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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Jun 26;66(Pt 7):o1774. doi: 10.1107/S1600536810023822

N-Benzyl­carbamothioyl-2-chloro­benzamide

Xi Zheng a, Bo Li a, Qiang Wang a, Li Guo a,*
PMCID: PMC3006700  PMID: 21587987

Abstract

In the title compound, C15H13ClN2OS, the dihedral angles between the sulfourea group and the benzene ring and the chloro­benzene ring are 35.8 (6) and 81.6 (6)° respectively. An intra­molecular N—H⋯O inter­action occurs. In the crystal, a combination of inter­molecular π–π stacking inter­actions [centroid–centroid distance = 4.0616 (16) Å] and N—H⋯S hydrogen bonds stabilizes the structure.

Related literature

For general background to the chemistry and biological activity of thio­urea derivatives and their use, see: Jain & Rao (2003); Zeng et al. (2003); Xu et al. (2004); Zheng et al. (2004); D’hooghe et al. (2005); Saeed et al. (2008, 2009, 2010).graphic file with name e-66-o1774-scheme1.jpg

Experimental

Crystal data

  • C15H13ClN2OS

  • M r = 304.78

  • Triclinic, Inline graphic

  • a = 7.347 (2) Å

  • b = 9.658 (3) Å

  • c = 11.003 (3) Å

  • α = 110.150 (5)°

  • β = 90.767 (3)°

  • γ = 104.058 (3)°

  • V = 707.0 (4) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.41 mm−1

  • T = 153 K

  • 0.40 × 0.30 × 0.30 mm

Data collection

  • Rigaku AFC10/Saturn724+ diffractometer

  • Absorption correction: multi-scan (ABSCOR; Higashi, 1995) T min = 0.852, T max = 0.886

  • 5691 measured reflections

  • 2481 independent reflections

  • 2194 reflections with I > 2σ(I)

  • R int = 0.017

Refinement

  • R[F 2 > 2σ(F 2)] = 0.029

  • wR(F 2) = 0.073

  • S = 1.01

  • 2481 reflections

  • 189 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.23 e Å−3

  • Δρmin = −0.18 e Å−3

Data collection: CrystalClear (Rigaku/MSC, 2005); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996); software used to prepare material for publication: PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810023822/pk2248sup1.cif

e-66-o1774-sup1.cif (18KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810023822/pk2248Isup2.hkl

e-66-o1774-Isup2.hkl (121.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1N⋯S1i 0.86 (2) 2.53 (2) 3.3698 (18) 166.2 (18)
N2—H2N⋯O1 0.82 (2) 2.01 (2) 2.669 (2) 137 (2)

Symmetry code: (i) Inline graphic.

Acknowledgments

We thank the Analytical and Testing Center of Sichuan University for the X-ray measurements.

supplementary crystallographic information

Comment

N-(benzylcarbamothioyl)-2-chlorobenzamide derivatives are of great importance owing to their wide-ranging biological properties (Zeng et al. (2003)). The title compound is one of the key intermediates in our synthetic investigations of antiviral drugs. We report here its crystal structure. As shown in Fig. 1, the dihedral angle of 35.8 (6)° and 81.6 (6)° between the connecting sulfourea unit and the benzene ring, and between the 2-chloro-benzene ring and the connecting sulfourea group, respectively. A combination of intermolecular π-π packing interaction, N—H···O and N—H···S hydrogen bonds help stabilize the structure. In addition, weak C—H···π interactions are also present.

Experimental

A solution of 0.23 g (3 mmol) of ammonium thiocyanate in 7 ml of acetonitrile was added to a solution of 0.52 g (3 mmol) of 2-chlorobenzoyl chloride in 2.5 ml of toluene. The mixture was heated for 5 min at 40°C and filtered from ammonium chloride, the filtrate was added to a solution of 0.32 g (3 mmol) of phenylmethanamine in 5 ml of acetonitrile, the mixture was stirred for 3 h at room temperature and evaporated, and the residue was washed with ethanol and recrystallized from ethanol. Yield 0.77 g (85%). Crystals suitable for X-ray analysis were obtained by slow evaporation from a solution of dichloromethane.

