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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Jul 10;66(Pt 8):o1965. doi: 10.1107/S1600536810025572

Diethyl 2-[(3,5-dimethyl-1H-pyrazol-1-yl)(4-meth­oxy­phen­yl)meth­yl]propane­dioate

Ihssan Meskini a, Maria Daoudi a,*, Jean-Claude Daran b, Abdelali Kerbal a, Hafid Zouihri c
PMCID: PMC3007575  PMID: 21588286

Abstract

The title compound, C20H26N2O5, was prepared in good yield (76%) through condensation of diethyl (4-meth­oxy­benz­yl)propane­dioate with 3,5-dimethyl-1H-pyrazole. The dihedral between the benzene and pyrazole rings is 83.96 (10)°. The crystal packing is stabilized by a C—H⋯O inter­action, which links the mol­ecules into centrosymmetric dimers.

Related literature

For related compounds displaying biological activity, see: Dayam et al. (2007); Patil et al. (2007); Ramkumar et al. (2008); Sechi et al. (2009) & Zeng et al. (2008). For the synthetic procedure, see: Pommier & Neamati (2006).graphic file with name e-66-o1965-scheme1.jpg

Experimental

Crystal data

  • C20H26N2O5

  • M r = 374.43

  • Monoclinic, Inline graphic

  • a = 11.9618 (3) Å

  • b = 7.9681 (2) Å

  • c = 21.1269 (6) Å

  • β = 96.504 (1)°

  • V = 2000.70 (9) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 296 K

  • 0.23 × 0.17 × 0.14 mm

Data collection

  • Bruker X8 APEXII CCD area-detector diffractometer

  • 18616 measured reflections

  • 3921 independent reflections

  • 3177 reflections with I > 2σ(I)

  • R int = 0.027

Refinement

  • R[F 2 > 2σ(F 2)] = 0.056

  • wR(F 2) = 0.154

  • S = 1.05

  • 3921 reflections

  • 249 parameters

  • H-atom parameters constrained

  • Δρmax = 0.68 e Å−3

  • Δρmin = −0.45 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810025572/bt5280sup1.cif

e-66-o1965-sup1.cif (19.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025572/bt5280Isup2.hkl

e-66-o1965-Isup2.hkl (192.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C12—H12⋯O2i 0.93 2.51 3.358 (3) 152

Symmetry code: (i) Inline graphic.

Acknowledgments

This work was supported by grants from Project PGR-UMP-BH-2005, the Centre National de Recherche Scientifique, CNRS (France), the Centre National pour la Recherche Scientifique et Technique, CNRST (Morocco), and the CURI (Morocco).

supplementary crystallographic information

Comment

For the rational design of new HIV-1 Integrase (H—I) inhibitors, one validated target for chemotherapeutic intervention (Dayam et al., 2007), is fundamentally based on intermolecular coordination between H—I / chemical inhibitor / metals (Mg+2 and Mn+2, co-factors of the enzyme), leading to the formation of bimetallic complexes (Zeng et al., 2008; Sechi et al., 2009). Thereby, several bimetallic metal complexes, in many cases exploring the known-well polydentate ligands, appear in this scenario as the most promising concept to be employed in either enzyme / drug interaction or electron transfer process, in the last case involving the biological oxygen transfer (Sechi et al., 2009; Ramkumar et al., 2008). Another exciting example of application for such polydentate ligands involves the synergic water activation, that occurs via the so-called -remote metallic atoms. Such organometallic compounds are structurally deemed to promote or block the H—I activity (Zeng et al., 2008).

In the molecule of the title compound (Fig.1), the dihedral angle between the planes of the pheny and the pyrazol ring is 83.96 (10)°.

Experimental

To a solution of the diethyl (4-methoxybenzyl)propanedioate (5 mmol) in water (20 ml) was added the 3,5-dimethyl-1H-pyrazole (6 mmol) and the mixture and the stirring was continued at room temperature until the complete consume of the starting material. After removing solvent, the crude products were dissolved in diethyl ether (2x40 ml) and washed with water until the pH became neutral. The organic solvent was dried with sodium sulfate and then evaporated to give the pure compound (I) with 76% yield.. White crystals are obtained by recrystallization in ether/hexane (2/1).

