Abstract
In the title compound, C16H13FO2S, the O atom and the 4-fluorophenyl group of the 4-fluorophenylsulfinyl substituent are located on opposite sides of the plane through the benzofuran fragment; the 4-fluorophenyl ring is nearly perpendicular to this plane, making a dihedral angle of 87.41 (3). The crystal structure exhibits a weak intermolecular C—H⋯O hydrogen bond.
Related literature
For the crystal structures of similar 2-methyl-3-phenylsulfinyl-1-benzofuran derivatives, see: Choi et al. (2007 ▶, 2008a
▶,b
▶). For the pharmacological activity of benzofuran compounds, see: Aslam et al. (2006 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶).
Experimental
Crystal data
C16H13FO2S
M r = 288.32
Monoclinic,
a = 11.3951 (5) Å
b = 6.1223 (3) Å
c = 19.6899 (9) Å
β = 100.155 (2)°
V = 1352.13 (11) Å3
Z = 4
Mo Kα radiation
μ = 0.25 mm−1
T = 173 K
0.30 × 0.30 × 0.21 mm
Data collection
Bruker SMART APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.645, T max = 0.746
22996 measured reflections
3115 independent reflections
2830 reflections with I > 2σ(I)
R int = 0.032
Refinement
R[F 2 > 2σ(F 2)] = 0.035
wR(F 2) = 0.099
S = 1.07
3115 reflections
183 parameters
H-atom parameters constrained
Δρmax = 0.30 e Å−3
Δρmin = −0.32 e Å−3
Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810003740/fk2012sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810003740/fk2012Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
C10—H10B⋯O2i | 0.98 | 2.62 | 3.554 (2) | 159 |
Symmetry code: (i) .
supplementary crystallographic information
Comment
Molecules containing benzofuran skeleton show various pharmacological activities such as antifungal (Aslam et al., 2006), antitumor and antiviral (Galal et al., 2009), antimicrobial (Khan et al., 2005) properties, and these compounds are widely occurring in nature (Akgul & Anil, 2003; Soekamto et al., 2003). As a part of our ongoing studies of the effect of side chain substituents on the solid state structures of 2-methyl-3-phenylsulfinyl-1-benzofuran analogues (Choi et al., 2007, 2008a,b), we report the crystal structure of the title compound (Fig. 1).
The benzofuran unit is essentially planar, with a mean deviation of 0.009 (1) ° from the least-squares plane defined by the nine constituent atoms. The 4-fluorophenyl ring is almost perpendicular to the plane of the benzofuran fragment [87.41 (3)°] and is tilted slightly towards it. The crystal packing (Fig. 2) is stabilized by a weak intermolecular C—H···O hydrogen bond between the methyl H atom and the oxygen of the S═O unit, with a C10—H10B···O2i (Table 1).
Experimental
77% 3-Chloroperoxybenzoic acid (291 mg, 1.3 mmol) was added in small portions to a stirred solution of 3-(4-fluorophenylsulfanyl)-2,5-dimethyl-1-benzofuran (326 mg, 1.2 mmol) in dichloromethane (30 mL) at 273 K. After being stirred at room temperature for 3h, the mixture was washed with saturated sodium bicarbonate solution and the organic layer was separated, dried over magnesium sulfate, filtered and concentrated in vacuum. The residue was purified by column chromatography (hexane-ethyl acetate, 1:1 v/v) to afford the title compound as a colorless solid [yield 80%, m.p. 420-421 K; Rf = 0.69 (hexane-ethyl acetate, 1:1 v/v)]. Single crystals suitable for X-ray diffraction were prepared by slow evaporation of a solution of the title compound in ethyl acetate at room temperature.
Refinement
All H atoms were positioned geometrically and refined using a riding model, with C–H = 0.95 Å for aryl and 0.98 Å for methyl H atoms. Uiso(H) = 1.2Ueq (C) for aryl and 1.5Ueq(C) for methyl H atoms.
Figures
Fig. 1.
The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50 % probability level. H atoms are presented as a small spheres of arbitrary radius.
Fig. 2.
C–H···O interaction (dotted lines) in the crystal structure of the title compound. [Symmetry codes: (i) - x + 2, y + 1/2, - z + 3/2; (ii) - x + 2, y - 1/2, - z + 3/2.]
