Abstract
The title compound, C14H13N3O3, was synthesized by the condensation reaction of 2-hydroxy-4-methoxybenzaldehyde with isonicotinohydrazide in a methanol solution. The molecule of the compound displays a trans configuration with respect to the C=N and C—N bonds. The dihedral angle between the benzene and the pyridine rings is 27.3 (2)°. In the crystal, molecules are linked by N—H⋯N interactions into zigzag chains with graph-set notation C(7) along [010]. An intramolecular O—H⋯N hydrogen bond is observed.
Related literature
For Schiff base compounds, see: Fan et al. (2007 ▶); Kim et al. (2005 ▶); Nimitsiriwat et al. (2004 ▶). For their biological activity, see: Chen et al. (1997 ▶); Ren et al. (2002 ▶). For related structures, see: Mohd Lair et al. (2009 ▶); Fun et al. (2008 ▶); Yang (2008 ▶); Zhi (2008 ▶, 2009 ▶); Zhi & Yang (2007 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).
Experimental
Crystal data
C14H13N3O3
M r = 271.27
Monoclinic,
a = 8.4704 (11) Å
b = 10.6866 (15) Å
c = 14.848 (2) Å
β = 104.929 (5)°
V = 1298.7 (3) Å3
Z = 4
Mo Kα radiation
μ = 0.10 mm−1
T = 298 K
0.17 × 0.15 × 0.15 mm
Data collection
Bruker SMART 1000 CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.983, T max = 0.985
7591 measured reflections
2814 independent reflections
2148 reflections with I > 2σ(I)
R int = 0.021
Refinement
R[F 2 > 2σ(F 2)] = 0.040
wR(F 2) = 0.107
S = 1.05
2814 reflections
186 parameters
1 restraint
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.15 e Å−3
Δρmin = −0.17 e Å−3
Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810010020/bx2271sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810010020/bx2271Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2⋯N3i | 0.90 (1) | 2.22 (1) | 3.1000 (17) | 169 (2) |
| O1—H1⋯N1 | 0.82 | 1.85 | 2.5720 (15) | 146 |
Symmetry code: (i)
.
Acknowledgments
Financial support from the Third Affiliated Hospital of Suzhou University is acknowledged.
supplementary crystallographic information
Comment
Considerable interest has been focused on the Schiff base compounds (Fan et al., 2007; Kim et al., 2005; Nimitsiriwat et al., 2004). Some of the compounds have been found to have excellent pharmacological and antibacterial activity (Chen et al., 1997; Ren et al., 2002). we report here, the crystal structure of the title new Schiff base compound, Fig. 1, derived from the condensation reaction of 2-hydroxy-4-methoxybenzaldehyde with isonicotinohydrazide is reported. The molecular structure of the title compound displays a trans configuration with respect to the C═N and C–N bonds. There is an intramolecular O—H···N hydrogen bond in the molecule. The dihedral angle between the benzene ring and the pyridine ring is 27.3 (2)°. All the bond lengths are within normal ranges and comparable to those in other similar compounds (Mohd Lair et al., 2009; Fun et al., 2008; Yang, 2008; Zhi, 2008; Zhi & Yang, 2007; Zhi, 2009). In the crystal, molecules are linked by interactions N—H···N into zigzag chains with graph-set notation C(7) along [010] (Bernstein, et al., 1995 ). An intramolecular O—H···N hydrogen bond is observed. (Table 1 and Fig. 2).
Experimental
2-Hydroxy-4-methoxybenzaldehyde (0.01 mol, 1.52 g) and isonicotinohydrazide (0.01 mol, 1.37 g) were dissolved in a methanol solution (50 ml). The mixture was stirred at room temperature to give a clear colorless solution. Crystals of the title compound were formed by gradual evaporation of the solvent for a week at room temperature.
Refinement
H2 atom was located in a difference map and refined with N–H distance restrained to 0.90 (1) Å. All other H atoms were positioned geometrically [C–H = 0.93-0.96 Å, O–H = 0.82 Å] and refined using a riding model, with Uiso(H) = 1.2Ueq(C) and 1.5Ueq(O1 and C14).
Figures
Fig. 1.