Suitable single-crystal of malonate derivative (I) was obtained by recrystallization from ethanol. A white-transparent crystal was mounted on a glass fibre.

Refinement

All H atoms attached to C atoms were fixed geometrically and treated as riding with C—H = 0.96 Å (methyl), C—H = 0.93 Å (aromatic), 0.97 Å (methylene) and 0.98 Å (methine) with Uiso(H) = 1.2Ueq or Uiso(H) = 1.5Ueq(methyl).

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound with the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms are represented as small spheres of arbitrary radii.

Fig. 2.

Fig. 2.

Partial packing view showing the chain generated by C—H···O hydrogen bonds shown as dashed lines. Symmetry code for generating the second molecule: 1 - x,-y,1 - z.

Fig. 3.

Fig. 3.

View of the title compound showing displacement ellipsoids at the 50% probability level.

Crystal data

C20H26N2O5 F(000) = 800
Mr = 374.43 Dx = 1.243 Mg m3
Monoclinic, P21/c Melting point: 361 K
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 11.9618 (3) Å Cell parameters from 2174 reflections
b = 7.9681 (2) Å θ = 2.3–27.1°
c = 21.1269 (6) Å µ = 0.09 mm1
β = 96.504 (1)° T = 296 K
V = 2000.70 (9) Å3 Block, colourless
Z = 4 0.23 × 0.17 × 0.14 mm

Data collection

Bruker X8 APEXII CCD area-detector diffractometer 3177 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.027
graphite θmax = 26.0°, θmin = 2.7°
φ and ω scans h = −14→14
18616 measured reflections k = −9→9
3921 independent reflections l = −26→26

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154 H-atom parameters constrained
S = 1.05 w = 1/[σ2(Fo2) + (0.0687P)2 + 1.8319P] where P = (Fo2 + 2Fc2)/3
3921 reflections (Δ/σ)max = 0.007
249 parameters Δρmax = 0.68 e Å3
0 restraints Δρmin = −0.45 e Å3

