F 2)] = 0.048
wR(F 2) = 0.114
S = 1.00
3367 reflections
198 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.29 e Å−3
Δρmin = −0.28 e Å−3
Data collection: RAPID-AUTO (Rigaku, 2004 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810036937/jh2200sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810036937/jh2200Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2N⋯O4i | 0.879 (19) | 2.051 (19) | 2.9251 (17) | 173.1 (16) |
| C5—H5⋯O4 | 0.95 | 2.27 | 2.8771 (19) | 121 |
| C11—H11B⋯O3ii | 0.98 | 2.49 | 3.456 (2) | 168 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
This work was supported financially by Jiangsu Province ’s Key Medical Talents Program (No. RC2007097).
supplementary crystallographic information
Comment
The stucture of the title compound, (I), is an important phenylmorpholine product. Phenylmorpholine compounds are used as α2 C adrenergic receptor agonists. Numerous phenylmorpholine derivatives possess various pharmacological properties (Bourlot, et al., 1998; Albanese, et al., 2003; La et al., 2008).
We report here the crystal structure of the title compound. (Fig. 1). The title molecule of (I) contains a benzene ring fused to an oxazine ring and one tert-butoxycarbonyl bound to the N atom. The N1—C8 bond distance is 1.4208 (18) Å and agrees with literature values (Vergeer, et al., 1999; Chen, et al., 2003; Olmstead, et al., 2003). The conformation of the six-membered heterocyclic ring shows that C1 and C2 are out of the plane of the remaining four atoms by 0.5950 (16) and -0.0818 (16) Å, respectively.
The molecules are linked through hydrogen-bonding interactions of types N—H···O and C—H···O (Table 1).
Experimental
The title compound was crystallized from a mixed solvent composed of dichloromethane and hexane (1:1); colorlessblock-shaped crystals were obtained after several days.
Refinement
Positional parameters of all the H atomsbonded to C atoms were calculated geometrically and were allowed to ride on the C atoms to which they were bonded, with C—H distances of 0.95Å (CH), 0.98Å (CH3) or 0.99Å (CH2), and with Uiso(H) =1.2Ueqof the parent atoms. The H-atoms bonded to N atoms was taken from a difference map and was allowed to refine freely.
Figures
Fig. 1.
A view of the title compound with the atomic numbering scheme. Displacement ellipsoids were drawn at the 50% probability level.
Crystal data
| C15H20N2O4 | F(000) = 1248 |
| Mr = 292.33 | Dx = 1.321 Mg m−3 |
| Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ac 2ab | Cell parameters from 8192 reflections |
| a = 9.675 (2) Å | θ = 3.1–27.5° |
| b = 13.137 (3) Å | µ = 0.10 mm−1 |
