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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Aug 18;66(Pt 9):m1131. doi: 10.1107/S1600536810032563

Dichlorido(2-{[2-(piperazin-4-ium-1-yl)eth­yl]imino­meth­yl}phenolate)cadmium(II)

Muhammad Saleh Salga a, Hamid Khaledi a,*, Hapipah Mohd Ali a
PMCID: PMC3007917  PMID: 21588532

Abstract

In the title compound, [CdCl2(C13H19N3O)], the CdII ion is penta­coordinated with the N,N,O-tridentate Schiff base 2-{[2-(piperazin-4-ium-1-yl)eth­yl]imino­meth­yl}phenolate ligand and two Cl atoms in a highly distorted square-pyramidal geometry; the piperazine ring adopts a chair conformation. In the crystal structure, adjacent mol­ecules are linked together via N—H⋯O and N—H⋯Cl hydrogen bonds, forming infinite layers parallel to the ab plane. The layers are further connected through C—H⋯Cl inter­actions into a three-dimensional network.

Related literature

For related structures, see: Mukhopadhyay et al. (2003); Xu et al. (2008).graphic file with name e-66-m1131-scheme1.jpg

Experimental

Crystal data

  • [CdCl2(C13H19N3O)]

  • M r = 416.61

  • Orthorhombic, Inline graphic

  • a = 14.7512 (16) Å

  • b = 13.1406 (15) Å

  • c = 16.6188 (19) Å

  • V = 3221.4 (6) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 1.69 mm−1

  • T = 100 K

  • 0.45 × 0.39 × 0.18 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.518, T max = 0.751

  • 38841 measured reflections

  • 3700 independent reflections

  • 3409 reflections with I > 2σ(I)

  • R int = 0.041

Refinement

  • R[F 2 > 2σ(F 2)] = 0.017

  • wR(F 2) = 0.045

  • S = 1.06

  • 3700 reflections

  • 187 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.44 e Å−3

  • Δρmin = −0.28 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810032563/pv2318sup1.cif

e-66-m1131-sup1.cif (18KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810032563/pv2318Isup2.hkl

e-66-m1131-Isup2.hkl (181.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H3A⋯Cl1i 0.89 (2) 2.53 (2) 3.3108 (14) 146 (2)
N3—H3A⋯Cl2ii 0.89 (2) 2.78 (2) 3.2689 (14) 116 (2)
N3—H3B⋯O1ii 0.89 (2) 1.80 (2) 2.6743 (17) 167 (2)
C11—H11B⋯Cl2 0.99 2.70 3.6372 (16) 157
C13—H13B⋯Cl1 0.99 2.78 3.4302 (16) 124
C4—H4⋯Cl1iii 0.95 2.80 3.7165 (17) 161
C13—H13A⋯Cl1i 0.99 2.82 3.5851 (16) 134

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

The authors thank the University of Malaya for funding this study (FRGS grant No. FP009/2008 C).

supplementary crystallographic information

Comment

The title compound is a cadmium (II) complex of the Schiff base ligand, 1-(2-salicylaldiminoethyl)piperazine. The piperazinyl arm of the ligand can, in principle, have both boat and chair conformations that makes the molecule to display ambidentate coordination behavior. The ligand has been shown to act as a tetradentate or tridentate chelate with nickel(II) ions, depending on the piperazine ring conformation (Mukhopadhyay et al., 2003). In the title complex, the piperazine ring adopts the chair conformation and the ligand is bound to the metal ion in a NNO-tridentate fashion. The cadmium(II) atom is penta-coordinated by the Schiff base ligand and two chloride atoms in a highly distorted square planar geometry (index τ = 0.38). The piperzaine nitrogen atom, N3, which stays away from coordination, is protonated, implying the zwitterionic nature of the complex. In the crystal structure, intermolecular N—H···O, N—H···Cl and C—H···Cl hydrogen bonds connect the adjacent molecules into infinite three-dimensional network (Fig. 2). Morever, intramolecular C—H···Cl hydrogen bondings are observed. The crystal structure contains void spaces with the size of 199 Å-3 (6.2% of the cell volume) within which there is no evidence for included solvent.

Experimental

The Schiff base ligand was prepared following the procedure reported previously (Mukhopadhyay et al., 2003). The cadmium (II) complex was synthesized by treatment of the ligand (0.233 g, 1 mmol) with cadmium (II) chloride (0.183 g, 1 mmol) in ethanol (20 ml). The mixture was stirred at room temperature for 10 min and then set aside for a few days whereupon the yellow crystals of the title compound were obtained.

Refinement

The C-bound hydrogen atoms were placed at idealized positions (C—H = 0.95–0.99 Å) and were treated as riding on their parent atoms. The N-bound hydrogen atoms were located in a difference Fourier map and refined with distance restraint of N—H 0.88 (2) Å. The Uiso(H) were allowed at 1.2Ueq(C) or 1.5Ueq(N). The final difference map was essentially featurless.

