Abstract
Glutamine plays a key role in intestinal growth and maintenance of gut function, and as we have shown protects the postischemic gut (Kozar RA, Scultz SG, Bick RJ, Poindexter BJ, Desoigne R, Weisbrodt NW, Haber MM, Moore FA. Shock 21: 433–437, 2004). However, the precise mechanisms of the gut protective effects of glutamine have not been well elucidated. In the present study, RNA microarray was performed to obtain differentially expressed genes in intestinal epithelial IEC-6 cells following either 2 mM or 10 mM glutamine. The result demonstrated that specificity protein 3 (Sp3) mRNA expression was downregulated 3.1-fold. PCR and Western blot confirmed that Sp3 expression was decreased by glutamine in a time- and dose-dependent fashion. To investigate the role of Sp3, Sp3 gene siRNA silencing was performed and apoptosis was assessed. Silencing of Sp3 demonstrated a significant increase in Bcl-2 and decrease in Bax protein expression, as well as a decrease in caspase-3, -8, and -9 protein expression and activity. The protein expression of apoptosis-related proteins after hypoxia/reoxygenation was similar to that of normoxia and correlated with a decrease in DNA fragmentation. Importantly, the addition of glutamine to Sp3-silenced cells did not further lessen apoptosis, suggesting that Sp3 plays a major role in the inhibitory effect of glutamine on apoptosis. This novel finding may explain in part the gut-protective effects of glutamine.
Keywords: Bcl-2, Bax, caspase, DNA fragmentation, hypoxia/reoxygenation, specificity protein 3
glutamine is involved in many processes vital to cell function and integrity. It is the most abundant free amino acid in the body and is involved in metabolic and biochemical processes in a number of organs and cell types, including the gut (29), where it plays an essential role in promoting and maintaining epithelial cell function (65). Glutamine has protective effects on intestinal mucosa by decreasing bacteremia and epithelial cell apoptosis (15, 31), enhancing gut barrier function (8, 45, 46, 47), and influencing gut immune response (9, 18). We and others have shown that enteral glutamine possesses protective effects to the postischemic gut (25, 26, 51). With the use of a rodent model of gut ischemia/reperfusion, glutamine preserved mucosal integrity, absorptive capacity, ATP, and the actin cytoskeleton of intestinal villi, which is key to maintaining gut barrier function (25, 26). Glutamine was also reported to exert a protective effect on the gut in rodent models of lipopolysaccharide and endotoxin (33, 59).
Specificity proteins (Sp) are a family of highly conserved zinc-finger transcription factors that bind to GC-rich consensus elements (43). Nine Sp proteins have been discovered, among which Sp1-Sp4 are the best-studied members (63). Among these Sp proteins, Sp1 and Sp3 are structurally similar and are known to interact with other proteins that help with their recruitment or stabilization of their DNA binding to activate or repress the expression of target genes (28, 44, 54, 56, 62). Sp3, specifically, has one long isoform and two short isoforms, which are products of differential translational initiation (32). Sp3 overexpression induces apoptosis in colon cancer cells (14, 58). It has also been identified as a marker of tumor aggressiveness and inducer of apoptosis via the caspase pathway in a number of tumor cell lines (14).
The aim of the present study was to further understand how glutamine protects intestinal epithelial cells. We performed microarray analysis of the small intestinal epithelial cell line, IEC-6 cells, and identified for the first time that Sp3 was modulated by glutamine. Our data suggest that glutamine decreased apoptosis under normoxia and oxidant-stressed conditions, a process that is mediated by inhibition of Sp3.
MATERIALS AND METHODS
Cell line, chemicals, and reagents.
The rat small intestinal cell line (CRL-1592), IEC-6, was purchased from the American Type Culture Collection and was maintained in DMEM supplemented with 10% (vol/vol) heat-inactivated FBS and 2 mM glutamine. Cell viability before experimentation was 100%.