| c = 23.128 (5) Å | T = 103 K |
| V = 2939.7 (12) Å3 | Chunk, colorless |
| Z = 8 | 0.43 × 0.40 × 0.18 mm |
Data collection
| Rigaku SPIDER diffractometer | 3005 reflections with I > 2σ(I) |
| Radiation source: Rotating Anode | Rint = 0.039 |
| graphite | θmax = 27.5°, θmin = 3.1° |
| ω scans | h = −12→12 |
| 20907 measured reflections | k = −16→17 |
| 3367 independent reflections | l = −29→29 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.114 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.00 | w = 1/[σ2(Fo2) + (0.0536P)2 + 1.960P] where P = (Fo2 + 2Fc2)/3 |
| 3367 reflections | (Δ/σ)max < 0.001 |
| 198 parameters | Δρmax = 0.29 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.16030 (11) | 0.52261 (8) | 0.61658 (5) | 0.0221 (3) | |
| O2 | 0.53747 (10) | 0.73649 (7) | 0.57927 (4) | 0.0173 (2) | |
| O3 | 0.62739 (12) | 0.58152 (8) | 0.55786 (5) | 0.0239 (3) | |
| O4 | 0.08299 (11) | 0.93078 (8) | 0.77211 (5) | 0.0222 (3) | |
| N1 | 0.43426 (13) | 0.59636 (9) | 0.61318 (5) | 0.0164 (3) | |
| N2 | 0.28810 (12) | 0.88225 (9) | 0.73211 (5) | 0.0146 (3) | |
| C1 | 0.40682 (16) | 0.48702 (11) | 0.61007 (7) | 0.0201 (3) | |
| H1A | 0.4110 | 0.4569 | 0.6493 | 0.024* | |
| H1B | 0.4775 | 0.4534 | 0.5857 | 0.024* | |
| C2 | 0.26528 (17) | 0.47066 (11) | 0.58444 (7) | 0.0212 (3) | |
| H2A | 0.2647 | 0.4954 | 0.5440 | 0.025* | |
| H2B | 0.2445 | 0.3969 | 0.5839 | 0.025* | |
| C3 | 0.19649 (15) | 0.61199 (11) | 0.64273 (6) | 0.0162 (3) | |
| C4 | 0.09200 (15) | 0.66258 (11) | 0.67188 (6) | 0.0178 (3) | |
| H4 | 0.0014 | 0.6348 | 0.6718 | 0.021* | |
| C5 | 0.11645 (15) | 0.75263 (11) | 0.70112 (6) | 0.0166 (3) | |
| H5 | 0.0431 | 0.7872 | 0.7200 | 0.020* | |
| C6 | 0.25037 (15) | 0.79196 (10) | 0.70245 (6) | 0.0140 (3) | |
| C7 | 0.35627 (14) | 0.74149 (10) | 0.67329 (6) | 0.0145 (3) | |
| H7 | 0.4475 | 0.7681 | 0.6745 | 0.017* | |
| C8 | 0.33000 (15) | 0.65256 (11) | 0.64237 (6) | 0.0145 (3) | |
| C9 | 0.54187 (15) | 0.63514 (11) | 0.58119 (6) | 0.0159 (3) | |
| C10 | 0.65864 (16) | 0.79588 (12) | 0.56032 (7) | 0.0200 (3) | |
| C11 | 0.60965 (17) | 0.90434 (11) | 0.56794 (7) | 0.0237 (3) | |
| H11A | 0.5321 | 0.9174 | 0.5417 | 0.028* | |
| H11B | 0.6855 | 0.9512 | 0.5591 | 0.028* | |
| H11C | 0.5796 | 0.9146 | 0.6080 | 0.028* | |
| C12 | 0.6938 (3) | 0.77433 (14) | 0.49806 (9) | 0.0433 (5) | |
| H12A | 0.7274 | 0.7043 | 0.4944 | 0.052* | |
| H12B | 0.7658 | 0.8216 | 0.4851 | 0.052* | |
| H12C | 0.6111 | 0.7831 | 0.4741 | 0.052* | |
| C13 | 0.7775 (2) | 0.77283 (15) | 0.60145 (11) | 0.0425 (5) | |
| H13A | 0.7467 | 0.7825 | 0.6414 | 0.051* | |
