Abstract
In the title compound, C13H10ClN3O3, prepared by the reaction of 1-chloro-3-isocyanatobenzene with 4-nitrobenzenamine, the two substituent benzene rings are roughly coplanar [inter-ring dihedral angle = 8.70 (7)°]. In the crystal, molecules make cyclic intermolecular associations through two urea–nitro N—H⋯O hydrogen bonds, forming a chain structure [give chain direction] in which there are also weak intermolecular C—H⋯Cl interactions. The urea O atom has only intramolecular aromatic ring C—H⋯O associations.
Related literature
For the bioactivity of urea derivatives, see: Wang et al. (2001 ▶); Song et al. (2008 ▶); Yip et al. (1986 ▶); Liu et al. (2005 ▶).
Experimental
Crystal data
C13H10ClN3O3
M r = 291.69
Monoclinic,
a = 8.3410 (13) Å
b = 12.5410 (18) Å
c = 12.1120 (16) Å
β = 99.866 (5)°
V = 1248.2 (3) Å3
Z = 4
Mo Kα radiation
μ = 0.32 mm−1
T = 113 K
0.24 × 0.22 × 0.20 mm
Data collection
Rigaku Saturn724 CCD diffractometer
Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2009 ▶) T min = 0.928, T max = 0.939
15672 measured reflections
2964 independent reflections
2396 reflections with I > 2σ(I)
R int = 0.041
Refinement
R[F 2 > 2σ(F 2)] = 0.033
wR(F 2) = 0.092
S = 1.04
2964 reflections
189 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.41 e Å−3
Δρmin = −0.24 e Å−3
Data collection: CrystalClear-SM Expert (Rigaku, 2009 ▶); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: CrystalStructure (Rigaku, 2009 ▶); software used to prepare material for publication: CrystalStructure.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810040201/zs2070sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810040201/zs2070Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1⋯O3i | 0.807 (16) | 2.211 (16) | 3.0131 (14) | 172.8 (16) |
| N2—H2⋯O2i | 0.832 (14) | 2.136 (14) | 2.9448 (14) | 164.1 (14) |
| C3—H3⋯O1 | 0.95 | 2.26 | 2.8720 (15) | 121 |
| C9—H9⋯O1 | 0.95 | 2.31 | 2.8833 (15) | 118 |
| C12—H12⋯Cl1ii | 0.95 | 2.83 | 3.5465 (13) | 133 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
This work was supported by the Natural Science Foundation of Henan Province, China (grant No. 082300420110) and the Natural Science Foundation of Henan Province Education Department, China (grant No. 2007150036).
supplementary crystallographic information
Comment
Previous studies have shown that urea derivatives have important medical and biological applications, e.g. N, N'-diarylurea derivatives have cytokinin activity (Wang et al., 2001) and bacteriostatic activity. Compounds bearing a urea linkage to benzothiazole were also investigated for their ability to inhibit Raf-1 activity (Song et al.. 2008). Thidiazuron, a substituted heterocyclic urea compound, mimicked the effect of benzyladenine (BA) in the Ca2+ and cytokinin systems or on the IAA and cytokinin systems (Yip et al.. 1986). Recently, better activity was achieved with benzoyl urea derivatives (Liu et al.. 2005). In order to discover further biologically active urea compounds, the title compound C13H10ClN3O3 (I) was synthesized and its crystal structure is reported here.
In the structure of title compound (Fig. 1), the molecule is almost planar [torsion angles C1–N1–C2–C7 and C1–N2–C8–C13, 178.39 (11)° and -165.69 (11)°] with a dihedral angle between two phenyl rings of 8.70 (7)°. In the crystal structure, the molecules give cyclic intermolecular associations through two urea N–H···Onitro hydrogen bonds (Table 1) giving a one-dimensional chain structure (Fig. 2) in which there are also weak intermolecular C—H···Cl interactions [C12–H12···Cl1iii, 3.5465 (13) Å] [symmetry code (iii): x, y + 1, z]. The urea O atom has only intramolecular aromatic ring C–H···O associations [C3–H3···O1, 2.8720 (15) Å; C9–H9···O1, 2.8833 (15) Å].
Experimental
1-Chloro-3-isocyanatobenzene (0.153 g, 1 mmol) and 4-nitrobenzenamine (0.138 g, 1 mmol) were mixed and ground in an agate mortar, then irradiated by microwave for 1 min. After the reaction was completed, the resulting product was dissolved in 95% ethanol with warming and immediately filtered. The product obtained was recrystallized from ethanol and single crystals of the title compound were obtained by slow evaporation.
Refinement
The urea H atoms were located by difference methods and their positional and isotropic displacement parameters were refined. Other H atoms were placed in calculated positions, with C—H = 0.95 Å, and included in the final cycles of refinement using a riding model, with Uiso(H) = 1.2Ueq(C).
Figures
Fig. 1.
Molecular conformation and atom numbering scheme for the title compound, with displacement ellipsoids drawn at the 30% probability level.
Fig. 2.
