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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Jul 21;66(Pt 8):o2072. doi: 10.1107/S1600536810027467

Ethyl 2-{[7-fluoro-4-oxo-3-(1H-1,2,4-triazol-1-yl)-4H-thio­chromen-2-yl]sulfan­yl}acetate

Yang Li a, Tao Xiao a,*, Guang-yan Yu a, Dong-liang Liu a
PMCID: PMC3007513  PMID: 21588373

Abstract

In the title compound, C15H12FN3O3S2, the two six-membered rings are essentially coplanar, their mean plnes making a dihedral angle of 1.1 (2)°. The carbonyl C, the two attached non-fused C atoms and the S atom deviate from the plane of the benzene ring by −0.046 (5), −0.017 (5), 0.000 (6), 0.026 (4) Å, respectively. The angle between the mean planes of the triazole ring and the sulfur heterocycle is 53.3 (1)°. In the crystal, inter­molecular C—H⋯O hydrogen bonds link the mol­ecules in a stacked arrangement along the a axis.

Related literature

For related compounds containing a 4H-thio­chromen-4-one fragment, see: Adams et al. (1991); Nakazumi et al. (1992); Weiss et al. (2008); Li et al. (2010). For bond-length data, see: Allen et al. (1987).graphic file with name e-66-o2072-scheme1.jpg

Experimental

Crystal data

  • C15H12FN3O3S2

  • M r = 365.40

  • Monoclinic, Inline graphic

  • a = 9.3890 (19) Å

  • b = 8.2430 (16) Å

  • c = 20.861 (4) Å

  • β = 100.72 (3)°

  • V = 1586.3 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.37 mm−1

  • T = 293 K

  • 0.30 × 0.20 × 0.10 mm

Data collection

  • Enraf–Nonius CAD-4 diffractometer

  • Absorption correction: ψ scan (North et al., 1968) T min = 0.898, T max = 0.964

  • 3053 measured reflections

  • 2867 independent reflections

  • 2186 reflections with I > 2σ(I)

  • R int = 0.013

  • 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

  • R[F 2 > 2σ(F 2)] = 0.044

  • wR(F 2) = 0.151

  • S = 1.00

  • 2867 reflections

  • 217 parameters

  • H-atom parameters constrained

  • Δρmax = 0.22 e Å−3

  • Δρmin = −0.32 e Å−3

Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1985); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810027467/zq2047sup1.cif

e-66-o2072-sup1.cif (19.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810027467/zq2047Isup2.hkl

e-66-o2072-Isup2.hkl (140.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C4—H4A⋯O2i 0.97 2.47 3.199 (4) 131
C11—H11A⋯O2ii 0.93 2.43 3.276 (4) 151

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank the Center of Testing and Analysis, Nanjing University, for support.

supplementary crystallographic information

Comment

The title compound, ethyl 2-((7-fluoro-4-oxo-3-(1H-1,2,4-triazol-1-yl)-4H-thiochromen-2-yl)thio) acetate (I), is a new molecule which has a potential use as antifungal. We herein report its crystal structure.

The molecular structure of (I) is shown in Fig. 1, and selected geometric parameters are given in Table 1. The bond lengths and angles (Table 1) are within normal ranges (Allen et al., 1987). The two-ring system is essentially planar [angle between the mean planes = 1.1 (2)°]. The atoms C7, C8, C15 and S2 deviate from the benzene ring by -0.046 (5), -0.017 (5), 0.000 (6), 0.026 (4) Å, respectively. The angle between the mean planes of the triazole ring and the sulfur heterocycle is 53.3 (1)°.

In the crystal packing, a weak intramolecular C4—H4B···S2 interaction is observed, and intermolecular C—H···O hydrogen bonds link the molecules in a stacked arrangement along the a axis.

Experimental

CS2 (2.0 g, 26.3 mmol) was dropwise added to a solution of 1-(2,4- difluorophenyl)-2-(1H-1,2,4-triazol-1-yl)ethanone (5 g, 22.4 mmol) in DMSO (20 ml) containing NaOH (1.8 g, 45 mmol). The yellow solution was stirred for about 2 h at room temperature. Then ethyl bromoacetate (3.8 g, 22.4 mmol) was dropwise added to the intermediate. After 3 h, the solution was poured into water (50 ml). The crystalline product was isolated by filtration, and washed with water (300 ml). The crystals were obtained by dissolving (I) in acetone (20 ml) and evaporating acetone slowly at room temperature for about 7 d.

Refinement

H atoms were positioned geometrically with C—H = 0.93 Å for aromatic H atoms, C—H = 0.97 Å for methylene H atoms,and with C—H = 0.96 Å for methyl H atoms, and constrained to ride on their parent atoms with Uiso(H) = xUeq(C), where x = 1.2 for aromatic and methylene H atoms and x = 1.5 for methyl H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I), with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

A packing diagram of (I). Intra- and inter-molecular interactions are shown as dashed lines.

