Abstract
In the crystal structure of the title compound, C8H9N2 +·SCN−·C8H8N2, the three components are linked by intermolecular N—H⋯N and N—H⋯S hydrogen bonds into infinite chains along the c axis.
Related literature
For related structures, see: Bhattacharya et al. (2004 ▶); Ding et al. (2004 ▶); Huang et al. (2006 ▶). For applications of benzimidazole derivatives in crystal engineering, see: Cai et al. (2002 ▶). For the biological properties of benzimidazole derivatives, see: Refaat (2010 ▶); Ansari & Lal (2009 ▶).
Experimental
Crystal data
C8H9N2 +·SCN−·C8H8N2
M r = 323.42
Monoclinic,
a = 11.0952 (7) Å
b = 6.9664 (4) Å
c = 21.4195 (13) Å
β = 100.745 (1)°
V = 1626.56 (17) Å3
Z = 4
Mo Kα radiation
μ = 0.21 mm−1
T = 100 K
0.25 × 0.25 × 0.06 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.950, T max = 0.988
8812 measured reflections
3193 independent reflections
2427 reflections with I > 2σ(I)
R int = 0.037
Refinement
R[F 2 > 2σ(F 2)] = 0.039
wR(F 2) = 0.093
S = 1.03
3193 reflections
222 parameters
3 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.20 e Å−3
Δρmin = −0.28 e Å−3
Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810031181/pv2314sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810031181/pv2314Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1N⋯N5 | 0.90 (2) | 1.90 (2) | 2.799 (2) | 176 (2) |
| N2—H2N⋯N4i | 0.90 (2) | 1.88 (2) | 2.781 (2) | 179 (2) |
| N3—H3N⋯S1 | 0.86 (2) | 2.47 (2) | 3.317 (2) | 168 (2) |
Symmetry code: (i)
.
Acknowledgments
The authors thank the University of Malaya for funding this study (FRGS grant FP009/2008 C).
supplementary crystallographic information
Comment
Benzimidazole derivatives are biologically active compounds (Refaat, 2010; Ansari & Lal, 2009). Their applications in crystal-engineering have been reported (Cai et al., 2002). The crystal structures of several compounds similar to the title compound have been publsihed (Bhattacharya et al., 2004; Ding et al., 2004; Huang et al., 2006. In this article, the preparation and crystal structure of the title compound is presented.
The asymmetric unit of the title compound contains a 2-methylbenzimidazolium cation, a thiocyante anion and a molecule of 2-methylbenzimidazole (Fig. 1). In the crystal structure, the three moieties are linked by intramolecular N—H···N and N—H···S hydrogen bondings into infinite one-dimensional chains (Tab. 1 & Fig. 2).
Experimental
An ethanolic solution (12 ml) of 2-methylbenzimidazole (9 mmol, 1.2 g) was added to an aqueous solution (10 ml) of FeCl3 (3 mmol) followed by addition of an aqueous solution (10 ml) of KSCN (9 mmol). The mixture was heated in a water bath for 15 min. The resulting precipitates were filtered off, washed with ethanol (50%) and recrystallized from ethanol whereupon the pale yellow crystals of the title compound were obtained unexpectedly.
Refinement
The C-bound hydrogen atoms were placed at calculated positions (C—H 0.95 - 0.98 Å) and were treated as riding on their parent atoms with Uiso(H) set to 1.2–1.5 Ueq(C). The N-bound hydrogen atoms were located in a difference Fourier map and were refined with a distance restraint of N—H 0.88 (2) Å.
Figures
Fig. 1.
Thermal ellipsoid plot of the title compound at the 50% probability level. Hydrogen atoms are drawn as spheres of arbitrary radius.
Fig. 2.
A view of the hydrogen bonding interactions as viewed down b. Symmetry code: i = x + 1/2, -y + 1/2, z - 1/2.
