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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Feb 13;66(Pt 3):o633. doi: 10.1107/S1600536810005325

3-[(1-Benzyl-1H-1,2,3-triazol-5-yl)methyl]-1,5-dimethyl-1,5-benzodiazepine-2,4-dione monohydrate

R Dardouri a, Y Kandri Rodi a, Natalie Saffon b, El Mokhtar Essassi c, Seik Weng Ng d,*
PMCID: PMC2983709  PMID: 21580389

Abstract

In the title compound, C21H21N5O2·H2O, the seven-membered ring adopts a boat-shaped conformation with the methine C atom as the prow. In the crystal, the water mol­ecule links adjacent mol­ecules by O—H⋯O and O—H⋯N hydrogen bonds into a zigzag chain running along the c axis of the monoclinic cell.

Related literature

For the crystal structure of 1,5-dimethyl-1,5-benzodiazepin-2,4-dione, see: Mondieig et al. (2005). For the water-free structure of 1-benzyl-4-[(1,5-dimethyl-2,4-dioxobenzo-1,5-diazepin-3-yl)meth­yl]-1,2,3-triazole, see: Dardouri et al. (2010).graphic file with name e-66-0o633-scheme1.jpg

Experimental

Crystal data

  • C21H21N5O2·H2O

  • M r = 393.44

  • Monoclinic, Inline graphic

  • a = 9.6002 (1) Å

  • b = 11.9497 (2) Å

  • c = 17.0860 (2) Å

  • β = 92.527 (1)°

  • V = 1958.19 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 193 K

  • 0.30 × 0.25 × 0.20 mm

Data collection

  • Bruker APEXII diffractometer

  • 34134 measured reflections

  • 4673 independent reflections

  • 3454 reflections with I > 2σ(I)

  • R int = 0.040

Refinement

  • R[F 2 > 2σ(F 2)] = 0.040

  • wR(F 2) = 0.108

  • S = 1.02

  • 4673 reflections

  • 272 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.24 e Å−3

  • Δρmin = −0.24 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810005325/bt5193sup1.cif

e-66-0o633-sup1.cif (21.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810005325/bt5193Isup2.hkl

e-66-0o633-Isup2.hkl (228.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1W—H1⋯O2 0.85 (1) 2.02 (1) 2.836 (2) 161 (2)
O1W—H2⋯N3i 0.85 (1) 2.10 (1) 2.937 (2) 170 (2)

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank the Université Sidi Mohamed Ben Abdallah, the Université Mohammed V-Agdal and the University of Malaya for supporting this study.

supplementary crystallographic information

Experimental

To a solution of 1,5-dimethyl-3-propargyl-1,5-benzodiazepine-2,4-dione (8.26 × 10 -4 mol) in toluene (15 ml) was added benzyl azide (9.91 × 10 -4 mol). The mixture was stirred under reflux and the reaction was monitored by thin layer chromatography. On completion of the reaction, the solution was concentrated and the residue was purified by column chromatography on silica gel by using a mixture (hexane/ethyl acetate 2/1). Crystals were obtained when the solvent was allowed to evaporate.

Refinement

Carbon-bound H atoms were placed in calculated positions (C—H 0.93–0.98 Å) and were included in the refinement in the riding model approximation, with U(H) set to 1.2–1.5U(C). The water H atoms were located in a difference Fourier map, and were refined isotropically with a distance restraint of O—H 0.84 (1) Å.

Figures

Fig. 1.

Fig. 1.

Anisotropic displacement ellipsoid plot (Barbour, 2001) of C21H21N5O2.H2O at the 70% probability level; hydrogen atoms are drawn as arbitrary radius.

Crystal data

C21H21N5O2·H2O F(000) = 832
Mr = 393.44 Dx = 1.335 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 7427 reflections
a = 9.6002 (1) Å θ = 2.1–28.3°
b = 11.9497 (2) Å µ = 0.09 mm1
c = 17.0860 (2) Å T = 193 K
β = 92.527 (1)° Block, colourless
V = 1958.19 (4) Å3 0.30 × 0.25 × 0.20 mm
Z = 4

Data collection

Bruker APEXII diffractometer 3454 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.040
graphite θmax = 27.5°, θmin = 2.7°
φ and ω scans h = −12→12
34134 measured reflections k = −15→15
4673 independent reflections l = −22→22