The packing diagram of the title compound. Intermolecular hydrogen bonds are shown as dashed lines.
Crystal data
| C13H10ClN3O3 | F(000) = 600 |
| Mr = 291.69 | Dx = 1.552 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71075 Å |
| Hall symbol: -P 2yn | Cell parameters from 4351 reflections |
| a = 8.3410 (13) Å | θ = 1.6–27.9° |
| b = 12.5410 (18) Å | µ = 0.32 mm−1 |
| c = 12.1120 (16) Å | T = 113 K |
| β = 99.866 (5)° | Prism, colorless |
| V = 1248.2 (3) Å3 | 0.24 × 0.22 × 0.20 mm |
| Z = 4 |
Data collection
| Rigaku Saturn724 CCD diffractometer | 2964 independent reflections |
| Radiation source: rotating anode | 2396 reflections with I > 2σ(I) |
| multilayer | Rint = 0.041 |
| Detector resolution: 14.222 pixels mm-1 | θmax = 27.9°, θmin = 2.4° |
| ω scans | h = −10→10 |
| Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2009) | k = −16→16 |
| Tmin = 0.928, Tmax = 0.939 | l = −15→15 |
| 15672 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.092 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.04 | w = 1/[σ2(Fo2) + (0.0589P)2] where P = (Fo2 + 2Fc2)/3 |
| 2964 reflections | (Δ/σ)max = 0.001 |
| 189 parameters | Δρmax = 0.41 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cl1 | 0.22721 (4) | 0.01383 (3) | 0.53821 (3) | 0.02970 (12) | |
| O1 | 0.31522 (10) | 0.39764 (6) | 0.45111 (7) | 0.0187 (2) | |
| O2 | 0.55192 (10) | 0.80112 (7) | 0.13369 (7) | 0.0218 (2) | |
| O3 | 0.49009 (10) | 0.93629 (7) | 0.22967 (7) | 0.0221 (2) | |
| N1 | 0.17484 (13) | 0.41897 (8) | 0.59747 (9) | 0.0177 (2) | |
| N2 | 0.23742 (12) | 0.56468 (8) | 0.50077 (9) | 0.0171 (2) | |
| N3 | 0.49071 (11) | 0.83930 (8) | 0.21073 (8) | 0.0173 (2) | |
| C1 | 0.24839 (13) | 0.45459 (9) | 0.51100 (10) | 0.0152 (2) | |
| C2 | 0.15298 (14) | 0.31274 (9) | 0.62949 (10) | 0.0153 (2) | |
| C3 | 0.20047 (14) | 0.22475 (9) | 0.57217 (10) | 0.0175 (3) | |
| H3 | 0.2525 | 0.2338 | 0.5089 | 0.021* | |
| C4 | 0.16951 (15) | 0.12397 (9) | 0.61013 (10) | 0.0191 (3) | |
| C5 | 0.09396 (15) | 0.10706 (10) | 0.70225 (10) | 0.0205 (3) | |
| H5 | 0.0743 | 0.0369 | 0.7262 | 0.025* | |
| C6 | 0.04799 (14) | 0.19542 (10) | 0.75831 (10) | 0.0198 (3) | |
| H6 | −0.0042 | 0.1858 | 0.8215 | 0.024* | |
| C7 | 0.07749 (14) | 0.29736 (9) | 0.72298 (10) | 0.0175 (3) | |
| H7 | 0.0463 | 0.3573 | 0.7624 | 0.021* | |
| C8 | 0.29852 (14) | 0.62892 (9) | 0.42460 (10) | 0.0151 (2) | |
| C9 | 0.34844 (14) | 0.59016 (9) | 0.32687 (10) | 0.0177 (3) | |
| H9 | 0.3407 | 0.5162 | 0.3096 | 0.021* | |
| C10 | 0.40879 (14) | 0.66018 (10) | 0.25622 (10) | 0.0178 (3) | |
| H10 | 0.4434 | 0.6348 | 0.1903 | 0.021* | |
| C11 | 0.41844 (14) | 0.76771 (9) | 0.28220 (10) | 0.0157 (2) | |
| C12 | 0.36528 (14) | 0.80862 (9) | 0.37613 (10) | 0.0174 (3) | |
| H12 | 0.3702 | 0.8830 | 0.3913 | 0.021* | |
| C13 | 0.30537 (14) | 0.73906 (10) | 0.44672 (10) | 0.0174 (3) | |
| H13 | 0.2681 | 0.7657 | 0.5113 | 0.021* | |