Crystal data
| C8H9N2+·SCN−·C8H8N2 | F(000) = 680 |
| Mr = 323.42 | Dx = 1.321 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 1739 reflections |
| a = 11.0952 (7) Å | θ = 2.3–25.1° |
| b = 6.9664 (4) Å | µ = 0.21 mm−1 |
| c = 21.4195 (13) Å | T = 100 K |
| β = 100.745 (1)° | Plate, yellow |
| V = 1626.56 (17) Å3 | 0.25 × 0.25 × 0.06 mm |
| Z = 4 |
Data collection
| Bruker APEXII CCD diffractometer | 3193 independent reflections |
| Radiation source: fine-focus sealed tube | 2427 reflections with I > 2σ(I) |
| graphite | Rint = 0.037 |
| φ and ω scans | θmax = 26.0°, θmin = 1.9° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −13→13 |
| Tmin = 0.950, Tmax = 0.988 | k = −7→8 |
| 8812 measured reflections | l = −26→26 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.093 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.03 | w = 1/[σ2(Fo2) + (0.035P)2 + 0.6349P] where P = (Fo2 + 2Fc2)/3 |
| 3193 reflections | (Δ/σ)max < 0.001 |
| 222 parameters | Δρmax = 0.20 e Å−3 |
| 3 restraints | Δρmin = −0.28 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.76009 (14) | 0.1676 (2) | 0.43464 (7) | 0.0183 (4) | |
| H1N | 0.7853 (18) | 0.196 (3) | 0.4761 (8) | 0.033 (6)* | |
| N2 | 0.76652 (13) | 0.1089 (2) | 0.33548 (7) | 0.0169 (3) | |
| H2N | 0.7976 (19) | 0.090 (3) | 0.2999 (8) | 0.038 (7)* | |
| C1 | 0.96598 (16) | 0.1988 (3) | 0.40543 (9) | 0.0233 (4) | |
| H1A | 1.0105 | 0.0784 | 0.4165 | 0.035* | |
| H1B | 0.9851 | 0.2889 | 0.4410 | 0.035* | |
| H1C | 0.9908 | 0.2546 | 0.3678 | 0.035* | |
| C2 | 0.83267 (16) | 0.1602 (3) | 0.39179 (8) | 0.0174 (4) | |
| C3 | 0.64561 (16) | 0.0800 (3) | 0.34260 (9) | 0.0170 (4) | |
| C4 | 0.54091 (16) | 0.0242 (3) | 0.29996 (9) | 0.0198 (4) | |
| H4 | 0.5429 | −0.0024 | 0.2567 | 0.024* | |
| C5 | 0.43398 (17) | 0.0096 (3) | 0.32393 (10) | 0.0244 (5) | |
| H5 | 0.3608 | −0.0290 | 0.2963 | 0.029* | |
| C6 | 0.43008 (17) | 0.0498 (3) | 0.38747 (10) | 0.0262 (5) | |
| H6 | 0.3545 | 0.0381 | 0.4019 | 0.031* | |
| C7 | 0.53387 (17) | 0.1064 (3) | 0.42968 (10) | 0.0227 (4) | |
| H7 | 0.5317 | 0.1352 | 0.4728 | 0.027* | |
| C8 | 0.64148 (16) | 0.1190 (3) | 0.40569 (9) | 0.0173 (4) | |
| N3 | 0.49936 (14) | 0.4693 (2) | 0.66246 (7) | 0.0179 (3) | |
| H3N | 0.5709 (14) | 0.483 (3) | 0.6527 (9) | 0.022 (5)* | |
| N4 | 0.36143 (13) | 0.4455 (2) | 0.72545 (7) | 0.0175 (3) | |
| C9 | 0.57509 (16) | 0.5348 (3) | 0.77709 (9) | 0.0236 (4) | |
| H9A | 0.5377 | 0.5843 | 0.8119 | 0.035* | |
| H9B | 0.6283 | 0.6334 | 0.7640 | 0.035* | |
| H9C | 0.6239 | 0.4205 | 0.7915 | 0.035* | |
| C10 | 0.47689 (16) | 0.4834 (3) | 0.72223 (9) | 0.0174 (4) | |
| C11 | 0.39134 (16) | 0.4178 (3) | 0.62290 (9) | 0.0173 (4) | |
| C12 | 0.36142 (17) | 0.3839 (3) | 0.55802 (9) | 0.0212 (4) | |
| H12 | 0.4209 | 0.3944 | 0.5315 | 0.025* | |