Special details

Experimental. The data collection nominally covered a sphere of reciprocal space, by a combination of tree sets of exposures; each set had a different φ angle for the crystal and each exposure covered 0.5° in ω and 20 s in time. The crystal-to-detector distance was 37.5 mm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O2 0.40914 (11) −0.14261 (19) 0.44322 (7) 0.0301 (3)
O3 0.26937 (12) −0.19794 (18) 0.36564 (7) 0.0321 (4)
O4 0.39768 (14) 0.2442 (2) 0.36381 (8) 0.0441 (4)
O5 0.23951 (15) 0.1580 (2) 0.30637 (7) 0.0446 (4)
O1 0.16987 (15) −0.2065 (2) 0.68944 (8) 0.0468 (5)
N1 0.25069 (14) 0.3219 (2) 0.47437 (8) 0.0252 (4)
N2 0.15274 (14) 0.3525 (2) 0.43620 (8) 0.0297 (4)
C1 0.29918 (16) 0.1528 (2) 0.47752 (9) 0.0230 (4)
H1 0.3813 0.1633 0.4845 0.028*
C2 0.26772 (16) 0.0673 (3) 0.41296 (9) 0.0244 (4)
H2 0.1859 0.0541 0.4051 0.029*
C11 0.26097 (16) 0.0542 (2) 0.53261 (9) 0.0229 (4)
C3 0.32439 (16) −0.1032 (2) 0.41081 (9) 0.0239 (4)
C12 0.33950 (17) −0.0251 (3) 0.57616 (9) 0.0277 (4)
H12 0.4154 −0.0197 0.5706 0.033*
C21 0.28468 (17) 0.4563 (3) 0.51094 (10) 0.0285 (5)
C16 0.14790 (16) 0.0419 (3) 0.54174 (10) 0.0277 (4)
H16 0.0941 0.0929 0.5127 0.033*
C13 0.30680 (18) −0.1116 (3) 0.62736 (10) 0.0323 (5)
H13 0.3605 −0.1643 0.6559 0.039*
C14 0.19347 (18) −0.1206 (3) 0.63658 (10) 0.0311 (5)
C15 0.11364 (17) −0.0445 (3) 0.59307 (10) 0.0312 (5)
H15 0.0376 −0.0515 0.5983 0.037*
C6 0.30985 (19) 0.1697 (3) 0.35912 (10) 0.0308 (5)
C23 0.12710 (18) 0.5105 (3) 0.44907 (11) 0.0322 (5)
C4 0.32363 (19) −0.3556 (3) 0.35159 (12) 0.0370 (5)
H4A 0.2679 −0.4329 0.3314 0.044*
H4B 0.3575 −0.4063 0.3909 0.044*
C22 0.20634 (18) 0.5797 (3) 0.49546 (10) 0.0330 (5)
H22 0.2060 0.6874 0.5124 0.040*
C5 0.4121 (2) −0.3243 (4) 0.30837 (11) 0.0466 (6)
H5A 0.3789 −0.2693 0.2704 0.070*
H5B 0.4442 −0.4292 0.2973 0.070*
H5C 0.4699 −0.2542 0.3296 0.070*
C25 0.3888 (2) 0.4563 (3) 0.55689 (12) 0.0416 (6)
H25A 0.3743 0.4000 0.5953 0.062*
H25B 0.4114 0.5699 0.5666 0.062*
H25C 0.4478 0.3990 0.5384 0.062*
C7 0.2781 (3) 0.2351 (4) 0.24975 (12) 0.0612 (8)
H7A 0.2695 0.3560 0.2515 0.073*
H7B 0.3571 0.2098 0.2481 0.073*
C24 0.0258 (2) 0.5924 (3) 0.41410 (14) 0.0489 (7)
H24A 0.0493 0.6722 0.3842 0.073*
H24B −0.0160 0.6490 0.4439 0.073*
H24C −0.0209 0.5086 0.3917 0.073*
C17 0.0566 (2) −0.2040 (4) 0.70479 (13) 0.0545 (7)