Antibodies against caspase-3 (catalog no. 9665) and -9 (catalog no. 9508), phospho-Bad (Ser112) (catalog no. 5284), Bad (catalog no. 5292), Bax (catalog no. 2772), Bim (catalog no. 2819), Bok (catalog no. 4521), and β-actin (catalog no. 4967) were from Cell Signaling Technology (Danvers, MA). Antibody against caspase-8 (catalog no. ab15552) was obtained from Abcam (Cambridge, MA). Antibodies against Bcl-2 (catalog no. sc-783), Bid (catalog no. sc-11423), natural born killer (Bik) (catalog no. sc-30552), Sp1 (catalog no. sc-14027), and Sp3 (catalog no. sc-664) were from Santa Cruz Biotechnology (Santa Cruz, CA). Caspase-3/CPP32 Fluorometric Assay Kit (catalog no. K105-100), Caspase-8/FLICE Fluorometric Assay Kit (catalog no. K112-100), Caspase-9 Fluorometric Assay Kit (catalog no. K118-100), and Nuclear/Cytosol Fractionation Kit (catalog no. K266-100) were bought from BioVision Research Products (Mountain View, CA). Cycloheximide (CHX) (catalog no. 01810-1G) was ordered from Sigma-Aldrich (St. Louis, MO). Recombinant rat TNF (catalog no. 555109) was from BD Biosciences (Franklin Lakes, NJ). Cell Death Detection ELISAPLUS (catalog no. 11774425001) was from Roche Diagnostics (Indianapolis, IN). Silencer siRNA Starter Kit (catalog no. AM1640) was from Ambion (Austin, TX). Enhanced chemiluminescence (ECL) anti-rabbit IgG, horseradish peroxidase-linked whole antibody (from donkey) (catalog no. NA9340V), ECL anti-mouse IgG, horseradish peroxidase-linked whole antibody (from sheep) (catalog no. NA931V), and ECL plus Western blotting detection system (catalog no. RPN2132) were ordered from GE Healthcare (Piscataway, NJ).
Transcript profiling with Sentrix Beadchip Array.
The effects of various concentrations of glutamine have been studied in vitro and in vivo. Glutamine concentrations in vitro have been as high as 20 mM (22, 30, 40, 50), 40 mM (46), and even 80 mM (11). In our previous animal studies, glutamine was administered directly to small bowel IEC in concentrations ranging from 10 to 60 mM (25, 48, 51). Glutamine in commercially available enteral formulas is ∼60 mM and, when used as an isolated nutrient, can be as high as 500 mM. However, in the present study, the effects of 2 mM (basal concentration, as control) and 10 mM glutamine on IEC-6 cells were compared on the basis of previous studies that suggested that 2 mM and 10 mM glutamine cover the range of physiological and pharmacological concentrations in intestinal cells (12, 35, 36).
Confluent cells were incubated in serum-free media devoid of glutamine overnight and then treated with either 2 mM (basal concentration, as control) or 10 mM glutamine for 24 h under basal conditions. Cells were harvested and total RNA isolated using RNAzol Bee (Tel-Test, Friendswood, TX). The yield, purity, and integrity of the RNA samples were determined by spectrophotometry and electrophoresis. Three expression profiles (n = 3) for each experimental condition were generated. First-strand cDNA was synthesized, and in vitro transcription was then performed and biotinylated cRNA synthesized by amplification with dNTP mix containing biotin-dUTP and T7 RNA polymerase. An aliquot of 750 ng of amplified products were loaded onto Illumina Sentrix Beadchip Array Rat ref12-v1, hybridized at 58°C in an Illumina Hybridization Oven (catalog no. 198361; Illumina, San Diego, CA) for 17 h, washed, and incubated with straptavidin-Cy3 to detect biotin-labeled cRNA on the arrays. Arrays were dried and scanned with Bead Array Reader (Illumina). Data were analyzed using BeadStudio software (Illumina).
Quantitative real-time PCR.
Total RNA was prepared using Trizol (Invitrogen, Carlsbad, CA) and reverse transcribed using an iScript Select cDNA Synthesis Kit (Bio-Rad Laboratories, Hercules, CA) following the manufacturers' instruction. Primers for Sp3 (ID: Rn01485868_g1) and β-actin (ID: Rn00667869-m1) were obtained from Applied Biosystems (Austin, TX). Real-time PCR assays were performed in 96-well optical plates on an ABI Prism 7000 Sequence Detection System with SYBR Green PCR Master Mix (Applied Biosystems). Sp3 mRNA expression was normalized against that of β-actin. The value for control cells was set to 1, and the value for the various treatments was presented as a fraction of this number. Experiments were performed in triplicate.
RNA silencing of Sp3.
Interference transfections were performed when cells reached ∼70% confluence after 24 h of growth with the silencer siRNA Starter Kit according to the manufacturer's instructions. The Sp3 siRNA duplex oligonucleotide sense sequence was as follows: 5′-GUUCUCAGACAAUGACUGCUU-3′. The Ambion negative control siRNA no. 1 (catalog no. 4611; Ambion, Austin, TX) (scrambled siRNA) was used for negative control.
Western blot analysis.