Refinement

Amine hydrogens were located in a difference map and refined freely. The reminaing H atoms were positioned geometrically (C—H = 0.93–0.97 Å) and refined using a riding model, with Uiso(H) = 1.2–1.5Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level.

Crystal data

C15H13ClN2OS Z = 2
Mr = 304.78 F(000) = 316
Triclinic, P1 Dx = 1.432 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.347 (2) Å Cell parameters from 2259 reflections
b = 9.658 (3) Å θ = 3.2–27.5°
c = 11.003 (3) Å µ = 0.41 mm1
α = 110.150 (5)° T = 153 K
β = 90.767 (3)° Block, colorless
γ = 104.058 (3)° 0.40 × 0.30 × 0.30 mm
V = 707.0 (4) Å3

Data collection

Rigaku AFC10/Saturn724+ diffractometer 2481 independent reflections
Radiation source: Rotating Anode 2194 reflections with I > 2σ(I)
graphite Rint = 0.017
Detector resolution: 28.6 pixels mm-1 θmax = 25.3°, θmin = 3.2°
φ and ω scans h = −8→8
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) k = −11→11
Tmin = 0.852, Tmax = 0.886 l = −13→13
5691 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.073 H atoms treated by a mixture of independent and constrained refinement
S = 1.01 w = 1/[σ2(Fo2) + (0.0368P)2 + 0.265P] where P = (Fo2 + 2Fc2)/3
2481 reflections (Δ/σ)max < 0.001
189 parameters Δρmax = 0.23 e Å3
0 restraints Δρmin = −0.18 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.69955 (6) 0.10088 (5) 0.08296 (4) 0.03365 (14)
S1 0.81096 (6) 0.64421 (5) 0.00524 (4) 0.02590 (13)
O1 0.71779 (16) 0.46704 (14) 0.34073 (11) 0.0283 (3)
N1 0.84005 (19) 0.48399 (15) 0.15434 (13) 0.0203 (3)
N2 0.62797 (19) 0.63073 (16) 0.20842 (13) 0.0219 (3)
C1 0.9133 (2) 0.18430 (18) 0.18156 (14) 0.0202 (3)
C2 1.0373 (2) 0.09656 (19) 0.18009 (15) 0.0243 (4)
H2 1.0062 −0.0087 0.1267 0.029*
C3 1.2074 (2) 0.1651 (2) 0.25780 (16) 0.0264 (4)
H3 1.2953 0.1069 0.2562 0.032*
C4 1.2512 (2) 0.3177 (2) 0.33806 (16) 0.0261 (4)
H4 1.3678 0.3632 0.3919 0.031*
C5 1.1247 (2) 0.40367 (18) 0.33975 (15) 0.0226 (3)
H5 1.1539 0.5079 0.3956 0.027*
C6 0.9550 (2) 0.33762 (17) 0.25978 (14) 0.0181 (3)
C7 0.8239 (2) 0.43410 (17) 0.25728 (15) 0.0192 (3)
C8 0.7526 (2) 0.58559 (17) 0.12955 (14) 0.0193 (3)