| H13B | 0.8548 | 0.8189 | 0.5933 | 0.051* | |
| H13C | 0.8077 | 0.7022 | 0.5961 | 0.051* | |
| C14 | 0.20747 (14) | 0.94428 (11) | 0.76449 (6) | 0.0155 (3) | |
| C15 | 0.28116 (15) | 1.03281 (11) | 0.79194 (6) | 0.0188 (3) | |
| H15A | 0.2406 | 1.0966 | 0.7780 | 0.023* | |
| H15B | 0.3793 | 1.0306 | 0.7816 | 0.023* | |
| H15C | 0.2715 | 1.0289 | 0.8341 | 0.023* | |
| H2N | 0.375 (2) | 0.9008 (13) | 0.7287 (8) | 0.022 (5)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0204 (6) | 0.0195 (5) | 0.0263 (6) | −0.0049 (4) | 0.0015 (4) | −0.0083 (4) |
| O2 | 0.0147 (5) | 0.0148 (5) | 0.0224 (5) | −0.0012 (4) | 0.0056 (4) | 0.0001 (4) |
| O3 | 0.0232 (6) | 0.0193 (5) | 0.0292 (6) | 0.0037 (5) | 0.0103 (5) | −0.0013 (5) |
| O4 | 0.0124 (5) | 0.0268 (6) | 0.0275 (6) | −0.0001 (4) | 0.0030 (4) | −0.0073 (5) |
| N1 | 0.0167 (6) | 0.0136 (6) | 0.0189 (6) | 0.0006 (5) | 0.0039 (5) | −0.0008 (5) |
| N2 | 0.0107 (6) | 0.0153 (6) | 0.0179 (6) | −0.0017 (5) | 0.0012 (4) | −0.0010 (5) |
| C1 | 0.0240 (8) | 0.0134 (7) | 0.0230 (8) | 0.0007 (6) | 0.0048 (6) | 0.0001 (6) |
| C2 | 0.0268 (8) | 0.0163 (7) | 0.0205 (7) | −0.0020 (6) | 0.0038 (6) | −0.0035 (6) |
| C3 | 0.0188 (7) | 0.0153 (7) | 0.0145 (6) | −0.0021 (6) | −0.0023 (5) | 0.0000 (5) |
| C4 | 0.0128 (7) | 0.0205 (7) | 0.0202 (7) | −0.0035 (6) | −0.0006 (5) | 0.0001 (6) |
| C5 | 0.0120 (6) | 0.0187 (7) | 0.0191 (7) | −0.0006 (5) | 0.0022 (5) | −0.0001 (5) |
| C6 | 0.0151 (7) | 0.0150 (6) | 0.0119 (6) | −0.0003 (5) | −0.0001 (5) | 0.0016 (5) |
| C7 | 0.0125 (7) | 0.0164 (7) | 0.0146 (6) | −0.0016 (5) | 0.0004 (5) | 0.0020 (5) |
| C8 | 0.0144 (7) | 0.0159 (7) | 0.0130 (6) | 0.0019 (5) | 0.0016 (5) | 0.0020 (5) |
| C9 | 0.0156 (7) | 0.0167 (7) | 0.0153 (6) | 0.0014 (6) | −0.0011 (5) | 0.0005 (5) |
| C10 | 0.0166 (7) | 0.0195 (7) | 0.0237 (8) | −0.0036 (6) | 0.0076 (6) | 0.0011 (6) |
| C11 | 0.0250 (8) | 0.0182 (7) | 0.0280 (8) | −0.0039 (6) | 0.0068 (6) | −0.0011 (6) |
| C12 | 0.0707 (15) | 0.0260 (9) | 0.0330 (10) | −0.0041 (10) | 0.0303 (10) | −0.0012 (8) |
| C13 | 0.0241 (10) | 0.0336 (10) | 0.0697 (15) | −0.0061 (8) | −0.0121 (9) | 0.0070 (10) |
| C14 | 0.0146 (7) | 0.0170 (7) | 0.0148 (7) | 0.0012 (5) | −0.0007 (5) | 0.0020 (5) |
| C15 | 0.0169 (7) | 0.0198 (7) | 0.0197 (7) | −0.0007 (6) | 0.0016 (5) | −0.0034 (6) |
Geometric parameters (Å, °)
| O1—C3 | 1.3664 (17) | C5—C6 | 1.395 (2) |
| O1—C2 | 1.4317 (18) | C5—H5 | 0.9500 |
| O2—C9 | 1.3328 (18) | C6—C7 | 1.394 (2) |
| O2—C10 | 1.4749 (17) | C7—C8 | 1.393 (2) |
| O3—C9 | 1.2132 (18) | C7—H7 | 0.9500 |
| O4—C14 | 1.2301 (18) | C10—C12 | 1.506 (2) |
| N1—C9 | 1.3752 (19) | C10—C11 | 1.512 (2) |