To perform Western blot analysis, whole cell lysates were prepared by lysing cells with RIPA buffer (Sigma, Milwaukee, WI) containing protease inhibitors (Sigma), or according to the manufacturer's protocol nuclear and cytoplasmic protein fractions were extracted from cells using Nuclear/Cytosol Fractionation Kit. The whole cell lysates or nuclear proteins were electrophoresed on a Criterion precast gel (Bio-Rad Laboratories) and were then transferred onto a nitrocellulose membrane and blocked for 1 h in 5% nonfat dried milk in TBS with 0.1% Tween 20 and then incubated overnight at 4°C with the primary antibody. Membranes were then washed three times and incubated for 1 h at room temperature with ECL anti-rabbit IgG, horseradish peroxidase-linked whole antibody (from donkey), or ECL anti-mouse IgG, horseradish peroxidase-linked whole antibody (from sheep), developed with ECL plus Western blotting detection system.
Determination of caspase activation by fluorometric protease assay.
After siRNA transfection for 24 h, cells were grown in FBS-deprived medium overnight and then treated for 4 h with 20 ng/ml of TNF and 25 μg/ml of CHX (2), known inducers of apoptosis. Activities of caspases were then analyzed. Hypoxia/reoxygenation was used as model of oxidant stress. After incubation in FBS-deprived medium overnight, cells were incubated in a hypoxic chamber with 1% O2-5% CO2-94.5% N2 for 4 h and then cultured under normoxic conditions with 20 ng/ml of TNF and 25 μg/ml of CHX for an additional 4-h period. At the end of each treatment, activities of caspase-3, -8, and -9 were tested with caspase-3/CPP32 fluorometric assay kit, caspase-8/FLICE fluorometric assay kit, and caspase-9 fluorometric assay kit, respectively, according to the manufacturer's instructions. Briefly, cells were harvested and collected by centrifugation. The pelleted cells were lysed in lysis buffer. Lysates were incubated for 1 h at 37°C with the specific fluorescent substrate. Fluorescence derived from release of 7-amino-4-trifluoromethyl coumarin was followed using a spectrofluorometer at 400-nm excitation and 505-nm emission.
DNA fragmentation measurement.
After overnight incubation in FBS-free medium with or without 10 mM glutamine, untreated or siRNA-transfected cells were treated with 20 ng/ml of TNF and 25 μg/ml of CHX, for an additional 4-h period. For hypoxia/reoxygenation experiments, cells were incubated in a hypoxic chamber with 1% O2-5% CO2-94.5% N2 for 4 h, and cells were then cultured under normoxic conditions in presence of 20 ng/ml of TNF and 25 μg/ml of CHX for 4 h. The presence of cytoplasmic nucleosomes in cells was determined using a Cell Death Detection ELISA kit. The method is a quantitative sandwich enzyme immunoassay that uses antibodies directed against DNA and histone, respectively. Briefly, after treatment, floating cells were discarded, and the attached cells were washed twice with PBS and lysed according to the manufacturer's instructions. Then the mono- and oligonucleosomes in the cytoplasmic fraction of cell lysates were captured onto the ELISA plate, and the immunocomplex was detected photometrically at 405/490 nm in a microplate reader.
Data analysis.
All experiments were repeated at least three times. Statistical analysis was performed by unpaired Student's t-test or one-way ANOVA, and individual group means were compared using Tukey's multiple-group comparison test. P values <0.05 were considered significant. Data are expressed as means ± SE.
RESULTS
Microarray gene analysis.
Microarray analysis revealed that the mRNA expression levels of 38 genes were found upregulated or downregulated at least twofold after treatment with 10 mM compared with 2 mM glutamine under basal conditions (Fig. 1). Among these genes, the most differentially expressed genes were muc10 and olr1675, which were upregulated or downregulated 5.52- and 5.50-fold, respectively. The mRNA expression of Sp3 was downregulated 3.12-fold by glutamine. Sp3 belongs to the Sp family of transcription factors, which controls expression of genes implicated in a diverse range of cellular genes. There are to date no reports on the regulation of Sp3 by glutamine, thus prompting our further investigation.
Sp3 expression was regulated by glutamine.