H17A 0.0335 −0.0900 0.7101 0.082*
H17B 0.0521 −0.2649 0.7436 0.082*
H17C 0.0081 −0.2554 0.6709 0.082*
C8 0.2127 (3) 0.1700 (5) 0.19471 (13) 0.0731 (10)
H8A 0.2245 0.0511 0.1922 0.110*
H8B 0.2351 0.2230 0.1573 0.110*
H8C 0.1345 0.1919 0.1975 0.110*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O2 0.0249 (7) 0.0292 (8) 0.0357 (8) 0.0049 (6) 0.0007 (6) −0.0048 (6)
O3 0.0317 (8) 0.0265 (8) 0.0371 (8) 0.0009 (6) −0.0005 (6) −0.0089 (6)
O4 0.0466 (10) 0.0436 (10) 0.0435 (9) −0.0125 (8) 0.0117 (8) 0.0046 (8)
O5 0.0624 (11) 0.0441 (10) 0.0264 (8) −0.0085 (8) 0.0010 (7) 0.0036 (7)
O1 0.0475 (10) 0.0586 (12) 0.0360 (9) −0.0031 (9) 0.0117 (7) 0.0143 (8)
N1 0.0258 (8) 0.0229 (9) 0.0265 (8) 0.0027 (7) 0.0013 (7) −0.0005 (7)
N2 0.0280 (9) 0.0278 (9) 0.0330 (9) 0.0061 (7) 0.0015 (7) 0.0008 (7)
C1 0.0216 (9) 0.0196 (9) 0.0277 (10) 0.0025 (7) 0.0022 (7) −0.0011 (8)
C2 0.0221 (9) 0.0238 (10) 0.0273 (10) 0.0019 (8) 0.0031 (8) −0.0012 (8)
C11 0.0242 (9) 0.0203 (10) 0.0246 (9) 0.0011 (8) 0.0036 (7) −0.0037 (7)
C3 0.0230 (10) 0.0237 (10) 0.0257 (9) −0.0028 (8) 0.0067 (8) −0.0018 (8)
C12 0.0228 (10) 0.0311 (11) 0.0287 (10) 0.0005 (8) 0.0009 (8) −0.0014 (8)
C21 0.0320 (11) 0.0253 (11) 0.0294 (10) −0.0012 (8) 0.0088 (8) −0.0025 (8)
C16 0.0242 (10) 0.0293 (11) 0.0292 (10) 0.0060 (8) 0.0014 (8) −0.0008 (8)
C13 0.0315 (11) 0.0372 (13) 0.0268 (10) 0.0019 (9) −0.0022 (8) 0.0033 (9)
C14 0.0379 (12) 0.0310 (12) 0.0253 (10) −0.0017 (9) 0.0073 (9) 0.0011 (8)
C15 0.0255 (10) 0.0350 (12) 0.0340 (11) 0.0006 (9) 0.0078 (8) −0.0019 (9)
C6 0.0405 (12) 0.0244 (11) 0.0277 (10) 0.0041 (9) 0.0041 (9) −0.0028 (8)
C23 0.0340 (11) 0.0253 (11) 0.0385 (11) 0.0075 (9) 0.0100 (9) 0.0030 (9)
C4 0.0369 (12) 0.0279 (11) 0.0454 (13) 0.0010 (9) 0.0015 (10) −0.0159 (10)
C22 0.0401 (12) 0.0222 (10) 0.0384 (12) 0.0037 (9) 0.0122 (10) −0.0033 (9)
C5 0.0504 (15) 0.0548 (16) 0.0350 (12) 0.0052 (12) 0.0069 (11) −0.0127 (12)
C25 0.0425 (13) 0.0381 (13) 0.0423 (13) −0.0001 (11) −0.0034 (10) −0.0091 (11)
C7 0.097 (2) 0.0572 (18) 0.0293 (13) −0.0235 (17) 0.0078 (14) 0.0054 (12)
C24 0.0432 (14) 0.0413 (15) 0.0613 (16) 0.0180 (11) 0.0019 (12) 0.0046 (13)
C17 0.0596 (17) 0.0595 (18) 0.0492 (15) −0.0086 (14) 0.0274 (13) 0.0059 (13)
C8 0.113 (3) 0.072 (2) 0.0346 (14) −0.033 (2) 0.0104 (16) −0.0004 (14)