| N1—C8 | 1.4208 (18) | C10—C13 | 1.523 (2) |
| N1—C1 | 1.4624 (19) | C11—H11A | 0.9800 |
| N2—C14 | 1.3540 (18) | C11—H11B | 0.9800 |
| N2—C6 | 1.4180 (18) | C11—H11C | 0.9800 |
| N2—H2N | 0.88 (2) | C12—H12A | 0.9800 |
| C1—C2 | 1.508 (2) | C12—H12B | 0.9800 |
| C1—H1A | 0.9900 | C12—H12C | 0.9800 |
| C1—H1B | 0.9900 | C13—H13A | 0.9800 |
| C2—H2A | 0.9900 | C13—H13B | 0.9800 |
| C2—H2B | 0.9900 | C13—H13C | 0.9800 |
| C3—C4 | 1.385 (2) | C14—C15 | 1.505 (2) |
| C3—C8 | 1.398 (2) | C15—H15A | 0.9800 |
| C4—C5 | 1.383 (2) | C15—H15B | 0.9800 |
| C4—H4 | 0.9500 | C15—H15C | 0.9800 |
| C3—O1—C2 | 117.24 (12) | C3—C8—N1 | 117.45 (13) |
| C9—O2—C10 | 120.86 (11) | O3—C9—O2 | 125.95 (14) |
| C9—N1—C8 | 126.92 (12) | O3—C9—N1 | 122.72 (13) |
| C9—N1—C1 | 118.35 (12) | O2—C9—N1 | 111.33 (12) |
| C8—N1—C1 | 113.88 (12) | O2—C10—C12 | 111.35 (14) |
| C14—N2—C6 | 128.51 (12) | O2—C10—C11 | 102.40 (12) |
| C14—N2—H2N | 115.7 (12) | C12—C10—C11 | 111.06 (14) |
| C6—N2—H2N | 115.8 (12) | O2—C10—C13 | 108.04 (13) |
| N1—C1—C2 | 108.92 (12) | C12—C10—C13 | 112.90 (17) |
| N1—C1—H1A | 109.9 | C11—C10—C13 | 110.57 (14) |
| C2—C1—H1A | 109.9 | C10—C11—H11A | 109.5 |
| N1—C1—H1B | 109.9 | C10—C11—H11B | 109.5 |
| C2—C1—H1B | 109.9 | H11A—C11—H11B | 109.5 |
| H1A—C1—H1B | 108.3 | C10—C11—H11C | 109.5 |
| O1—C2—C1 | 111.86 (12) | H11A—C11—H11C | 109.5 |
| O1—C2—H2A | 109.2 | H11B—C11—H11C | 109.5 |
| C1—C2—H2A | 109.2 | C10—C12—H12A | 109.5 |
| O1—C2—H2B | 109.2 | C10—C12—H12B | 109.5 |
| C1—C2—H2B | 109.2 | H12A—C12—H12B | 109.5 |
| H2A—C2—H2B | 107.9 | C10—C12—H12C | 109.5 |
| O1—C3—C4 | 116.16 (13) | H12A—C12—H12C | 109.5 |
| O1—C3—C8 | 124.19 (13) | H12B—C12—H12C | 109.5 |
| C4—C3—C8 | 119.64 (13) | C10—C13—H13A | 109.5 |
| C5—C4—C3 | 121.58 (13) | C10—C13—H13B | 109.5 |
| C5—C4—H4 | 119.2 | H13A—C13—H13B | 109.5 |
| C3—C4—H4 | 119.2 | C10—C13—H13C | 109.5 |
| C4—C5—C6 | 119.10 (13) | H13A—C13—H13C | 109.5 |
| C4—C5—H5 | 120.4 | H13B—C13—H13C | 109.5 |
| C6—C5—H5 | 120.4 | O4—C14—N2 | 123.82 (13) |
| C7—C6—C5 | 119.71 (13) | O4—C14—C15 | 121.00 (13) |
| C7—C6—N2 | 116.27 (13) | N2—C14—C15 | 115.18 (12) |
| C5—C6—N2 | 124.02 (13) | C14—C15—H15A | 109.5 |
| C8—C7—C6 | 120.86 (13) | C14—C15—H15B | 109.5 |
| C8—C7—H7 | 119.6 | H15A—C15—H15B | 109.5 |
| C6—C7—H7 | 119.6 | C14—C15—H15C | 109.5 |
| C7—C8—C3 | 119.04 (13) | H15A—C15—H15C | 109.5 |
| C7—C8—N1 | 123.38 (13) | H15B—C15—H15C | 109.5 |
| C9—N1—C1—C2 | −116.78 (14) | C4—C3—C8—C7 | 2.4 (2) |
| C8—N1—C1—C2 | 53.44 (16) | O1—C3—C8—N1 | −0.5 (2) |
| C3—O1—C2—C1 | 32.01 (17) | C4—C3—C8—N1 | 178.35 (12) |