Crystal data

C15H12FN3O3S2 F(000) = 752
Mr = 365.40 Dx = 1.530 Mg m3
Monoclinic, P21/c Melting point: 397 K
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 9.3890 (19) Å Cell parameters from 25 reflections
b = 8.2430 (16) Å θ = 9–14°
c = 20.861 (4) Å µ = 0.37 mm1
β = 100.72 (3)° T = 293 K
V = 1586.3 (5) Å3 Block, pink
Z = 4 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 2186 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.013
graphite θmax = 25.3°, θmin = 2.0°
ω/2θ scans h = 0→11
Absorption correction: ψ scan (North et al., 1968) k = 0→9
Tmin = 0.898, Tmax = 0.964 l = −25→24
3053 measured reflections 3 standard reflections every 200 reflections
2867 independent reflections intensity decay: 1%

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151 H-atom parameters constrained
S = 1.00 w = 1/[σ2(Fo2) + (0.1P)2 + 0.170P] where P = (Fo2 + 2Fc2)/3
2867 reflections (Δ/σ)max < 0.001
217 parameters Δρmax = 0.22 e Å3
0 restraints Δρmin = −0.32 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
F 0.2497 (3) 0.9099 (3) −0.12075 (10) 0.0728 (7)
S1 −0.10898 (8) 0.52611 (10) 0.15706 (4) 0.0434 (3)
O1 0.3016 (2) 0.6102 (3) 0.23375 (11) 0.0473 (6)
N1 −0.5765 (3) 0.6974 (5) 0.09253 (17) 0.0721 (10)
C1 0.5439 (4) 0.6893 (6) 0.2766 (2) 0.0871 (15)
H1B 0.6065 0.7781 0.2928 0.131*
H1C 0.5738 0.6438 0.2388 0.131*
H1D 0.5494 0.6077 0.3098 0.131*
S2 0.06614 (8) 0.65095 (9) 0.06388 (3) 0.0375 (2)
O2 0.1081 (3) 0.7704 (3) 0.22875 (11) 0.0554 (6)
N2 −0.4048 (3) 0.5142 (4) 0.07917 (15) 0.0562 (8)
C2 0.3947 (4) 0.7475 (5) 0.2588 (2) 0.0614 (10)
H2B 0.3884 0.8312 0.2257 0.074*
H2C 0.3635 0.7935 0.2967 0.074*
N3 −0.3597 (3) 0.6709 (3) 0.07017 (13) 0.0472 (7)
O3 −0.3528 (3) 0.8531 (3) −0.03655 (13) 0.0646 (7)
C3 0.1619 (3) 0.6420 (4) 0.21998 (13) 0.0372 (7)
C4 0.0790 (3) 0.4931 (3) 0.19245 (14) 0.0382 (7)
H4A 0.0840 0.4136 0.2271 0.046*
H4B 0.1269 0.4468 0.1593 0.046*
C5 −0.5331 (4) 0.5401 (6) 0.0927 (2) 0.0673 (11)
H5A −0.5917 0.4556 0.1020 0.081*
C6 −0.4652 (4) 0.7752 (5) 0.07764 (19) 0.0601 (10)
H6A −0.4601 0.8871 0.0729 0.072*
C7 −0.2261 (3) 0.6990 (4) 0.04953 (14) 0.0378 (7)
C8 −0.2363 (3) 0.7960 (4) −0.00981 (15) 0.0428 (7)
C9 −0.1040 (3) 0.8222 (3) −0.03656 (14) 0.0386 (7)