Geometric parameters (Å, °)

O2—C3 1.199 (2) C13—H13 0.9300
O3—C3 1.331 (2) C14—C15 1.388 (3)
O3—C4 1.460 (3) C15—H15 0.9300
O4—C6 1.201 (3) C23—C22 1.397 (3)
O5—C6 1.322 (3) C23—C24 1.496 (3)
O5—C7 1.465 (3) C4—C5 1.495 (3)
O1—C14 1.367 (3) C4—H4A 0.9700
O1—C17 1.428 (3) C4—H4B 0.9700
N1—C21 1.355 (3) C22—H22 0.9300
N1—N2 1.367 (2) C5—H5A 0.9600
N1—C1 1.466 (2) C5—H5B 0.9600
N2—C23 1.331 (3) C5—H5C 0.9600
C1—C11 1.517 (3) C25—H25A 0.9600
C1—C2 1.533 (3) C25—H25B 0.9600
C1—H1 0.9800 C25—H25C 0.9600
C2—C3 1.521 (3) C7—C8 1.424 (4)
C2—C6 1.531 (3) C7—H7A 0.9700
C2—H2 0.9800 C7—H7B 0.9700
C11—C12 1.390 (3) C24—H24A 0.9600
C11—C16 1.391 (3) C24—H24B 0.9600
C12—C13 1.376 (3) C24—H24C 0.9600
C12—H12 0.9300 C17—H17A 0.9600
C21—C22 1.372 (3) C17—H17B 0.9600
C21—C25 1.490 (3) C17—H17C 0.9600
C16—C15 1.385 (3) C8—H8A 0.9600
C16—H16 0.9300 C8—H8B 0.9600
C13—C14 1.393 (3) C8—H8C 0.9600
C3—O3—C4 116.03 (16) N2—C23—C24 120.3 (2)
C6—O5—C7 115.4 (2) C22—C23—C24 128.4 (2)
C14—O1—C17 117.87 (19) O3—C4—C5 110.0 (2)
C21—N1—N2 112.18 (17) O3—C4—H4A 109.7
C21—N1—C1 127.50 (16) C5—C4—H4A 109.7
N2—N1—C1 119.92 (16) O3—C4—H4B 109.7
C23—N2—N1 104.46 (17) C5—C4—H4B 109.7
N1—C1—C11 111.05 (15) H4A—C4—H4B 108.2
N1—C1—C2 108.18 (15) C21—C22—C23 105.97 (19)
C11—C1—C2 112.80 (16) C21—C22—H22 127.0
N1—C1—H1 108.2 C23—C22—H22 127.0
C11—C1—H1 108.2 C4—C5—H5A 109.5
C2—C1—H1 108.2 C4—C5—H5B 109.5
C3—C2—C6 105.57 (15) H5A—C5—H5B 109.5
C3—C2—C1 110.98 (16) C4—C5—H5C 109.5
C6—C2—C1 110.86 (16) H5A—C5—H5C 109.5
C3—C2—H2 109.8 H5B—C5—H5C 109.5
C6—C2—H2 109.8 C21—C25—H25A 109.5
C1—C2—H2 109.8 C21—C25—H25B 109.5
C12—C11—C16 118.10 (18) H25A—C25—H25B 109.5
C12—C11—C1 120.23 (17) C21—C25—H25C 109.5
C16—C11—C1 121.66 (17) H25A—C25—H25C 109.5
O2—C3—O3 125.32 (19) H25B—C25—H25C 109.5
O2—C3—C2 124.59 (18) C8—C7—O5 108.6 (2)
O3—C3—C2 110.01 (16) C8—C7—H7A 110.0
C13—C12—C11 121.13 (19) O5—C7—H7A 110.0
C13—C12—H12 119.4 C8—C7—H7B 110.0
C11—C12—H12 119.4 O5—C7—H7B 110.0
N1—C21—C22 106.12 (18) H7A—C7—H7B 108.3
N1—C21—C25 123.09 (19) C23—C24—H24A 109.5
C22—C21—C25 130.8 (2) C23—C24—H24B 109.5
C15—C16—C11 121.46 (19) H24A—C24—H24B 109.5
C15—C16—H16 119.3 C23—C24—H24C 109.5
C11—C16—H16 119.3 H24A—C24—H24C 109.5
C12—C13—C14 120.21 (19) H24B—C24—H24C 109.5
C12—C13—H13 119.9 O1—C17—H17A 109.5
C14—C13—H13 119.9 O1—C17—H17B 109.5
O1—C14—C15 124.7 (2) H17A—C17—H17B 109.5
O1—C14—C13 115.74 (19) O1—C17—H17C 109.5
C15—C14—C13 119.52 (19) H17A—C17—H17C 109.5
C16—C15—C14 119.56 (19) H17B—C17—H17C 109.5
C16—C15—H15 120.2 C7—C8—H8A 109.5
C14—C15—H15 120.2 C7—C8—H8B 109.5
O4—C6—O5 124.9 (2) H8A—C8—H8B 109.5
O4—C6—C2 124.10 (19) C7—C8—H8C 109.5
O5—C6—C2 110.92 (18) H8A—C8—H8C 109.5
N2—C23—C22 111.27 (19) H8B—C8—H8C 109.5

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C12—H12···O2i 0.93 2.51 3.358 (3) 152

Symmetry codes: (i) −x+1, −y, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5280).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810025572/bt5280sup1.cif

e-66-o1965-sup1.cif (19.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025572/bt5280Isup2.hkl

e-66-o1965-Isup2.hkl (192.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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