Crystal data
C16H13FO2S | F(000) = 600 |
Mr = 288.32 | Dx = 1.416 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9959 reflections |
a = 11.3951 (5) Å | θ = 2.5–27.6° |
b = 6.1223 (3) Å | µ = 0.25 mm−1 |
c = 19.6899 (9) Å | T = 173 K |
β = 100.155 (2)° | Block, colourless |
V = 1352.13 (11) Å3 | 0.30 × 0.30 × 0.21 mm |
Z = 4 |
Data collection
Bruker SMART APEXII CCD diffractometer | 3115 independent reflections |
Radiation source: Rotating Anode | 2830 reflections with I > 2σ(I) |
Bruker HELIOS graded multilayer optics | Rint = 0.032 |
Detector resolution: 10.0 pixels mm-1 | θmax = 27.6°, θmin = 1.8° |
φ and ω scans | h = −14→14 |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | k = −7→7 |
Tmin = 0.645, Tmax = 0.746 | l = −25→25 |
22996 measured reflections |
Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.099 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0508P)2 + 0.5136P] where P = (Fo2 + 2Fc2)/3 |
3115 reflections | (Δ/σ)max < 0.001 |
183 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
Special details
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
S | 0.93298 (3) | 0.31885 (6) | 0.605178 (18) | 0.03074 (12) | |
F1 | 0.72777 (10) | 0.51180 (19) | 0.31715 (5) | 0.0556 (3) | |
O1 | 0.68994 (9) | 0.46191 (17) | 0.71689 (5) | 0.0346 (2) | |
O2 | 0.96804 (10) | 0.08380 (18) | 0.60734 (6) | 0.0410 (3) | |
C1 | 0.80592 (12) | 0.3425 (2) | 0.64361 (7) | 0.0277 (3) | |
C2 | 0.70234 (11) | 0.2027 (2) | 0.63519 (7) | 0.0262 (3) | |
C3 | 0.66200 (12) | 0.0220 (2) | 0.59513 (7) | 0.0299 (3) | |
H3 | 0.7071 | −0.0342 | 0.5628 | 0.036* | |
C4 | 0.55514 (12) | −0.0758 (2) | 0.60278 (7) | 0.0320 (3) | |
C5 | 0.48975 (13) | 0.0120 (3) | 0.65052 (7) | 0.0358 (3) | |
H5 | 0.4167 | −0.0556 | 0.6554 | 0.043* | |
C6 | 0.52732 (13) | 0.1926 (3) | 0.69067 (8) | 0.0369 (3) | |
H6 | 0.4820 | 0.2508 | 0.7225 | 0.044* | |
C7 | 0.63433 (12) | 0.2835 (2) | 0.68184 (7) | 0.0291 (3) | |
C8 | 0.79456 (12) | 0.4921 (2) | 0.69286 (7) | 0.0310 (3) | |
C9 | 0.51060 (15) | −0.2747 (3) | 0.56091 (9) | 0.0433 (4) | |
H9A | 0.5564 | −0.2937 | 0.5236 | 0.065* | |
H9B | 0.4260 | −0.2558 | 0.5412 | 0.065* | |
H9C | 0.5204 | −0.4041 | 0.5907 | 0.065* | |
C10 | 0.87069 (16) | 0.6753 (3) | 0.72348 (8) | 0.0419 (4) | |
H10A | 0.9421 | 0.6830 | 0.7022 | 0.063* | |
H10B | 0.8942 | 0.6518 | 0.7733 | 0.063* | |
H10C | 0.8262 | 0.8126 | 0.7153 | 0.063* | |
C11 | 0.86493 (11) | 0.3744 (2) | 0.51764 (7) | 0.0266 (3) | |
C12 | 0.86759 (12) | 0.2162 (2) | 0.46786 (7) | 0.0305 (3) | |
H12 | 0.9008 | 0.0765 | 0.4804 | 0.037* | |
C13 | 0.82143 (13) | 0.2629 (3) | 0.39942 (8) | 0.0355 (3) | |
H13 | 0.8227 | 0.1568 | 0.3644 | 0.043* | |
C14 | 0.77397 (13) | 0.4659 (3) | 0.38377 (8) | 0.0364 (3) | |
C15 | 0.77240 (14) | 0.6277 (3) | 0.43241 (9) | 0.0391 (3) | |