C10 −0.1155 (4) 0.9141 (4) −0.09443 (15) 0.0473 (8)
H10A −0.2052 0.9558 −0.1138 0.057*
C11 0.0020 (4) 0.9427 (4) −0.12239 (16) 0.0521 (9)
H11A −0.0068 1.0032 −0.1606 0.063*
C12 0.1336 (4) 0.8808 (4) −0.09318 (16) 0.0490 (8)
C13 0.1538 (4) 0.7913 (4) −0.03709 (15) 0.0432 (7)
H13A 0.2445 0.7502 −0.0188 0.052*
C14 0.0329 (3) 0.7637 (3) −0.00815 (13) 0.0357 (7)
C15 −0.1023 (3) 0.6355 (3) 0.08501 (14) 0.0362 (7)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
F 0.0870 (16) 0.0758 (15) 0.0678 (14) −0.0063 (13) 0.0462 (12) 0.0109 (12)
S1 0.0411 (4) 0.0490 (5) 0.0400 (4) −0.0036 (4) 0.0071 (3) 0.0107 (3)
O1 0.0433 (12) 0.0353 (12) 0.0611 (14) −0.0009 (10) 0.0037 (10) −0.0065 (10)
N1 0.0419 (17) 0.088 (3) 0.088 (2) −0.0022 (17) 0.0173 (16) 0.019 (2)
C1 0.052 (2) 0.074 (3) 0.128 (4) −0.007 (2) −0.003 (2) −0.028 (3)
S2 0.0376 (4) 0.0383 (4) 0.0366 (4) 0.0003 (3) 0.0071 (3) 0.0057 (3)
O2 0.0633 (15) 0.0396 (13) 0.0589 (15) 0.0130 (11) −0.0001 (11) −0.0129 (11)
N2 0.0419 (16) 0.0521 (18) 0.072 (2) −0.0130 (13) 0.0024 (14) 0.0184 (15)
C2 0.055 (2) 0.045 (2) 0.083 (3) −0.0150 (17) 0.0077 (19) −0.0131 (18)
N3 0.0371 (14) 0.0473 (16) 0.0551 (16) −0.0067 (12) 0.0029 (12) 0.0093 (13)
O3 0.0485 (14) 0.0726 (18) 0.0679 (16) 0.0057 (13) −0.0015 (12) 0.0296 (14)
C3 0.0488 (18) 0.0330 (16) 0.0290 (14) 0.0022 (14) 0.0051 (12) 0.0027 (12)
C4 0.0441 (16) 0.0322 (16) 0.0368 (15) 0.0017 (13) 0.0038 (13) 0.0026 (13)
C5 0.044 (2) 0.078 (3) 0.076 (3) −0.017 (2) 0.0012 (18) 0.025 (2)
C6 0.0440 (19) 0.058 (2) 0.081 (3) 0.0040 (18) 0.0176 (18) 0.013 (2)
C7 0.0348 (15) 0.0327 (16) 0.0456 (16) −0.0044 (13) 0.0067 (12) 0.0033 (13)
C8 0.0470 (18) 0.0354 (16) 0.0426 (16) −0.0047 (14) −0.0004 (14) 0.0027 (14)
C9 0.0526 (18) 0.0261 (15) 0.0355 (15) −0.0016 (13) 0.0038 (13) −0.0009 (12)
C10 0.063 (2) 0.0363 (17) 0.0384 (16) −0.0023 (16) −0.0007 (15) 0.0038 (14)
C11 0.084 (3) 0.0357 (18) 0.0392 (17) −0.0022 (18) 0.0171 (17) 0.0065 (14)
C12 0.069 (2) 0.0382 (18) 0.0451 (18) −0.0060 (16) 0.0244 (16) −0.0024 (15)
C13 0.0524 (18) 0.0377 (17) 0.0427 (16) −0.0012 (15) 0.0168 (14) −0.0017 (14)
C14 0.0496 (18) 0.0242 (14) 0.0333 (15) −0.0043 (13) 0.0074 (13) −0.0022 (12)
C15 0.0419 (16) 0.0294 (15) 0.0373 (15) −0.0054 (13) 0.0077 (12) −0.0009 (12)