Figures

Fig. 1.

Fig. 1.

Displacement ellipsoid plot of the title compound at the 50% probability level. H atoms are drawn as spheres of arbitrary radius.

Fig. 2.

Fig. 2.

Unit-cell packing of the title compound, viewed down the b axis, showing the hydrogen-bonded polymeric network. H atoms not involved in hydrogen bonds have been omitted for clarity.

Crystal data

[CdCl2(C13H19N3O)] F(000) = 1664
Mr = 416.61 Dx = 1.718 Mg m3
Orthorhombic, Pbca Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2ab Cell parameters from 9877 reflections
a = 14.7512 (16) Å θ = 2.4–31.3°
b = 13.1406 (15) Å µ = 1.69 mm1
c = 16.6188 (19) Å T = 100 K
V = 3221.4 (6) Å3 Block, yellow
Z = 8 0.45 × 0.39 × 0.18 mm

Data collection

Bruker APEXII CCD diffractometer 3700 independent reflections
Radiation source: fine-focus sealed tube 3409 reflections with I > 2σ(I)
graphite Rint = 0.041
φ and ω scans θmax = 27.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −19→19
Tmin = 0.518, Tmax = 0.751 k = −17→17
38841 measured reflections l = −21→21

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.017 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.045 H atoms treated by a mixture of independent and constrained refinement
S = 1.06 w = 1/[σ2(Fo2) + (0.0187P)2 + 2.1332P] where P = (Fo2 + 2Fc2)/3
3700 reflections (Δ/σ)max = 0.002
187 parameters Δρmax = 0.44 e Å3
2 restraints Δρmin = −0.28 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cd1 0.915609 (7) 0.521115 (8) 0.335271 (6) 0.01335 (4)
Cl1 0.80478 (3) 0.46142 (3) 0.23256 (2) 0.02000 (8)
Cl2 1.05575 (2) 0.57074 (3) 0.26583 (2) 0.01803 (8)
O1 0.98159 (7) 0.37354 (9) 0.37625 (7) 0.0192 (2)
N1 0.87369 (9) 0.52146 (10) 0.46665 (8) 0.0162 (3)
N2 0.83315 (8) 0.68754 (10) 0.35360 (8) 0.0139 (2)
N3 0.88695 (9) 0.83051 (10) 0.22922 (8) 0.0149 (2)
H3A 0.8533 (12) 0.8859 (13) 0.2359 (11) 0.022*
H3B 0.9244 (12) 0.8437 (16) 0.1887 (11) 0.022*
C1 0.95272 (10) 0.31114 (12) 0.43163 (9) 0.0169 (3)
C2 0.96780 (11) 0.20498 (12) 0.42363 (10) 0.0195 (3)
H2 0.9967 0.1802 0.3765 0.023*
C3 0.94174 (11) 0.13662 (13) 0.48221 (10) 0.0220 (3)
H3 0.9523 0.0660 0.4742 0.026*
C4 0.90004 (11) 0.16929 (13) 0.55317 (10) 0.0213 (3)
H4 0.8837 0.1221 0.5940 0.026*
C5 0.88317 (10) 0.27220 (13) 0.56245 (9) 0.0194 (3)
H5 0.8550 0.2953 0.6105 0.023*
C6 0.90643 (10) 0.34411 (12) 0.50271 (9) 0.0167 (3)