The structure of the title compound at the 30% probability level. Intramolecular O—H···N hydrogen bond is shown as a dashed line.
Fig. 2.
Molecular packing of the title compound, viewed along the a axis. Intermolecular hydrogen bonds are shown as dashed lines.
Crystal data
| C14H13N3O3 | F(000) = 568 |
| Mr = 271.27 | Dx = 1.387 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| a = 8.4704 (11) Å | Cell parameters from 2534 reflections |
| b = 10.6866 (15) Å | θ = 2.4–29.9° |
| c = 14.848 (2) Å | µ = 0.10 mm−1 |
| β = 104.929 (5)° | T = 298 K |
| V = 1298.7 (3) Å3 | Block, colourless |
| Z = 4 | 0.17 × 0.15 × 0.15 mm |
Data collection
| Bruker SMART 1000 CCD area-detector diffractometer | 2814 independent reflections |
| Radiation source: fine-focus sealed tube | 2148 reflections with I > 2σ(I) |
| graphite | Rint = 0.021 |
| ω scans | θmax = 27.0°, θmin = 2.4° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −9→10 |
| Tmin = 0.983, Tmax = 0.985 | k = −11→13 |
| 7591 measured reflections | l = −18→14 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.107 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.05 | w = 1/[σ2(Fo2) + (0.0491P)2 + 0.2097P] where P = (Fo2 + 2Fc2)/3 |
| 2814 reflections | (Δ/σ)max < 0.001 |
| 186 parameters | Δρmax = 0.15 e Å−3 |
| 1 restraint | Δρmin = −0.17 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.10385 (14) | 0.87232 (11) | 0.12848 (8) | 0.0425 (3) | |
| N2 | 0.01859 (14) | 0.78408 (11) | 0.16392 (8) | 0.0422 (3) | |
| N3 | −0.26459 (16) | 0.40486 (11) | 0.24523 (9) | 0.0491 (3) | |
| O1 | 0.28189 (15) | 0.93517 (9) | 0.01927 (8) | 0.0554 (3) | |
| H1 | 0.2284 | 0.8881 | 0.0436 | 0.083* | |
| O2 | 0.12526 (15) | 0.62775 (10) | 0.09488 (9) | 0.0624 (3) | |
| O3 | 0.40498 (14) | 1.36738 (9) | 0.00218 (8) | 0.0550 (3) | |
| C1 | 0.17894 (16) | 1.08276 (12) | 0.11284 (10) | 0.0404 (3) | |
| C2 | 0.26792 (16) | 1.05413 (12) | 0.04800 (9) | 0.0386 (3) | |
| C3 | 0.34625 (17) | 1.14692 (12) | 0.01077 (10) | 0.0410 (3) | |
| H3 | 0.4072 | 1.1263 | −0.0310 | 0.049* | |
| C4 | 0.33345 (17) | 1.27035 (12) | 0.03599 (10) | 0.0421 (3) | |
| C5 | 0.24469 (19) | 1.30187 (14) | 0.09935 (12) | 0.0518 (4) | |
| H5 | 0.2356 | 1.3850 | 0.1159 | 0.062* | |
| C6 | 0.17066 (19) | 1.20882 (14) | 0.13711 (11) | 0.0512 (4) | |
| H6 | 0.1129 | 1.2301 | 0.1803 | 0.061* | |
| C7 | 0.09706 (17) | 0.98671 (13) | 0.15257 (10) | 0.0446 (3) | |
| H7 | 0.0393 | 1.0082 | 0.1958 | 0.054* | |
| C8 | 0.03539 (16) | 0.66264 (13) | 0.14180 (9) | 0.0410 (3) | |