Quantitative real-time PCR was employed to validate the microarray result. Consistent with the microarray results, quantitative real-time PCR confirmed that Sp3 mRNA expression was reduced by 3.6-fold after treatment of 10 mM glutamine for 24 h compared with control (Fig. 2A). Western blot analysis was performed to evaluate the protein expression of Sp3. After treatment with 10 mM glutamine under basal conditions, Sp3 protein expression was decreased (Fig. 2C). Moreover, dose-response and time-course experiments showed that treatment with 10 mM glutamine for 16 h produced maximal Sp3 repression in both mRNA (Fig. 2, A and B) and protein levels (Fig. 2, D and E). To examine whether these observations were also present after oxidant stress, experiments were repeated after hypoxia and reoxygenation and demonstrated that glutamine similarly downregulated Sp3 expression (Fig. 2E). Because Sp1 and Sp3 compete for common target sequences, expression of Sp1 was also measured. Glutamine had no effect on Sp1 expression under either normoxia or oxidant-stressed conditions (Fig. 2, C and F).
Apoptosis was reduced by inhibition of Sp3.
Sp3 has been shown to induce apoptosis, whereas glutamine may inhibit apoptosis (4, 14). We therefore hypothesized that a mechanism by which glutamine protects against intestinal apoptosis is via inhibition of Sp3. Small-interference RNA technology was used to silence Sp3 expression, and then quantitative real-time PCR performed to evaluate the efficiency of small RNA interference. Results demonstrated that mRNA expression of Sp3 was decreased by 82.9% after transfection of Sp3 siRNA for 48 h (Fig. 3A). Western blot revealed that Sp3 protein was reduced by Sp3 siRNA in the cytoplasm by 74.1% (Fig. 3B) and in the nucleus by 75.2% (Fig. 3C). However, Sp1 protein expression was not affected by Sp3 siRNA in either the cytoplasmic (Fig. 3B) or nuclear fractions (Fig. 3C). Under basal conditions, DNA fragmentation was similar between control and scrambled siRNA (5.01 ± 0.33 and 5.27 ± 0.63, respectively) but reduced by glutamine alone (control + glutamine; 3.79 ± 0.29) and scrambled siRNA plus glutamine (3.90 ± 0.39, respectively) (Fig. 4A). Silencing of Sp3 further reduced DNA fragmentation (2.49 ± 0.34). Similar results were observed when cells were subjected to hypoxia/reoxygenation (Fig. 4B). Importantly, the addition of glutamine to Sp3-silenced cells did not further lessen apoptosis under either basal or stressed conditions, suggesting that Sp3 plays a major role in the inhibitory effect of glutamine on apoptosis (Fig. 4, A and B).
Inhibition of Sp3 reduced caspase expression and activity.
Caspases are a class of cysteine proteases that play a pivotal role in the execution of apoptosis. Caspase-3 is a key executioner of apoptosis, whose activation is mediated by the initiator caspases, caspase-8 and caspase-9 (10, 27, 57). Therefore, we sought to determine whether these caspases contribute to the protective effect of glutamine on apoptosis. Activations of caspases-3, -8, and -9 in Sp3-silenced IEC-6 cells were analyzed by two different and distinct methods: immunoblotting for evaluation of procaspases and cleaved caspase expression levels and caspase fluorometric assays for analysis of enzyme activity. Immunoblotting revealed that the cleaved caspases-3, -8, and -9 were inhibited after silencing of Sp3 compared with those treated with scrambled siRNA after treatment with inducers of apoptosis, TNF and CHX (Fig. 5A). The results from the caspase fluorometric assay further confirmed these findings, with activities of caspase-8, -9, and -3 inhibited by Sp3 siRNA (Fig. 5B). A similar observation was observed after hypoxia and reoxygenation (Fig. 5C).
Bcl-2 family proteins were regulated by Sp3.
To further investigate the mechanisms by which Sp3 mediates apoptosis, Bcl-2 family protein expression was detected by Western blot. Under normoxia with 20 ng/ml of TNF and 25 μg/ml of CHX treatment for 4 h and after Sp3 silencing, prosurvival Bcl-2 protein expression was increased, whereas the proapoptotic protein, Bax, was inhibited. The expression levels of other Bcl-2 family proteins including Bad, Bik, Bim, Bid, and Bok remained unchanged (Fig. 6A). Similar to DNA fragmentation and caspases, results after hypoxia and reoxygenation followed those of normoxia (data not shown), except that expression of the proapoptotic protein, Bok, was decreased (Fig. 6B).
DISCUSSION
In this study, we utilized microarray technology and identified that glutamine is a novel mediator of Sp3 in IEC-6 cells, with an inverse relationship between glutamine concentration and Sp3 expression demonstrated. Because both glutamine and Sp3 have been linked to apoptosis (1, 41, 61), we hypothesized that a mechanism by which glutamine protects against intestinal apoptosis is via inhibition of Sp3.