Geometric parameters (Å, °)

F—C12 1.345 (4) N3—C7 1.419 (4)
S1—C15 1.764 (3) O3—C8 1.226 (4)
S1—C4 1.802 (3) C3—C4 1.509 (4)
O1—C3 1.316 (4) C4—H4A 0.9700
O1—C2 1.466 (4) C4—H4B 0.9700
N1—C6 1.311 (4) C5—H5A 0.9300
N1—C5 1.359 (5) C6—H6A 0.9300
C1—C2 1.462 (5) C7—C15 1.361 (4)
C1—H1B 0.9600 C7—C8 1.461 (4)
C1—H1C 0.9600 C8—C9 1.469 (4)
C1—H1D 0.9600 C9—C14 1.397 (4)
S2—C15 1.723 (3) C9—C10 1.412 (4)
S2—C14 1.745 (3) C10—C11 1.361 (5)
O2—C3 1.201 (4) C10—H10A 0.9300
N2—C5 1.305 (5) C11—C12 1.370 (5)
N2—N3 1.383 (4) C11—H11A 0.9300
C2—H2B 0.9700 C12—C13 1.366 (5)
C2—H2C 0.9700 C13—C14 1.400 (4)
N3—C6 1.342 (4) C13—H13A 0.9300
C15—S1—C4 103.82 (14) N1—C5—H5A 121.8
C3—O1—C2 115.3 (3) N1—C6—N3 110.6 (4)
C6—N1—C5 102.4 (3) N1—C6—H6A 124.7
C2—C1—H1B 109.5 N3—C6—H6A 124.7
C2—C1—H1C 109.5 C15—C7—N3 119.1 (3)
H1B—C1—H1C 109.5 C15—C7—C8 125.8 (3)
C2—C1—H1D 109.5 N3—C7—C8 115.1 (3)
H1B—C1—H1D 109.5 O3—C8—C7 120.5 (3)
H1C—C1—H1D 109.5 O3—C8—C9 121.1 (3)
C15—S2—C14 103.51 (15) C7—C8—C9 118.4 (3)
C5—N2—N3 101.2 (3) C14—C9—C10 117.7 (3)
C1—C2—O1 108.4 (3) C14—C9—C8 124.3 (3)
C1—C2—H2B 110.0 C10—C9—C8 117.9 (3)
O1—C2—H2B 110.0 C11—C10—C9 121.4 (3)
C1—C2—H2C 110.0 C11—C10—H10A 119.3
O1—C2—H2C 110.0 C9—C10—H10A 119.3
H2B—C2—H2C 108.4 C10—C11—C12 118.7 (3)
C6—N3—N2 109.3 (3) C10—C11—H11A 120.7
C6—N3—C7 130.1 (3) C12—C11—H11A 120.7
N2—N3—C7 120.3 (3) F—C12—C13 117.9 (3)
O2—C3—O1 124.9 (3) F—C12—C11 118.6 (3)
O2—C3—C4 125.0 (3) C13—C12—C11 123.5 (3)
O1—C3—C4 110.1 (2) C12—C13—C14 117.6 (3)
C3—C4—S1 115.4 (2) C12—C13—H13A 121.2
C3—C4—H4A 108.4 C14—C13—H13A 121.2
S1—C4—H4A 108.4 C9—C14—C13 121.1 (3)
C3—C4—H4B 108.4 C9—C14—S2 123.5 (2)
S1—C4—H4B 108.4 C13—C14—S2 115.4 (2)
H4A—C4—H4B 107.5 C7—C15—S2 124.3 (2)
N2—C5—N1 116.4 (3) C7—C15—S1 119.8 (2)
N2—C5—H5A 121.8 S2—C15—S1 115.82 (17)
C3—O1—C2—C1 175.4 (3) C7—C8—C9—C10 179.1 (3)
C5—N2—N3—C6 −1.3 (4) C14—C9—C10—C11 1.1 (4)
C5—N2—N3—C7 −175.4 (3) C8—C9—C10—C11 −179.6 (3)
C2—O1—C3—O2 −2.9 (5) C9—C10—C11—C12 −0.2 (5)
C2—O1—C3—C4 177.9 (3) C10—C11—C12—F −179.7 (3)
O2—C3—C4—S1 11.9 (4) C10—C11—C12—C13 −0.1 (5)
O1—C3—C4—S1 −168.9 (2) F—C12—C13—C14 179.0 (3)
C15—S1—C4—C3 70.5 (2) C11—C12—C13—C14 −0.6 (5)
N3—N2—C5—N1 0.9 (5) C10—C9—C14—C13 −1.8 (4)
C6—N1—C5—N2 −0.1 (5) C8—C9—C14—C13 178.9 (3)
C5—N1—C6—N3 −0.8 (4) C10—C9—C14—S2 179.0 (2)
N2—N3—C6—N1 1.4 (4) C8—C9—C14—S2 −0.2 (4)
C7—N3—C6—N1 174.8 (3) C12—C13—C14—C9 1.6 (4)
C6—N3—C7—C15 131.6 (4) C12—C13—C14—S2 −179.2 (2)
N2—N3—C7—C15 −55.7 (4) C15—S2—C14—C9 0.6 (3)
C6—N3—C7—C8 −48.6 (5) C15—S2—C14—C13 −178.6 (2)
N2—N3—C7—C8 124.1 (3) N3—C7—C15—S2 176.7 (2)
C15—C7—C8—O3 −177.0 (3) C8—C7—C15—S2 −3.0 (5)
N3—C7—C8—O3 3.3 (4) N3—C7—C15—S1 −2.2 (4)
C15—C7—C8—C9 3.4 (5) C8—C7—C15—S1 178.1 (2)
N3—C7—C8—C9 −176.4 (3) C14—S2—C15—C7 0.9 (3)
O3—C8—C9—C14 178.7 (3) C14—S2—C15—S1 179.85 (16)
C7—C8—C9—C14 −1.6 (4) C4—S1—C15—C7 −171.9 (2)
O3—C8—C9—C10 −0.6 (5) C4—S1—C15—S2 9.1 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C4—H4A···O2i 0.97 2.47 3.199 (4) 131
C4—H4B···S2 0.97 2.59 2.963 (3) 103
C11—H11A···O2ii 0.93 2.43 3.276 (4) 151

Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) −x, −y+2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZQ2047).

References

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  3. Enraf–Nonius (1985). CAD-4 EXPRESS Enraf–Nonius, Delft, The Netherlands.
  4. Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810027467/zq2047sup1.cif

e-66-o2072-sup1.cif (19.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810027467/zq2047Isup2.hkl

e-66-o2072-Isup2.hkl (140.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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