| C9 | −0.06727 (16) | 0.57305 (12) | 0.17959 (9) | 0.0365 (3) | |
| C10 | −0.12509 (18) | 0.46540 (13) | 0.13050 (10) | 0.0437 (3) | |
| H10 | −0.0990 | 0.4472 | 0.0748 | 0.052* | |
| C11 | −0.22227 (19) | 0.38542 (14) | 0.16569 (11) | 0.0493 (4) | |
| H11 | −0.2607 | 0.3135 | 0.1319 | 0.059* | |
| C12 | −0.20463 (18) | 0.50811 (13) | 0.29267 (10) | 0.0454 (3) | |
| H12 | −0.2304 | 0.5231 | 0.3489 | 0.054* | |
| C13 | −0.10710 (17) | 0.59344 (12) | 0.26321 (9) | 0.0395 (3) | |
| H13 | −0.0684 | 0.6638 | 0.2989 | 0.047* | |
| C14 | 0.4899 (2) | 1.34231 (15) | −0.06713 (12) | 0.0585 (4) | |
| H14A | 0.5817 | 1.2890 | −0.0415 | 0.088* | |
| H14B | 0.5276 | 1.4196 | −0.0873 | 0.088* | |
| H14C | 0.4177 | 1.3015 | −0.1193 | 0.088* | |
| H2 | −0.0540 (19) | 0.8096 (18) | 0.1945 (12) | 0.080* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0453 (7) | 0.0384 (6) | 0.0492 (7) | −0.0015 (5) | 0.0219 (5) | 0.0052 (5) |
| N2 | 0.0459 (7) | 0.0376 (6) | 0.0506 (7) | −0.0014 (5) | 0.0261 (5) | 0.0030 (5) |
| N3 | 0.0577 (8) | 0.0419 (7) | 0.0544 (7) | −0.0031 (6) | 0.0266 (6) | 0.0045 (6) |
| O1 | 0.0798 (8) | 0.0316 (5) | 0.0704 (7) | −0.0041 (5) | 0.0477 (6) | −0.0036 (5) |
| O2 | 0.0732 (7) | 0.0502 (6) | 0.0831 (8) | −0.0044 (5) | 0.0549 (7) | −0.0083 (6) |
| O3 | 0.0653 (7) | 0.0335 (5) | 0.0721 (7) | −0.0032 (5) | 0.0281 (6) | 0.0067 (5) |
| C1 | 0.0385 (7) | 0.0357 (7) | 0.0496 (8) | 0.0020 (6) | 0.0161 (6) | 0.0012 (6) |
| C2 | 0.0426 (7) | 0.0323 (7) | 0.0424 (7) | 0.0012 (5) | 0.0135 (6) | 0.0006 (6) |
| C3 | 0.0459 (7) | 0.0371 (7) | 0.0429 (7) | 0.0003 (6) | 0.0167 (6) | 0.0019 (6) |
| C4 | 0.0420 (7) | 0.0330 (7) | 0.0497 (8) | 0.0006 (6) | 0.0091 (6) | 0.0053 (6) |
| C5 | 0.0568 (9) | 0.0310 (7) | 0.0722 (10) | 0.0026 (6) | 0.0247 (8) | −0.0039 (7) |
| C6 | 0.0523 (9) | 0.0426 (8) | 0.0665 (10) | 0.0040 (6) | 0.0294 (8) | −0.0051 (7) |
| C7 | 0.0439 (8) | 0.0442 (8) | 0.0516 (8) | 0.0013 (6) | 0.0230 (7) | 0.0001 (6) |
| C8 | 0.0429 (7) | 0.0412 (8) | 0.0436 (7) | 0.0006 (6) | 0.0198 (6) | 0.0002 (6) |
| C9 | 0.0361 (7) | 0.0347 (7) | 0.0416 (7) | 0.0045 (5) | 0.0155 (6) | 0.0028 (5) |
| C10 | 0.0521 (8) | 0.0404 (7) | 0.0445 (8) | 0.0008 (6) | 0.0231 (7) | −0.0031 (6) |
| C11 | 0.0574 (9) | 0.0406 (8) | 0.0541 (9) | −0.0066 (7) | 0.0217 (7) | −0.0048 (7) |
| C12 | 0.0557 (9) | 0.0456 (8) | 0.0408 (8) | 0.0036 (7) | 0.0231 (7) | 0.0041 (6) |
| C13 | 0.0461 (8) | 0.0366 (7) | 0.0380 (7) | 0.0019 (6) | 0.0148 (6) | −0.0003 (6) |
| C14 | 0.0664 (10) | 0.0444 (9) | 0.0713 (11) | −0.0039 (7) | 0.0301 (9) | 0.0107 (8) |