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108 H atoms treated by a mixture of independent and constrained refinement
S = 1.02 w = 1/[σ2(Fo2) + (0.0487P)2 + 0.4622P] where P = (Fo2 + 2Fc2)/3
4673 reflections (Δ/σ)max = 0.001
272 parameters Δρmax = 0.24 e Å3
2 restraints Δρmin = −0.24 e Å3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.47644 (10) 0.40995 (8) 0.56589 (5) 0.0303 (2)
O2 0.16229 (11) 0.56388 (8) 0.45303 (5) 0.0338 (2)
O1W 0.02018 (13) 0.44707 (13) 0.32908 (8) 0.0618 (4)
H1 0.0749 (19) 0.4689 (17) 0.3660 (9) 0.072 (7)*
H2 0.065 (2) 0.4105 (16) 0.2961 (10) 0.075 (7)*
N1 0.27924 (13) 0.18848 (9) 0.59919 (6) 0.0300 (3)
N2 0.25416 (14) 0.11731 (11) 0.65838 (7) 0.0400 (3)
N3 0.15632 (15) 0.16314 (12) 0.69916 (8) 0.0440 (3)
N4 0.45766 (11) 0.57194 (9) 0.63391 (6) 0.0257 (2)
N5 0.22860 (12) 0.68505 (9) 0.54874 (7) 0.0303 (3)
C1 0.31772 (15) 0.11347 (11) 0.46609 (8) 0.0293 (3)
C2 0.39626 (18) 0.11496 (14) 0.39956 (10) 0.0438 (4)
H2A 0.4877 0.1456 0.4026 0.053*
C3 0.3431 (2) 0.07249 (16) 0.32909 (10) 0.0550 (5)
H3 0.3981 0.0740 0.2842 0.066*
C4 0.2105 (2) 0.02797 (15) 0.32374 (10) 0.0480 (4)
H4 0.1741 −0.0014 0.2754 0.058*
C5 0.13109 (17) 0.02632 (13) 0.38883 (9) 0.0396 (4)
H5 0.0396 −0.0041 0.3853 0.047*
C6 0.18408 (16) 0.06887 (12) 0.45964 (9) 0.0341 (3)
H6 0.1283 0.0675 0.5042 0.041*
C7 0.38193 (15) 0.15738 (12) 0.54260 (9) 0.0343 (3)
H7A 0.4442 0.0993 0.5661 0.041*
H7B 0.4398 0.2236 0.5316 0.041*
C8 0.19589 (14) 0.28012 (11) 0.60124 (8) 0.0270 (3)
C9 0.11891 (17) 0.26208 (14) 0.66575 (9) 0.0376 (3)
H9 0.0500 0.3114 0.6842 0.045*
C10 0.19235 (14) 0.37276 (11) 0.54245 (7) 0.0262 (3)
H10A 0.0954 0.3825 0.5214 0.031*
H10B 0.2503 0.3515 0.4983 0.031*
C11 0.40317 (13) 0.48442 (10) 0.59142 (7) 0.0237 (3)
C12 0.24519 (13) 0.48458 (11) 0.57649 (7) 0.0238 (3)
H12 0.1999 0.4983 0.6272 0.029*
C13 0.20750 (13) 0.58015 (11) 0.52044 (8) 0.0260 (3)
C14 0.26507 (14) 0.70923 (11) 0.62872 (8) 0.0285 (3)
C15 0.19149 (16) 0.79278 (12) 0.66644 (10) 0.0406 (4)
H15 0.1132 0.8267 0.6401 0.049*
C16 0.23055 (17) 0.82671 (13) 0.74123 (10) 0.0458 (4)
H16 0.1806 0.8847 0.7657 0.055*
C17 0.34254 (18) 0.77633 (14) 0.78060 (9) 0.0429 (4)
H17 0.3707 0.8005 0.8319 0.052*
C18 0.41355 (16) 0.69081 (12) 0.74538 (8) 0.0342 (3)
H18 0.4889 0.6551 0.7733 0.041*
C19 0.37605 (14) 0.65595 (11) 0.66908 (7) 0.0262 (3)
C20 0.60870 (14) 0.57233 (12) 0.65173 (9) 0.0326 (3)