H15 | 0.7392 | 0.7672 | 0.4196 | 0.047* | |
C16 | 0.82041 (13) | 0.5810 (2) | 0.50024 (8) | 0.0348 (3) | |
H16 | 0.8228 | 0.6901 | 0.5348 | 0.042* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
S | 0.02162 (18) | 0.0348 (2) | 0.0361 (2) | 0.00162 (12) | 0.00577 (13) | −0.00400 (13) |
F1 | 0.0606 (6) | 0.0669 (7) | 0.0382 (5) | 0.0008 (5) | 0.0062 (5) | 0.0120 (5) |
O1 | 0.0392 (5) | 0.0384 (5) | 0.0284 (5) | −0.0003 (4) | 0.0118 (4) | −0.0062 (4) |
O2 | 0.0384 (6) | 0.0412 (6) | 0.0443 (6) | 0.0170 (5) | 0.0095 (5) | 0.0035 (5) |
C1 | 0.0259 (6) | 0.0283 (6) | 0.0291 (6) | 0.0017 (5) | 0.0055 (5) | −0.0020 (5) |
C2 | 0.0242 (6) | 0.0276 (6) | 0.0271 (6) | 0.0043 (5) | 0.0051 (5) | 0.0031 (5) |
C3 | 0.0277 (6) | 0.0284 (6) | 0.0341 (7) | 0.0034 (5) | 0.0072 (5) | −0.0016 (5) |
C4 | 0.0297 (7) | 0.0301 (7) | 0.0348 (7) | 0.0004 (5) | 0.0021 (5) | 0.0047 (5) |
C5 | 0.0285 (7) | 0.0438 (8) | 0.0358 (7) | −0.0036 (6) | 0.0076 (6) | 0.0081 (6) |
C6 | 0.0342 (8) | 0.0477 (9) | 0.0319 (7) | 0.0024 (6) | 0.0140 (6) | 0.0021 (6) |
C7 | 0.0319 (7) | 0.0316 (7) | 0.0245 (6) | 0.0029 (5) | 0.0064 (5) | 0.0007 (5) |
C8 | 0.0327 (7) | 0.0332 (7) | 0.0270 (6) | 0.0017 (5) | 0.0045 (5) | −0.0007 (5) |
C9 | 0.0394 (8) | 0.0358 (8) | 0.0532 (9) | −0.0082 (6) | 0.0044 (7) | −0.0019 (7) |
C10 | 0.0495 (9) | 0.0397 (8) | 0.0359 (8) | −0.0069 (7) | 0.0057 (7) | −0.0108 (6) |
C11 | 0.0204 (6) | 0.0265 (6) | 0.0350 (7) | −0.0017 (5) | 0.0106 (5) | −0.0012 (5) |
C12 | 0.0256 (6) | 0.0258 (6) | 0.0414 (7) | 0.0004 (5) | 0.0090 (5) | −0.0041 (5) |
C13 | 0.0312 (7) | 0.0388 (7) | 0.0381 (8) | −0.0038 (6) | 0.0110 (6) | −0.0091 (6) |
C14 | 0.0309 (7) | 0.0432 (8) | 0.0364 (7) | −0.0050 (6) | 0.0097 (6) | 0.0058 (6) |
C15 | 0.0397 (8) | 0.0295 (7) | 0.0497 (9) | 0.0032 (6) | 0.0125 (7) | 0.0077 (6) |
C16 | 0.0362 (7) | 0.0269 (7) | 0.0436 (8) | 0.0026 (5) | 0.0135 (6) | −0.0036 (6) |
Geometric parameters (Å, °)
S—O2 | 1.4921 (11) | C8—C10 | 1.480 (2) |
S—C1 | 1.7540 (13) | C9—H9A | 0.9800 |
S—C11 | 1.7935 (14) | C9—H9B | 0.9800 |
F1—C14 | 1.3540 (18) | C9—H9C | 0.9800 |
O1—C8 | 1.3705 (17) | C10—H10A | 0.9800 |
O1—C7 | 1.3846 (17) | C10—H10B | 0.9800 |
C1—C8 | 1.3567 (18) | C10—H10C | 0.9800 |
C1—C2 | 1.4434 (18) | C11—C12 | 1.3824 (19) |
C2—C3 | 1.3892 (19) | C11—C16 | 1.3830 (19) |
C2—C7 | 1.3927 (18) | C12—C13 | 1.387 (2) |
C3—C4 | 1.3886 (19) | C12—H12 | 0.9500 |
C3—H3 | 0.9500 | C13—C14 | 1.369 (2) |
C4—C5 | 1.405 (2) | C13—H13 | 0.9500 |
C4—C9 | 1.508 (2) | C14—C15 | 1.380 (2) |
C5—C6 | 1.383 (2) | C15—C16 | 1.381 (2) |
C5—H5 | 0.9500 | C15—H15 | 0.9500 |
C6—C7 | 1.379 (2) | C16—H16 | 0.9500 |
C6—H6 | 0.9500 | ||
O2—S—C1 | 107.72 (7) | C4—C9—H9B | 109.5 |
O2—S—C11 | 106.18 (6) | H9A—C9—H9B | 109.5 |
C1—S—C11 | 98.57 (6) | C4—C9—H9C | 109.5 |
C8—O1—C7 | 106.49 (10) | H9A—C9—H9C | 109.5 |