Geometric parameters (Å, °)
| N1—C7 | 1.2791 (18) | C4—C5 | 1.388 (2) |
| N1—N2 | 1.3724 (15) | C5—C6 | 1.370 (2) |
| N2—C8 | 1.3552 (18) | C5—H5 | 0.9300 |
| N2—H2 | 0.896 (9) | C6—H6 | 0.9300 |
| N3—C11 | 1.3358 (19) | C7—H7 | 0.9300 |
| N3—C12 | 1.3369 (19) | C8—C9 | 1.4963 (18) |
| O1—C2 | 1.3558 (16) | C9—C10 | 1.3823 (19) |
| O1—H1 | 0.8200 | C9—C13 | 1.3852 (18) |
| O2—C8 | 1.2153 (16) | C10—C11 | 1.379 (2) |
| O3—C4 | 1.3606 (16) | C10—H10 | 0.9300 |
| O3—C14 | 1.4247 (19) | C11—H11 | 0.9300 |
| C1—C6 | 1.401 (2) | C12—C13 | 1.3753 (19) |
| C1—C2 | 1.4009 (19) | C12—H12 | 0.9300 |
| C1—C7 | 1.4468 (19) | C13—H13 | 0.9300 |
| C2—C3 | 1.3849 (19) | C14—H14A | 0.9600 |
| C3—C4 | 1.3831 (19) | C14—H14B | 0.9600 |
| C3—H3 | 0.9300 | C14—H14C | 0.9600 |
| C7—N1—N2 | 118.91 (12) | N1—C7—H7 | 119.9 |
| C8—N2—N1 | 117.81 (11) | C1—C7—H7 | 119.9 |
| C8—N2—H2 | 122.9 (13) | O2—C8—N2 | 123.59 (13) |
| N1—N2—H2 | 118.9 (13) | O2—C8—C9 | 121.93 (13) |
| C11—N3—C12 | 116.24 (12) | N2—C8—C9 | 114.48 (11) |
| C2—O1—H1 | 109.5 | C10—C9—C13 | 117.94 (12) |
| C4—O3—C14 | 118.62 (11) | C10—C9—C8 | 119.73 (12) |
| C6—C1—C2 | 117.28 (13) | C13—C9—C8 | 122.33 (12) |
| C6—C1—C7 | 121.09 (13) | C11—C10—C9 | 118.74 (13) |
| C2—C1—C7 | 121.63 (12) | C11—C10—H10 | 120.6 |
| O1—C2—C3 | 117.14 (12) | C9—C10—H10 | 120.6 |
| O1—C2—C1 | 121.81 (12) | N3—C11—C10 | 124.11 (14) |
| C3—C2—C1 | 121.05 (12) | N3—C11—H11 | 117.9 |
| C4—C3—C2 | 119.72 (13) | C10—C11—H11 | 117.9 |
| C4—C3—H3 | 120.1 | N3—C12—C13 | 123.88 (13) |
| C2—C3—H3 | 120.1 | N3—C12—H12 | 118.1 |
| O3—C4—C3 | 123.60 (13) | C13—C12—H12 | 118.1 |
| O3—C4—C5 | 115.81 (12) | C12—C13—C9 | 119.06 (13) |
| C3—C4—C5 | 120.58 (13) | C12—C13—H13 | 120.5 |
| C6—C5—C4 | 119.07 (13) | C9—C13—H13 | 120.5 |
| C6—C5—H5 | 120.5 | O3—C14—H14A | 109.5 |
| C4—C5—H5 | 120.5 | O3—C14—H14B | 109.5 |
| C5—C6—C1 | 122.28 (14) | H14A—C14—H14B | 109.5 |
| C5—C6—H6 | 118.9 | O3—C14—H14C | 109.5 |
| C1—C6—H6 | 118.9 | H14A—C14—H14C | 109.5 |
| N1—C7—C1 | 120.22 (13) | H14B—C14—H14C | 109.5 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2···N3i | 0.90 (1) | 2.22 (1) | 3.1000 (17) | 169 (2) |
| O1—H1···N1 | 0.82 | 1.85 | 2.5720 (15) | 146 |
Symmetry codes: (i) −x−1/2, y+1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BX2271).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810010020/bx2271sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810010020/bx2271Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