H20A 0.6558 0.5310 0.6110 0.049*
H20B 0.6285 0.5366 0.7026 0.049*
H20C 0.6427 0.6497 0.6535 0.049*
C21 0.19423 (18) 0.77880 (13) 0.49550 (10) 0.0433 (4)
H21A 0.2198 0.7593 0.4423 0.065*
H21B 0.2461 0.8455 0.5131 0.065*
H21C 0.0939 0.7940 0.4957 0.065*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0280 (5) 0.0271 (5) 0.0357 (5) 0.0058 (4) 0.0003 (4) −0.0025 (4)
O2 0.0347 (6) 0.0368 (6) 0.0290 (5) 0.0067 (4) −0.0072 (4) −0.0011 (4)
O1W 0.0327 (7) 0.0899 (11) 0.0629 (8) −0.0016 (7) 0.0039 (6) −0.0415 (8)
N1 0.0340 (7) 0.0267 (6) 0.0289 (6) 0.0004 (5) −0.0036 (5) 0.0020 (5)
N2 0.0487 (8) 0.0347 (7) 0.0357 (6) −0.0049 (6) −0.0073 (6) 0.0083 (6)
N3 0.0497 (9) 0.0464 (8) 0.0356 (7) −0.0104 (7) −0.0001 (6) 0.0081 (6)
N4 0.0225 (6) 0.0286 (6) 0.0257 (5) 0.0015 (4) −0.0009 (4) −0.0022 (5)
N5 0.0319 (6) 0.0249 (6) 0.0336 (6) 0.0048 (5) −0.0035 (5) 0.0013 (5)
C1 0.0335 (8) 0.0185 (6) 0.0359 (7) 0.0047 (5) 0.0022 (6) 0.0012 (5)
C2 0.0440 (10) 0.0384 (9) 0.0498 (9) −0.0047 (7) 0.0128 (7) −0.0010 (7)
C3 0.0680 (13) 0.0574 (11) 0.0410 (9) −0.0038 (9) 0.0197 (9) −0.0051 (8)
C4 0.0634 (12) 0.0453 (10) 0.0348 (8) 0.0042 (8) −0.0030 (8) −0.0043 (7)
C5 0.0391 (9) 0.0356 (8) 0.0434 (8) 0.0008 (7) −0.0051 (7) −0.0024 (7)
C6 0.0359 (8) 0.0315 (7) 0.0352 (7) 0.0013 (6) 0.0034 (6) 0.0009 (6)
C7 0.0305 (8) 0.0281 (7) 0.0440 (8) 0.0059 (6) −0.0021 (6) −0.0030 (6)
C8 0.0267 (7) 0.0259 (7) 0.0281 (6) −0.0022 (5) −0.0019 (5) −0.0035 (5)
C9 0.0380 (8) 0.0407 (8) 0.0343 (7) −0.0040 (7) 0.0036 (6) 0.0006 (7)
C10 0.0256 (7) 0.0259 (6) 0.0267 (6) 0.0005 (5) −0.0019 (5) −0.0018 (5)
C11 0.0265 (7) 0.0238 (6) 0.0206 (6) 0.0020 (5) −0.0001 (5) 0.0026 (5)
C12 0.0230 (6) 0.0252 (6) 0.0233 (6) 0.0024 (5) 0.0005 (5) −0.0012 (5)
C13 0.0209 (6) 0.0279 (7) 0.0291 (6) 0.0043 (5) 0.0001 (5) −0.0008 (5)
C14 0.0276 (7) 0.0232 (6) 0.0350 (7) −0.0022 (5) 0.0027 (5) −0.0035 (5)
C15 0.0317 (8) 0.0308 (8) 0.0592 (10) 0.0033 (6) 0.0016 (7) −0.0127 (7)
C16 0.0397 (9) 0.0375 (9) 0.0612 (10) −0.0042 (7) 0.0145 (8) −0.0241 (8)
C17 0.0465 (10) 0.0447 (9) 0.0382 (8) −0.0120 (8) 0.0092 (7) −0.0174 (7)
C18 0.0367 (8) 0.0355 (8) 0.0303 (7) −0.0053 (6) 0.0009 (6) −0.0045 (6)
C19 0.0262 (7) 0.0250 (6) 0.0278 (6) −0.0028 (5) 0.0049 (5) −0.0032 (5)
C20 0.0246 (7) 0.0345 (8) 0.0384 (7) 0.0003 (6) −0.0031 (6) −0.0033 (6)
C21 0.0497 (10) 0.0293 (8) 0.0497 (9) 0.0043 (7) −0.0098 (7) 0.0087 (7)