C7 0.87494 (10) 0.44702 (13) 0.51703 (9) 0.0172 (3)
H7 0.8527 0.4611 0.5695 0.021*
C8 0.83000 (10) 0.61616 (12) 0.49269 (9) 0.0178 (3)
H8A 0.8766 0.6657 0.5100 0.021*
H8B 0.7895 0.6024 0.5389 0.021*
C9 0.77532 (10) 0.66006 (12) 0.42318 (9) 0.0172 (3)
H9A 0.7296 0.6095 0.4058 0.021*
H9B 0.7426 0.7214 0.4419 0.021*
C10 0.88602 (10) 0.77994 (12) 0.37278 (9) 0.0164 (3)
H10A 0.9254 0.7662 0.4198 0.020*
H10B 0.8440 0.8357 0.3874 0.020*
C11 0.94408 (10) 0.81319 (12) 0.30220 (9) 0.0158 (3)
H11A 0.9765 0.8768 0.3162 0.019*
H11B 0.9899 0.7602 0.2906 0.019*
C12 0.82875 (10) 0.74064 (12) 0.21146 (9) 0.0166 (3)
H12A 0.8674 0.6825 0.1954 0.020*
H12B 0.7878 0.7567 0.1660 0.020*
C13 0.77292 (10) 0.71146 (12) 0.28467 (9) 0.0158 (3)
H13A 0.7321 0.7684 0.2992 0.019*
H13B 0.7350 0.6514 0.2719 0.019*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cd1 0.01279 (7) 0.01314 (7) 0.01412 (7) 0.00111 (4) 0.00214 (4) 0.00129 (4)
Cl1 0.01838 (18) 0.01817 (18) 0.02346 (19) −0.00298 (14) −0.00124 (14) −0.00369 (14)
Cl2 0.01453 (16) 0.01461 (17) 0.02495 (19) −0.00003 (13) 0.00517 (14) 0.00176 (14)
O1 0.0201 (5) 0.0189 (5) 0.0186 (5) 0.0057 (4) 0.0045 (4) 0.0040 (4)
N1 0.0132 (6) 0.0189 (7) 0.0164 (6) 0.0015 (5) 0.0010 (5) −0.0002 (5)
N2 0.0117 (6) 0.0146 (6) 0.0153 (6) −0.0007 (5) 0.0005 (5) 0.0009 (5)
N3 0.0153 (6) 0.0127 (6) 0.0166 (6) −0.0006 (5) 0.0005 (5) 0.0007 (5)
C1 0.0134 (7) 0.0180 (7) 0.0192 (7) 0.0003 (6) −0.0030 (6) 0.0024 (6)
C2 0.0174 (7) 0.0190 (8) 0.0222 (8) 0.0013 (6) −0.0020 (6) 0.0017 (6)
C3 0.0178 (7) 0.0175 (8) 0.0306 (9) −0.0017 (6) −0.0083 (6) 0.0054 (7)
C4 0.0167 (7) 0.0244 (8) 0.0229 (8) −0.0052 (6) −0.0065 (6) 0.0098 (7)
C5 0.0147 (7) 0.0273 (8) 0.0161 (7) −0.0045 (6) −0.0034 (6) 0.0050 (6)
C6 0.0143 (7) 0.0198 (8) 0.0158 (7) −0.0019 (6) −0.0024 (6) 0.0034 (6)
C7 0.0128 (7) 0.0241 (8) 0.0147 (7) −0.0013 (6) 0.0000 (5) 0.0003 (6)
C8 0.0183 (7) 0.0195 (7) 0.0156 (7) 0.0017 (6) 0.0035 (6) −0.0006 (6)
C9 0.0139 (7) 0.0179 (7) 0.0198 (7) 0.0011 (6) 0.0040 (6) 0.0009 (6)
C10 0.0153 (7) 0.0168 (7) 0.0172 (7) −0.0021 (6) 0.0004 (6) −0.0023 (6)
C11 0.0139 (7) 0.0155 (7) 0.0179 (7) −0.0019 (6) −0.0009 (6) 0.0003 (6)
C12 0.0164 (7) 0.0157 (7) 0.0177 (7) −0.0023 (6) −0.0025 (6) −0.0004 (6)
C13 0.0124 (7) 0.0157 (7) 0.0192 (7) −0.0007 (5) −0.0020 (6) 0.0009 (6)