| C13 | 0.24092 (18) | 0.3343 (3) | 0.53365 (9) | 0.0235 (4) | |
| H13 | 0.2171 | 0.3092 | 0.4895 | 0.028* | |
| C14 | 0.15347 (18) | 0.3204 (3) | 0.57299 (9) | 0.0239 (4) | |
| H14 | 0.0715 | 0.2865 | 0.5549 | 0.029* | |
| C15 | 0.18384 (16) | 0.3548 (3) | 0.63752 (9) | 0.0204 (4) | |
| H15 | 0.1240 | 0.3455 | 0.6638 | 0.024* | |
| C16 | 0.30494 (16) | 0.4037 (3) | 0.66294 (8) | 0.0167 (4) | |
| S1 | 0.79070 (4) | 0.52630 (8) | 0.64995 (2) | 0.02656 (15) | |
| N5 | 0.83250 (16) | 0.2375 (3) | 0.56491 (8) | 0.0283 (4) | |
| C17 | 0.81466 (16) | 0.3567 (3) | 0.60007 (9) | 0.0208 (4) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0217 (8) | 0.0189 (9) | 0.0143 (8) | 0.0006 (7) | 0.0030 (6) | −0.0004 (7) |
| N2 | 0.0162 (8) | 0.0193 (9) | 0.0156 (8) | 0.0004 (6) | 0.0041 (6) | −0.0006 (7) |
| C1 | 0.0184 (10) | 0.0266 (12) | 0.0237 (10) | 0.0000 (8) | 0.0006 (8) | −0.0034 (9) |
| C2 | 0.0200 (9) | 0.0152 (10) | 0.0169 (9) | 0.0024 (7) | 0.0029 (7) | 0.0009 (8) |
| C3 | 0.0186 (9) | 0.0132 (10) | 0.0198 (10) | 0.0019 (7) | 0.0051 (7) | 0.0022 (8) |
| C4 | 0.0197 (9) | 0.0175 (10) | 0.0210 (10) | 0.0005 (8) | 0.0008 (7) | 0.0007 (9) |
| C5 | 0.0181 (9) | 0.0196 (11) | 0.0343 (12) | −0.0004 (8) | 0.0016 (8) | 0.0046 (9) |
| C6 | 0.0213 (10) | 0.0226 (11) | 0.0380 (12) | 0.0022 (8) | 0.0145 (9) | 0.0068 (10) |
| C7 | 0.0283 (11) | 0.0180 (11) | 0.0248 (10) | 0.0030 (8) | 0.0125 (8) | 0.0040 (9) |
| C8 | 0.0197 (9) | 0.0115 (10) | 0.0207 (10) | 0.0015 (7) | 0.0043 (7) | 0.0028 (8) |
| N3 | 0.0143 (8) | 0.0202 (9) | 0.0205 (8) | 0.0002 (7) | 0.0063 (6) | 0.0005 (7) |
| N4 | 0.0178 (8) | 0.0181 (9) | 0.0165 (8) | −0.0002 (6) | 0.0031 (6) | 0.0013 (7) |
| C9 | 0.0197 (10) | 0.0262 (11) | 0.0242 (10) | −0.0011 (8) | 0.0021 (8) | −0.0001 (9) |
| C10 | 0.0180 (9) | 0.0149 (10) | 0.0193 (9) | 0.0001 (7) | 0.0032 (7) | −0.0002 (8) |
| C11 | 0.0192 (9) | 0.0131 (10) | 0.0193 (9) | 0.0011 (7) | 0.0027 (7) | 0.0009 (8) |
| C12 | 0.0291 (10) | 0.0159 (10) | 0.0201 (10) | 0.0016 (8) | 0.0083 (8) | 0.0022 (8) |
| C13 | 0.0328 (11) | 0.0177 (11) | 0.0177 (10) | −0.0005 (9) | −0.0011 (8) | 0.0000 (9) |
| C14 | 0.0230 (10) | 0.0202 (11) | 0.0258 (11) | −0.0027 (8) | −0.0018 (8) | 0.0027 (9) |
| C15 | 0.0182 (9) | 0.0188 (11) | 0.0240 (10) | −0.0017 (8) | 0.0032 (8) | 0.0029 (9) |
| C16 | 0.0213 (9) | 0.0126 (9) | 0.0159 (9) | 0.0023 (7) | 0.0025 (7) | 0.0027 (8) |
| S1 | 0.0226 (3) | 0.0293 (3) | 0.0296 (3) | −0.0040 (2) | 0.0095 (2) | −0.0066 (2) |
| N5 | 0.0336 (10) | 0.0324 (11) | 0.0184 (9) | 0.0026 (8) | 0.0033 (7) | −0.0006 (8) |
| C17 | 0.0166 (9) | 0.0285 (12) | 0.0165 (9) | −0.0007 (8) | 0.0010 (7) | 0.0060 (9) |
Geometric parameters (Å, °)
| N1—C2 | 1.330 (2) | N3—C11 | 1.380 (2) |
| N1—C8 | 1.388 (2) | N3—H3N | 0.862 (15) |
| N1—H1N | 0.901 (15) | N4—C10 | 1.322 (2) |
| N2—C2 | 1.338 (2) | N4—C16 | 1.399 (2) |