Geometric parameters (Å, °)

O1—C11 1.2263 (15) C7—H7A 0.9900
O2—C13 1.2283 (15) C7—H7B 0.9900
O1W—H1 0.85 (1) C8—C9 1.371 (2)
O1W—H2 0.85 (1) C8—C10 1.4942 (18)
N1—N2 1.3511 (16) C9—H9 0.9500
N1—C8 1.3576 (17) C10—C12 1.5346 (18)
N1—C7 1.4591 (19) C10—H10A 0.9900
N2—N3 1.314 (2) C10—H10B 0.9900
N3—C9 1.354 (2) C11—C12 1.5269 (18)
N4—C11 1.3642 (16) C12—C13 1.5237 (18)
N4—C19 1.4227 (17) C12—H12 1.0000
N4—C20 1.4685 (17) C14—C15 1.3968 (19)
N5—C13 1.3556 (17) C14—C19 1.3970 (19)
N5—C14 1.4252 (17) C15—C16 1.377 (2)
N5—C21 1.4714 (18) C15—H15 0.9500
C1—C6 1.389 (2) C16—C17 1.381 (3)
C1—C2 1.392 (2) C16—H16 0.9500
C1—C7 1.5142 (19) C17—C18 1.381 (2)
C2—C3 1.383 (2) C17—H17 0.9500
C2—H2A 0.9500 C18—C19 1.4006 (18)
C3—C4 1.379 (3) C18—H18 0.9500
C3—H3 0.9500 C20—H20A 0.9800
C4—C5 1.376 (2) C20—H20B 0.9800
C4—H4 0.9500 C20—H20C 0.9800
C5—C6 1.388 (2) C21—H21A 0.9800
C5—H5 0.9500 C21—H21B 0.9800
C6—H6 0.9500 C21—H21C 0.9800
H1—O1W—H2 110 (2) C8—C10—H10B 109.0
N2—N1—C8 111.33 (12) C12—C10—H10B 109.0
N2—N1—C7 118.92 (12) H10A—C10—H10B 107.8
C8—N1—C7 129.70 (12) O1—C11—N4 122.22 (12)
N3—N2—N1 106.85 (12) O1—C11—C12 121.50 (11)
N2—N3—C9 108.83 (12) N4—C11—C12 116.28 (11)
C11—N4—C19 124.08 (11) C13—C12—C11 108.21 (10)
C11—N4—C20 117.69 (11) C13—C12—C10 110.43 (10)
C19—N4—C20 117.86 (11) C11—C12—C10 111.81 (10)
C13—N5—C14 123.78 (11) C13—C12—H12 108.8
C13—N5—C21 117.24 (11) C11—C12—H12 108.8
C14—N5—C21 118.51 (11) C10—C12—H12 108.8
C6—C1—C2 118.15 (14) O2—C13—N5 121.46 (12)
C6—C1—C7 122.74 (13) O2—C13—C12 122.34 (12)
C2—C1—C7 119.09 (13) N5—C13—C12 116.19 (11)
C3—C2—C1 120.93 (16) C15—C14—C19 119.22 (13)
C3—C2—H2A 119.5 C15—C14—N5 118.65 (13)
C1—C2—H2A 119.5 C19—C14—N5 122.05 (12)
C4—C3—C2 120.21 (16) C16—C15—C14 121.08 (15)
C4—C3—H3 119.9 C16—C15—H15 119.5
C2—C3—H3 119.9 C14—C15—H15 119.5
C5—C4—C3 119.64 (16) C15—C16—C17 119.87 (14)
C5—C4—H4 120.2 C15—C16—H16 120.1
C3—C4—H4 120.2 C17—C16—H16 120.1
C4—C5—C6 120.30 (16) C16—C17—C18 119.93 (14)
C4—C5—H5 119.8 C16—C17—H17 120.0
C6—C5—H5 119.8 C18—C17—H17 120.0
C5—C6—C1 120.76 (14) C17—C18—C19 120.94 (14)
C5—C6—H6 119.6 C17—C18—H18 119.5
C1—C6—H6 119.6 C19—C18—H18 119.5
N1—C7—C1 113.52 (12) C14—C19—C18 118.89 (13)
N1—C7—H7A 108.9 C14—C19—N4 122.37 (11)
C1—C7—H7A 108.9 C18—C19—N4 118.64 (12)
N1—C7—H7B 108.9 N4—C20—H20A 109.5
C1—C7—H7B 108.9 N4—C20—H20B 109.5
H7A—C7—H7B 107.7 H20A—C20—H20B 109.5
N1—C8—C9 103.48 (12) N4—C20—H20C 109.5
N1—C8—C10 125.18 (12) H20A—C20—H20C 109.5