| N1—C1—C2—O1 | −56.42 (16) | C9—N1—C8—C7 | −41.1 (2) |
| C2—O1—C3—C4 | 177.85 (13) | C1—N1—C8—C7 | 149.70 (13) |
| C2—O1—C3—C8 | −3.3 (2) | C9—N1—C8—C3 | 143.12 (14) |
| O1—C3—C4—C5 | 178.58 (13) | C1—N1—C8—C3 | −26.10 (18) |
| C8—C3—C4—C5 | −0.3 (2) | C10—O2—C9—O3 | −15.9 (2) |
| C3—C4—C5—C6 | −1.6 (2) | C10—O2—C9—N1 | 164.66 (12) |
| C4—C5—C6—C7 | 1.5 (2) | C8—N1—C9—O3 | 179.49 (14) |
| C4—C5—C6—N2 | −178.52 (13) | C1—N1—C9—O3 | −11.7 (2) |
| C14—N2—C6—C7 | −178.52 (13) | C8—N1—C9—O2 | −1.1 (2) |
| C14—N2—C6—C5 | 1.5 (2) | C1—N1—C9—O2 | 167.70 (12) |
| C5—C6—C7—C8 | 0.5 (2) | C9—O2—C10—C12 | 64.04 (18) |
| N2—C6—C7—C8 | −179.43 (12) | C9—O2—C10—C11 | −177.21 (13) |
| C6—C7—C8—C3 | −2.5 (2) | C9—O2—C10—C13 | −60.47 (18) |
| C6—C7—C8—N1 | −178.20 (12) | C6—N2—C14—O4 | −1.4 (2) |
| O1—C3—C8—C7 | −176.45 (13) | C6—N2—C14—C15 | 178.02 (13) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2N···O4i | 0.879 (19) | 2.051 (19) | 2.9251 (17) | 173.1 (16) |
| C1—H1B···O3 | 0.99 | 2.31 | 2.748 (2) | 105 |
| C5—H5···O4 | 0.95 | 2.27 | 2.8771 (19) | 121 |
| C7—H7···O2 | 0.95 | 2.40 | 2.7940 (18) | 104 |
| C11—H11B···O3ii | 0.98 | 2.49 | 3.456 (2) | 168 |
| C12—H12A···O3 | 0.98 | 2.39 | 2.957 (2) | 117 |
| C13—H13C···O3 | 0.98 | 2.52 | 3.073 (2) | 116 |
Symmetry codes: (i) x+1/2, y, −z+3/2; (ii) −x+3/2, y+1/2, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: JH2200).
References
- Albanese, D., Landini, D., Lupi, V. & Penso, M. (2003). Ind. Eng. Chem. Res.42, 680–686.
- Bourlot, A.-S., Sánchez, I., Dureng, G., Guillaumet, G., Massingham, R., Monteil, A., Winslow, E., Pujol, M. D. & Mérour, J.-Y. (1998). J. Med. Chem.41, 3142–3158. [DOI] [PubMed]
- Chen, Y., Zhang, L. & Chen, Z. (2003). Acta Cryst. E59, m429–m430.
- La, D. S., Belzile, J., Bready, J. V., Coxon, A., DeMelfi, T., Doerr, N., Estrada, J., Flynn, J. C., Flynn, S. R., Graceffa, R. F., Harriman, S. P., Larrow, J. F., Long, A. M., Martin, M. W., Morrison, M. J., Patel, V. F., Roveto, P. M., Wang, L., Weiss, M. N., Whittington, D. A., Teffera, Y., Zhao, Z., Polverino, A. J. & Harmange, J.-C. (2008). J. Med. Chem.51, 1695–1705. [DOI] [PubMed]
- Olmstead, M. M., Troeltzsch, C. & Patten, T. E. (2003). Acta Cryst. E59, m502–m503.
- Rigaku (2004). RAPID-AUTO Rigaku Corporation, Tokyo, Japan.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Vergeer, P., Kooijman, H., Schreurs, A. M. M., Kroon, J. & Grech, E. (1999). Acta Cryst. C55, 1822–1824.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810036937/jh2200sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810036937/jh2200Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