C8—C1—C2 | 107.65 (12) | H9B—C9—H9C | 109.5 |
C8—C1—S | 123.65 (11) | C8—C10—H10A | 109.5 |
C2—C1—S | 128.47 (10) | C8—C10—H10B | 109.5 |
C3—C2—C7 | 119.36 (12) | H10A—C10—H10B | 109.5 |
C3—C2—C1 | 136.00 (12) | C8—C10—H10C | 109.5 |
C7—C2—C1 | 104.64 (12) | H10A—C10—H10C | 109.5 |
C4—C3—C2 | 119.37 (12) | H10B—C10—H10C | 109.5 |
C4—C3—H3 | 120.3 | C12—C11—C16 | 121.21 (13) |
C2—C3—H3 | 120.3 | C12—C11—S | 119.25 (10) |
C3—C4—C5 | 119.09 (13) | C16—C11—S | 119.29 (11) |
C3—C4—C9 | 120.40 (13) | C11—C12—C13 | 119.50 (13) |
C5—C4—C9 | 120.50 (13) | C11—C12—H12 | 120.2 |
C6—C5—C4 | 122.76 (13) | C13—C12—H12 | 120.2 |
C6—C5—H5 | 118.6 | C14—C13—C12 | 118.22 (13) |
C4—C5—H5 | 118.6 | C14—C13—H13 | 120.9 |
C7—C6—C5 | 116.24 (13) | C12—C13—H13 | 120.9 |
C7—C6—H6 | 121.9 | F1—C14—C13 | 118.51 (14) |
C5—C6—H6 | 121.9 | F1—C14—C15 | 118.21 (14) |
C6—C7—O1 | 126.34 (12) | C13—C14—C15 | 123.27 (14) |
C6—C7—C2 | 123.18 (13) | C14—C15—C16 | 118.09 (14) |
O1—C7—C2 | 110.48 (12) | C14—C15—H15 | 121.0 |
C1—C8—O1 | 110.74 (12) | C16—C15—H15 | 121.0 |
C1—C8—C10 | 132.86 (14) | C15—C16—C11 | 119.64 (14) |
O1—C8—C10 | 116.40 (12) | C15—C16—H16 | 120.2 |
C4—C9—H9A | 109.5 | C11—C16—H16 | 120.2 |
O2—S—C1—C8 | 131.07 (12) | C1—C2—C7—O1 | 0.42 (14) |
C11—S—C1—C8 | −118.80 (12) | C2—C1—C8—O1 | −0.67 (16) |
O2—S—C1—C2 | −42.67 (14) | S—C1—C8—O1 | −175.53 (9) |
C11—S—C1—C2 | 67.46 (13) | C2—C1—C8—C10 | −179.96 (15) |
C8—C1—C2—C3 | −178.80 (15) | S—C1—C8—C10 | 5.2 (2) |
S—C1—C2—C3 | −4.3 (2) | C7—O1—C8—C1 | 0.92 (15) |
C8—C1—C2—C7 | 0.15 (15) | C7—O1—C8—C10 | −179.66 (12) |
S—C1—C2—C7 | 174.69 (10) | O2—S—C11—C12 | −7.30 (12) |
C7—C2—C3—C4 | −0.5 (2) | C1—S—C11—C12 | −118.67 (11) |
C1—C2—C3—C4 | 178.31 (14) | O2—S—C11—C16 | 178.43 (11) |
C2—C3—C4—C5 | 0.6 (2) | C1—S—C11—C16 | 67.07 (12) |
C2—C3—C4—C9 | −178.81 (13) | C16—C11—C12—C13 | −2.0 (2) |
C3—C4—C5—C6 | −0.1 (2) | S—C11—C12—C13 | −176.18 (10) |
C9—C4—C5—C6 | 179.28 (14) | C11—C12—C13—C14 | −0.3 (2) |
C4—C5—C6—C7 | −0.4 (2) | C12—C13—C14—F1 | −179.40 (12) |
C5—C6—C7—O1 | −179.06 (13) | C12—C13—C14—C15 | 1.6 (2) |
C5—C6—C7—C2 | 0.5 (2) | F1—C14—C15—C16 | −179.50 (13) |
C8—O1—C7—C6 | 178.76 (14) | C13—C14—C15—C16 | −0.5 (2) |
C8—O1—C7—C2 | −0.82 (15) | C14—C15—C16—C11 | −1.9 (2) |
C3—C2—C7—C6 | 0.0 (2) | C12—C11—C16—C15 | 3.1 (2) |
C1—C2—C7—C6 | −179.18 (13) | S—C11—C16—C15 | 177.30 (11) |
C3—C2—C7—O1 | 179.58 (11) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10B···O2i | 0.98 | 2.62 | 3.554 (2) | 159 |
Symmetry codes: (i) −x+2, y+1/2, −z+3/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: FK2012).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810003740/fk2012sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810003740/fk2012Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report