C9—C8—C10 131.30 (13) H20B—C20—H20C 109.5
N3—C9—C8 109.50 (14) N5—C21—H21A 109.5
N3—C9—H9 125.2 N5—C21—H21B 109.5
C8—C9—H9 125.2 H21A—C21—H21B 109.5
C8—C10—C12 113.14 (10) N5—C21—H21C 109.5
C8—C10—H10A 109.0 H21A—C21—H21C 109.5
C12—C10—H10A 109.0 H21B—C21—H21C 109.5
C8—N1—N2—N3 −0.75 (15) N4—C11—C12—C10 −169.06 (10)
C7—N1—N2—N3 −178.41 (12) C8—C10—C12—C13 −166.63 (11)
N1—N2—N3—C9 0.48 (16) C8—C10—C12—C11 72.82 (14)
C6—C1—C2—C3 −0.4 (2) C14—N5—C13—O2 172.36 (12)
C7—C1—C2—C3 178.00 (15) C21—N5—C13—O2 0.4 (2)
C1—C2—C3—C4 0.1 (3) C14—N5—C13—C12 −8.58 (19)
C2—C3—C4—C5 0.2 (3) C21—N5—C13—C12 179.44 (12)
C3—C4—C5—C6 −0.2 (3) C11—C12—C13—O2 111.69 (14)
C4—C5—C6—C1 −0.1 (2) C10—C12—C13—O2 −10.99 (18)
C2—C1—C6—C5 0.5 (2) C11—C12—C13—N5 −67.36 (14)
C7—C1—C6—C5 −177.93 (13) C10—C12—C13—N5 169.96 (11)
N2—N1—C7—C1 101.20 (14) C13—N5—C14—C15 −132.02 (15)
C8—N1—C7—C1 −75.96 (18) C21—N5—C14—C15 39.86 (19)
C6—C1—C7—N1 −22.18 (19) C13—N5—C14—C19 51.2 (2)
C2—C1—C7—N1 159.45 (13) C21—N5—C14—C19 −136.95 (14)
N2—N1—C8—C9 0.69 (15) C19—C14—C15—C16 2.9 (2)
C7—N1—C8—C9 178.03 (13) N5—C14—C15—C16 −173.96 (14)
N2—N1—C8—C10 −177.24 (12) C14—C15—C16—C17 −1.2 (3)
C7—N1—C8—C10 0.1 (2) C15—C16—C17—C18 −1.1 (2)
N2—N3—C9—C8 −0.06 (17) C16—C17—C18—C19 1.7 (2)
N1—C8—C9—N3 −0.38 (16) C15—C14—C19—C18 −2.3 (2)
C10—C8—C9—N3 177.37 (13) N5—C14—C19—C18 174.49 (12)
N1—C8—C10—C12 −113.56 (14) C15—C14—C19—N4 −178.56 (13)
C9—C8—C10—C12 69.12 (19) N5—C14—C19—N4 −1.8 (2)
C19—N4—C11—O1 −175.58 (12) C17—C18—C19—C14 0.0 (2)
C20—N4—C11—O1 −2.71 (18) C17—C18—C19—N4 176.42 (13)
C19—N4—C11—C12 5.01 (17) C11—N4—C19—C14 −46.74 (18)
C20—N4—C11—C12 177.88 (11) C20—N4—C19—C14 140.41 (13)
O1—C11—C12—C13 −110.30 (13) C11—N4—C19—C18 137.00 (13)
N4—C11—C12—C13 69.11 (14) C20—N4—C19—C18 −35.85 (17)
O1—C11—C12—C10 11.53 (16)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1W—H1···O2 0.85 (1) 2.02 (1) 2.836 (2) 161 (2)
O1W—H2···N3i 0.85 (1) 2.10 (1) 2.937 (2) 170 (2)

Symmetry codes: (i) x, −y+1/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5193).

References

  1. Barbour, L. J. (2001). J. Supramol. Chem.1, 189–191.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810005325/bt5193sup1.cif

e-66-0o633-sup1.cif (21.3KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810005325/bt5193Isup2.hkl

e-66-0o633-Isup2.hkl (228.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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