C9 0.5298 (2) 0.74124 (19) 0.19805 (16) 0.0254 (4)
H9A 0.4528 0.6995 0.1126 0.030*
H9B 0.6234 0.8366 0.2031 0.030*
C10 0.4041 (2) 0.77650 (17) 0.30540 (15) 0.0201 (3)
C11 0.4601 (2) 0.79494 (18) 0.43245 (15) 0.0227 (3)
H11 0.5805 0.7838 0.4530 0.027*
C12 0.3419 (2) 0.82945 (18) 0.52955 (16) 0.0253 (4)
H12 0.3805 0.8400 0.6158 0.030*
C13 0.1679 (2) 0.84838 (18) 0.50053 (17) 0.0279 (4)
H13 0.0868 0.8722 0.5668 0.033*
C14 0.1120 (2) 0.83262 (19) 0.37480 (17) 0.0285 (4)
H14 −0.0065 0.8474 0.3552 0.034*
C15 0.2287 (2) 0.79521 (19) 0.27727 (16) 0.0248 (4)
H15 0.1884 0.7823 0.1907 0.030*
H1N 0.924 (3) 0.459 (2) 0.1044 (18) 0.030 (5)*
H2N 0.605 (3) 0.593 (2) 0.2644 (19) 0.032 (5)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0275 (2) 0.0300 (2) 0.0343 (3) 0.00316 (18) −0.00924 (18) 0.00382 (19)
S1 0.0321 (2) 0.0347 (3) 0.0234 (2) 0.01932 (19) 0.01270 (17) 0.01826 (19)
O1 0.0315 (7) 0.0388 (7) 0.0274 (6) 0.0197 (6) 0.0153 (5) 0.0201 (6)
N1 0.0235 (7) 0.0238 (7) 0.0197 (7) 0.0131 (6) 0.0087 (6) 0.0103 (6)
N2 0.0253 (7) 0.0261 (7) 0.0240 (7) 0.0137 (6) 0.0106 (6) 0.0158 (6)
C1 0.0195 (8) 0.0234 (8) 0.0171 (8) 0.0041 (6) 0.0018 (6) 0.0077 (7)
C2 0.0319 (9) 0.0219 (8) 0.0223 (8) 0.0115 (7) 0.0074 (7) 0.0086 (7)
C3 0.0250 (9) 0.0334 (9) 0.0304 (9) 0.0158 (7) 0.0087 (7) 0.0176 (8)
C4 0.0183 (8) 0.0344 (9) 0.0298 (9) 0.0058 (7) 0.0004 (7) 0.0175 (8)
C5 0.0233 (8) 0.0213 (8) 0.0228 (8) 0.0030 (7) 0.0018 (6) 0.0095 (7)
C6 0.0194 (8) 0.0211 (8) 0.0171 (8) 0.0062 (6) 0.0062 (6) 0.0103 (7)
C7 0.0193 (8) 0.0198 (8) 0.0187 (8) 0.0041 (6) 0.0027 (6) 0.0080 (7)
C8 0.0200 (8) 0.0195 (8) 0.0189 (8) 0.0065 (6) 0.0025 (6) 0.0066 (7)
C9 0.0302 (9) 0.0292 (9) 0.0269 (9) 0.0174 (7) 0.0105 (7) 0.0157 (8)
C10 0.0223 (8) 0.0159 (7) 0.0248 (8) 0.0066 (6) 0.0066 (6) 0.0095 (7)
C11 0.0216 (8) 0.0228 (8) 0.0262 (9) 0.0071 (7) 0.0036 (6) 0.0108 (7)
C12 0.0308 (9) 0.0222 (8) 0.0226 (8) 0.0061 (7) 0.0059 (7) 0.0082 (7)
C13 0.0293 (9) 0.0228 (9) 0.0325 (10) 0.0089 (7) 0.0150 (7) 0.0094 (8)
C14 0.0207 (9) 0.0278 (9) 0.0393 (10) 0.0115 (7) 0.0066 (7) 0.0114 (8)
C15 0.0259 (9) 0.0256 (8) 0.0259 (9) 0.0109 (7) 0.0029 (7) 0.0101 (7)