Geometric parameters (Å, °)

Cd1—N1 2.2693 (13) C4—C5 1.384 (2)
Cd1—O1 2.2740 (11) C4—H4 0.9500
Cd1—Cl2 2.4557 (4) C5—C6 1.413 (2)
Cd1—Cl1 2.4904 (4) C5—H5 0.9500
Cd1—N2 2.5209 (13) C6—C7 1.450 (2)
O1—C1 1.3042 (19) C7—H7 0.9500
N1—C7 1.288 (2) C8—C9 1.522 (2)
N1—C8 1.4667 (19) C8—H8A 0.9900
N2—C10 1.4779 (19) C8—H8B 0.9900
N2—C9 1.4816 (19) C9—H9A 0.9900
N2—C13 1.4833 (19) C9—H9B 0.9900
N3—C12 1.4897 (19) C10—C11 1.517 (2)
N3—C11 1.4943 (19) C10—H10A 0.9900
N3—H3A 0.889 (15) C10—H10B 0.9900
N3—H3B 0.887 (15) C11—H11A 0.9900
C1—C2 1.419 (2) C11—H11B 0.9900
C1—C6 1.432 (2) C12—C13 1.518 (2)
C2—C3 1.379 (2) C12—H12A 0.9900
C2—H2 0.9500 C12—H12B 0.9900
C3—C4 1.398 (3) C13—H13A 0.9900
C3—H3 0.9500 C13—H13B 0.9900
N1—Cd1—O1 80.22 (4) C5—C6—C7 115.51 (14)
N1—Cd1—Cl2 132.92 (3) C1—C6—C7 124.80 (14)
O1—Cd1—Cl2 90.39 (3) N1—C7—C6 127.33 (14)
N1—Cd1—Cl1 118.77 (3) N1—C7—H7 116.3
O1—Cd1—Cl1 102.57 (3) C6—C7—H7 116.3
Cl2—Cd1—Cl1 108.309 (15) N1—C8—C9 109.30 (12)
N1—Cd1—N2 75.55 (4) N1—C8—H8A 109.8
O1—Cd1—N2 155.52 (4) C9—C8—H8A 109.8
Cl2—Cd1—N2 103.45 (3) N1—C8—H8B 109.8
Cl1—Cd1—N2 92.25 (3) C9—C8—H8B 109.8
C1—O1—Cd1 127.43 (9) H8A—C8—H8B 108.3
C7—N1—C8 117.32 (13) N2—C9—C8 112.31 (12)
C7—N1—Cd1 128.33 (11) N2—C9—H9A 109.1
C8—N1—Cd1 113.90 (9) C8—C9—H9A 109.1
C10—N2—C9 109.61 (12) N2—C9—H9B 109.1
C10—N2—C13 107.97 (12) C8—C9—H9B 109.1
C9—N2—C13 108.04 (11) H9A—C9—H9B 107.9
C10—N2—Cd1 118.96 (9) N2—C10—C11 111.59 (12)
C9—N2—Cd1 99.25 (9) N2—C10—H10A 109.3
C13—N2—Cd1 112.30 (9) C11—C10—H10A 109.3
C12—N3—C11 111.41 (12) N2—C10—H10B 109.3
C12—N3—H3A 110.6 (13) C11—C10—H10B 109.3
C11—N3—H3A 109.8 (12) H10A—C10—H10B 108.0
C12—N3—H3B 111.3 (14) N3—C11—C10 110.68 (12)
C11—N3—H3B 107.1 (13) N3—C11—H11A 109.5
H3A—N3—H3B 106.4 (19) C10—C11—H11A 109.5
O1—C1—C2 120.06 (14) N3—C11—H11B 109.5
O1—C1—C6 123.22 (14) C10—C11—H11B 109.5
C2—C1—C6 116.72 (14) H11A—C11—H11B 108.1
C3—C2—C1 122.04 (16) N3—C12—C13 110.73 (12)
C3—C2—H2 119.0 N3—C12—H12A 109.5
C1—C2—H2 119.0 C13—C12—H12A 109.5
C2—C3—C4 121.21 (16) N3—C12—H12B 109.5
C2—C3—H3 119.4 C13—C12—H12B 109.5
C4—C3—H3 119.4 H12A—C12—H12B 108.1
C5—C4—C3 118.25 (15) N2—C13—C12 110.34 (12)
C5—C4—H4 120.9 N2—C13—H13A 109.6
C3—C4—H4 120.9 C12—C13—H13A 109.6
C4—C5—C6 122.12 (15) N2—C13—H13B 109.6
C4—C5—H5 118.9 C12—C13—H13B 109.6
C6—C5—H5 118.9 H13A—C13—H13B 108.1
C5—C6—C1 119.56 (15)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N3—H3A···Cl1i 0.89 (2) 2.53 (2) 3.3108 (14) 146.(2)
N3—H3A···Cl2ii 0.89 (2) 2.78 (2) 3.2689 (14) 116.(2)
N3—H3B···O1ii 0.89 (2) 1.80 (2) 2.6743 (17) 167.(2)
C11—H11B···Cl2 0.99 2.70 3.6372 (16) 157.
C13—H13B···Cl1 0.99 2.78 3.4302 (16) 124.
C4—H4···Cl1iii 0.95 2.80 3.7165 (17) 161.
C13—H13A···Cl1i 0.99 2.82 3.5851 (16) 134.

Symmetry codes: (i) −x+3/2, y+1/2, z; (ii) −x+2, y+1/2, −z+1/2; (iii) x, −y+1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PV2318).

References

  1. Barbour, L. J. (2001). J. Supramol. Chem.1, 189–191.
  2. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Mukhopadhyay, S., Mandal, D., Ghosh, D., Goldberg, I. & Chaudhury, M. (2003). Inorg. Chem.42, 8439–8445. [DOI] [PubMed]
  4. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Westrip, S. P. (2010). J. Appl. Cryst.43, 920–925.
  7. Xu, R. B., Xu, X. Y., Wang, M. Y., Wang, D. Q., Yin, T., Xu, G. X., Yang, X. J., Lu, L. D., Wang, X. & Lei, Y. J. (2008). J. Coord. Chem.61, 3306–3313.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810032563/pv2318sup1.cif

e-66-m1131-sup1.cif (18KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810032563/pv2318Isup2.hkl

e-66-m1131-Isup2.hkl (181.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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