Glutamine has been shown to be antiapoptotic in the intestine (4). Previous studies have shown that glutamine protects human intestinal HT-29 cells and rat intestinal IEC-18 cells from cytokine-induced apoptosis (15) and NH2Cl (61). Many different mechanisms have been proposed to explain the protective effects of glutamine against apoptosis. Glutamine can activate mammalian target of rapamycin signaling and increase the expression of ornithine decarboxylase to promote intestinal restitution (55). Evans et al. (16) demonstrated that glutamine prevented cytokine-induced apoptosis in intestinal epithelial HT-29 cells via the pyrimidine pathway. The protective effect of glutamine on gut mucosa may also be related to the induction of cytoprotective proteins, such as the heat shock protein family (7, 49, 59, 60).
More directly, glutamine can upregulate the expression of antiapoptotic proteins, Bcl-2 and CD45RO, and downregulate the expression of proapoptotic proteins, Fas and Fas ligand, in the human T lymphocyte cell line Jurkat (5). In addition, glutamine can inhibit both caspase-3 in intestine (13) and caspase-8 activities in activated T cells (5), whereas glutamine starvation induces apoptosis by caspase-3 and caspase-8 sequential activation (41). Indeed, our results demonstrate that, when Sp3 was silenced, both DNA fragmentation and caspase-3, -8, and -9 expression and activity were significantly inhibited. Importantly, the addition of glutamine to Sp3-silenced cells did not further lessen apoptosis, suggesting that Sp3 plays a major role in the inhibitory effect of glutamine on apoptosis.
The Bcl-2 family plays a central role in apoptosis. The family can be separated into several groups on the basis of function and sequence homology including the following: anti-apoptotic Bcl-2 family proteins Bcl-2, Bcl-w, Bcl-xL, A1, and Mcl-1; Bcl-2 family effector proteins Bak and Bax; direct activator BH3-only proteins Bid and Bim; and sensitizers/derepressors BH3-only proteins Bad, Bik, Bmf, Hrk, Noxa, and Puma (6). In the present study, we found that silencing of Sp3 increased Bcl-2 expression and decreased Bax expression under both normoxia and after hypoxia/reoxygenation, suggesting that the protection against apoptosis by Sp3 inhibition was through the caspase-mediated apoptosis pathway and mediated by apoptosis-related proteins. Chang et al. (5) reported that glutamine enhanced expression of Bcl-2 in the human T lymphocyte cell line Jurkat (5), suggesting that Sp3 may mediate the regulation of Bcl-2 by glutamine.
We also showed that Sp3 silencing after hypoxia/reoxygenation decreased Bok expression. Several studies have shown that oxygen-glucose deprivation/reoxygenation causes apoptosis and enhances the expressions of Bax, Bok, and caspase-3 in rat pheochromocytoma cells, PC12, and in retinal ganglion cells (24, 39, 53).
Although Sp1 and Sp3 are structurally similar, they can possess strikingly different functions (32). Sp1 is well known as a transcriptional activator, whereas Sp3 can be either a transcriptional activator or repressor of Sp1-mediated transcription (34). The difference in the position of the inhibitory domain between the two proteins is believed to be a major reason for the distinct functions (32, 52). We found that glutamine inhibited Sp3 but not Sp1. Sumoylation of transcription factors, including Sp3 but not Sp1, has negative effects on its activity and may represent the mechanism by which glutamine represses Sp3. There is a single lysine residue within the inhibitory domain that is the target for conjugation of the small ubiquitin-related posttranslational modifier (54).
The findings of this study may have important clinical implications. During times of glutamine depletion, such as critical illness or injury, Sp3 expression may go unchecked, leading to intestinal mucosal damage. Glutamine supplementation, however, may protect the postischemic gut by repressing Sp3 expression and inhibiting apoptosis. A number of laboratory studies have confirmed the gut-protective effects of enteral glutamine administered to the postischemic gut (26, 38). Additionally, clinical studies have demonstrated that enteral glutamine administered to trauma, burn, and critically ill patients decreases morbidity in most but not all studies (3, 17, 19, 23, 42, 64). We have shown that the early use of glutamine during active shock resuscitation is safe (37). Lastly, the REDOX trial includes enteral glutamine administration to critically ill patients in shock, and preliminary results appear promising (20, 21).
In conclusion, we identified for the first time that glutamine represses Sp3 expression. Our results suggest that Sp3 plays a major role in the inhibitory effect of glutamine on apoptosis under both normoxia and oxidant-stressed conditions in small bowel IEC.
GRANTS
This work was supported by National Institutes of Health (RO1 GM077282).
DISCLOSURES
No conflicts of interest, financial or otherwise, are declared by the authors.
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