Geometric parameters (Å, °)

Cl1—C1 1.7409 (16) C5—C6 1.390 (2)
S1—C8 1.6752 (16) C5—H5 0.9500
O1—C7 1.2207 (19) C6—C7 1.500 (2)
N1—C7 1.371 (2) C9—C10 1.506 (2)
N1—C8 1.3913 (19) C9—H9A 0.9900
N1—H1N 0.85 (2) C9—H9B 0.9900
N2—C8 1.318 (2) C10—C15 1.389 (2)
N2—C9 1.459 (2) C10—C11 1.390 (2)
N2—H2N 0.82 (2) C11—C12 1.388 (2)
C1—C2 1.383 (2) C11—H11 0.9500
C1—C6 1.386 (2) C12—C13 1.383 (2)
C2—C3 1.382 (2) C12—H12 0.9500
C2—H2 0.9500 C13—C14 1.384 (3)
C3—C4 1.386 (2) C13—H13 0.9500
C3—H3 0.9500 C14—C15 1.387 (2)
C4—C5 1.385 (2) C14—H14 0.9500
C4—H4 0.9500 C15—H15 0.9500
C7—N1—C8 127.85 (13) N2—C8—N1 116.48 (14)
C7—N1—H1N 116.5 (13) N2—C8—S1 124.11 (12)
C8—N1—H1N 115.2 (13) N1—C8—S1 119.41 (11)
C8—N2—C9 122.95 (14) N2—C9—C10 110.88 (13)
C8—N2—H2N 117.3 (13) N2—C9—H9A 109.5
C9—N2—H2N 119.8 (13) C10—C9—H9A 109.5
C2—C1—C6 121.61 (15) N2—C9—H9B 109.5
C2—C1—Cl1 119.44 (13) C10—C9—H9B 109.5
C6—C1—Cl1 118.95 (12) H9A—C9—H9B 108.1
C3—C2—C1 118.67 (15) C15—C10—C11 118.98 (14)
C3—C2—H2 120.7 C15—C10—C9 118.94 (14)
C1—C2—H2 120.7 C11—C10—C9 122.06 (14)
C2—C3—C4 120.76 (15) C12—C11—C10 120.64 (15)
C2—C3—H3 119.6 C12—C11—H11 119.7
C4—C3—H3 119.6 C10—C11—H11 119.7
C5—C4—C3 119.94 (15) C13—C12—C11 119.88 (16)
C5—C4—H4 120.0 C13—C12—H12 120.1
C3—C4—H4 120.0 C11—C12—H12 120.1
C4—C5—C6 120.07 (15) C12—C13—C14 119.91 (15)
C4—C5—H5 120.0 C12—C13—H13 120.0
C6—C5—H5 120.0 C14—C13—H13 120.0
C1—C6—C5 118.92 (14) C13—C14—C15 120.18 (15)
C1—C6—C7 121.51 (14) C13—C14—H14 119.9
C5—C6—C7 119.54 (14) C15—C14—H14 119.9
O1—C7—N1 124.11 (14) C14—C15—C10 120.39 (15)
O1—C7—C6 122.83 (13) C14—C15—H15 119.8
N1—C7—C6 113.03 (13) C10—C15—H15 119.8
C6—C1—C2—C3 −0.7 (2) C5—C6—C7—N1 98.18 (17)
Cl1—C1—C2—C3 179.23 (12) C9—N2—C8—N1 177.65 (14)
C1—C2—C3—C4 1.6 (2) C9—N2—C8—S1 −1.7 (2)
C2—C3—C4—C5 −0.8 (2) C7—N1—C8—N2 −5.7 (2)
C3—C4—C5—C6 −0.8 (2) C7—N1—C8—S1 173.68 (13)
C2—C1—C6—C5 −0.9 (2) C8—N2—C9—C10 −177.02 (15)
Cl1—C1—C6—C5 179.18 (11) N2—C9—C10—C15 −141.11 (15)
C2—C1—C6—C7 177.52 (14) N2—C9—C10—C11 40.6 (2)
Cl1—C1—C6—C7 −2.4 (2) C15—C10—C11—C12 0.9 (2)
C4—C5—C6—C1 1.6 (2) C9—C10—C11—C12 179.12 (15)
C4—C5—C6—C7 −176.77 (14) C10—C11—C12—C13 −1.1 (2)
C8—N1—C7—O1 4.5 (3) C11—C12—C13—C14 0.1 (2)
C8—N1—C7—C6 −173.81 (14) C12—C13—C14—C15 1.1 (3)
C1—C6—C7—O1 101.52 (19) C13—C14—C15—C10 −1.4 (3)
C5—C6—C7—O1 −80.1 (2) C11—C10—C15—C14 0.4 (2)
C1—C6—C7—N1 −80.19 (18) C9—C10—C15—C14 −177.92 (15)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1N···S1i 0.86 (2) 2.53 (2) 3.3698 (18) 166.2 (18)
N2—H2N···O1 0.82 (2) 2.01 (2) 2.669 (2) 137 (2)

Symmetry codes: (i) −x+2, −y+1, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PK2248).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810023822/pk2248sup1.cif

e-66-o1774-sup1.cif (18KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810023822/pk2248Isup2.hkl

e-66-o1774-Isup2.hkl (121.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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