| N2—C3 | 1.393 (2) | C9—C10 | 1.489 (2) |
| N2—H2N | 0.902 (15) | C9—H9A | 0.9800 |
| C1—C2 | 1.478 (2) | C9—H9B | 0.9800 |
| C1—H1A | 0.9800 | C9—H9C | 0.9800 |
| C1—H1B | 0.9800 | C11—C12 | 1.387 (3) |
| C1—H1C | 0.9800 | C11—C16 | 1.404 (3) |
| C3—C8 | 1.387 (2) | C12—C13 | 1.385 (3) |
| C3—C4 | 1.392 (2) | C12—H12 | 0.9500 |
| C4—C5 | 1.381 (3) | C13—C14 | 1.402 (3) |
| C4—H4 | 0.9500 | C13—H13 | 0.9500 |
| C5—C6 | 1.398 (3) | C14—C15 | 1.381 (3) |
| C5—H5 | 0.9500 | C14—H14 | 0.9500 |
| C6—C7 | 1.382 (3) | C15—C16 | 1.395 (2) |
| C6—H6 | 0.9500 | C15—H15 | 0.9500 |
| C7—C8 | 1.388 (3) | S1—C17 | 1.647 (2) |
| C7—H7 | 0.9500 | N5—C17 | 1.163 (2) |
| N3—C10 | 1.353 (2) | ||
| C2—N1—C8 | 109.14 (15) | C10—N3—C11 | 107.93 (15) |
| C2—N1—H1N | 124.9 (13) | C10—N3—H3N | 124.1 (13) |
| C8—N1—H1N | 125.9 (13) | C11—N3—H3N | 127.8 (13) |
| C2—N2—C3 | 108.51 (15) | C10—N4—C16 | 104.90 (15) |
| C2—N2—H2N | 124.6 (14) | C10—C9—H9A | 109.5 |
| C3—N2—H2N | 126.8 (14) | C10—C9—H9B | 109.5 |
| C2—C1—H1A | 109.5 | H9A—C9—H9B | 109.5 |
| C2—C1—H1B | 109.5 | C10—C9—H9C | 109.5 |
| H1A—C1—H1B | 109.5 | H9A—C9—H9C | 109.5 |
| C2—C1—H1C | 109.5 | H9B—C9—H9C | 109.5 |
| H1A—C1—H1C | 109.5 | N4—C10—N3 | 112.71 (15) |
| H1B—C1—H1C | 109.5 | N4—C10—C9 | 125.46 (17) |
| N1—C2—N2 | 109.35 (15) | N3—C10—C9 | 121.82 (16) |
| N1—C2—C1 | 124.67 (16) | N3—C11—C12 | 132.64 (17) |
| N2—C2—C1 | 125.96 (17) | N3—C11—C16 | 104.88 (16) |
| C8—C3—C4 | 121.23 (17) | C12—C11—C16 | 122.48 (17) |
| C8—C3—N2 | 106.61 (15) | C13—C12—C11 | 116.98 (17) |
| C4—C3—N2 | 132.17 (17) | C13—C12—H12 | 121.5 |
| C5—C4—C3 | 116.49 (18) | C11—C12—H12 | 121.5 |
| C5—C4—H4 | 121.8 | C12—C13—C14 | 121.20 (18) |
| C3—C4—H4 | 121.8 | C12—C13—H13 | 119.4 |
| C4—C5—C6 | 122.11 (18) | C14—C13—H13 | 119.4 |
| C4—C5—H5 | 118.9 | C15—C14—C13 | 121.49 (18) |
| C6—C5—H5 | 118.9 | C15—C14—H14 | 119.3 |
| C7—C6—C5 | 121.38 (18) | C13—C14—H14 | 119.3 |
| C7—C6—H6 | 119.3 | C14—C15—C16 | 118.08 (17) |
| C5—C6—H6 | 119.3 | C14—C15—H15 | 121.0 |
| C6—C7—C8 | 116.43 (18) | C16—C15—H15 | 121.0 |
| C6—C7—H7 | 121.8 | C15—C16—N4 | 130.66 (17) |
| C8—C7—H7 | 121.8 | C15—C16—C11 | 119.76 (17) |
| C3—C8—C7 | 122.36 (17) | N4—C16—C11 | 109.58 (15) |
| C3—C8—N1 | 106.39 (15) | N5—C17—S1 | 179.47 (18) |
| C7—C8—N1 | 131.25 (18) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1N···N5 | 0.90 (2) | 1.90 (2) | 2.799 (2) | 176 (2) |
| N2—H2N···N4i | 0.90 (2) | 1.88 (2) | 2.781 (2) | 179 (2) |
| N3—H3N···S1 | 0.86 (2) | 2.47 (2) | 3.317 (2) | 168 (2) |
Symmetry codes: (i) x+1/2, −y+1/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PV2314).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810031181/pv2314sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810031181/pv2314Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