| H1 | 0.1324 (18) | 0.4614 (13) | 0.6334 (14) | 0.035 (5)* | |
| H2 | 0.1933 (16) | 0.5948 (12) | 0.5489 (12) | 0.024 (4)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl1 | 0.0455 (2) | 0.01399 (17) | 0.0309 (2) | 0.00282 (13) | 0.01006 (16) | −0.00398 (12) |
| O1 | 0.0246 (5) | 0.0139 (4) | 0.0200 (4) | 0.0023 (3) | 0.0111 (4) | −0.0004 (3) |
| O2 | 0.0264 (5) | 0.0220 (5) | 0.0196 (4) | −0.0022 (4) | 0.0115 (4) | 0.0009 (4) |
| O3 | 0.0290 (5) | 0.0128 (4) | 0.0259 (5) | −0.0023 (3) | 0.0089 (4) | 0.0026 (3) |
| N1 | 0.0245 (6) | 0.0118 (5) | 0.0195 (5) | 0.0016 (4) | 0.0114 (4) | −0.0003 (4) |
| N2 | 0.0244 (6) | 0.0115 (5) | 0.0182 (5) | 0.0011 (4) | 0.0120 (4) | −0.0003 (4) |
| N3 | 0.0171 (5) | 0.0172 (5) | 0.0178 (5) | −0.0014 (4) | 0.0035 (4) | 0.0030 (4) |
| C1 | 0.0159 (6) | 0.0137 (5) | 0.0164 (5) | −0.0012 (4) | 0.0037 (4) | 0.0008 (4) |
| C2 | 0.0151 (6) | 0.0132 (5) | 0.0173 (6) | −0.0008 (4) | 0.0019 (5) | 0.0017 (4) |
| C3 | 0.0191 (6) | 0.0168 (6) | 0.0171 (6) | 0.0007 (5) | 0.0042 (5) | 0.0000 (5) |
| C4 | 0.0220 (6) | 0.0141 (6) | 0.0202 (6) | 0.0015 (5) | 0.0011 (5) | −0.0023 (5) |
| C5 | 0.0235 (6) | 0.0147 (6) | 0.0228 (6) | −0.0032 (5) | 0.0020 (5) | 0.0037 (5) |
| C6 | 0.0197 (6) | 0.0209 (6) | 0.0192 (6) | −0.0023 (5) | 0.0045 (5) | 0.0043 (5) |
| C7 | 0.0187 (6) | 0.0165 (6) | 0.0179 (6) | 0.0004 (5) | 0.0050 (5) | 0.0009 (4) |
| C8 | 0.0147 (6) | 0.0142 (6) | 0.0171 (5) | −0.0001 (4) | 0.0046 (4) | 0.0016 (4) |
| C9 | 0.0223 (6) | 0.0137 (5) | 0.0181 (6) | −0.0004 (5) | 0.0067 (5) | −0.0010 (4) |
| C10 | 0.0208 (6) | 0.0168 (6) | 0.0172 (6) | 0.0012 (5) | 0.0072 (5) | −0.0006 (5) |
| C11 | 0.0160 (6) | 0.0150 (6) | 0.0168 (6) | −0.0009 (4) | 0.0049 (5) | 0.0034 (4) |
| C12 | 0.0205 (6) | 0.0132 (5) | 0.0194 (6) | −0.0001 (4) | 0.0056 (5) | 0.0000 (4) |
| C13 | 0.0212 (6) | 0.0148 (6) | 0.0176 (6) | 0.0010 (5) | 0.0076 (5) | −0.0010 (4) |
Geometric parameters (Å, °)
| Cl1—C4 | 1.7441 (12) | C5—C6 | 1.3876 (17) |
| O1—C1 | 1.2187 (14) | C5—H5 | 0.9500 |
| O2—N3 | 1.2345 (13) | C6—C7 | 1.3835 (16) |
| O3—N3 | 1.2380 (13) | C6—H6 | 0.9500 |
| N1—C1 | 1.3759 (15) | C7—H7 | 0.9500 |
| N1—C2 | 1.4080 (14) | C8—C13 | 1.4064 (16) |
| N1—H1 | 0.806 (16) | C8—C9 | 1.4070 (15) |
| N2—C8 | 1.3860 (15) | C9—C10 | 1.3800 (16) |
| N2—C1 | 1.3879 (15) | C9—H9 | 0.9500 |
| N2—H2 | 0.832 (14) | C10—C11 | 1.3840 (17) |
| N3—C11 | 1.4483 (14) | C10—H10 | 0.9500 |
| C2—C3 | 1.3968 (16) | C11—C12 | 1.3882 (16) |
| C2—C7 | 1.4001 (16) | C12—C13 | 1.3741 (16) |
| C3—C4 | 1.3842 (16) | C12—H12 | 0.9500 |
| C3—H3 | 0.9500 | C13—H13 | 0.9500 |
| C4—C5 | 1.3885 (16) | ||
| C1—N1—C2 | 127.77 (10) | C7—C6—C5 | 120.52 (11) |
| C1—N1—H1 | 119.4 (12) | C7—C6—H6 | 119.7 |
| C2—N1—H1 | 112.7 (12) | C5—C6—H6 | 119.7 |
| C8—N2—C1 | 127.69 (10) | C6—C7—C2 | 120.39 (11) |
| C8—N2—H2 | 117.4 (10) | C6—C7—H7 | 119.8 |
| C1—N2—H2 | 114.8 (10) | C2—C7—H7 | 119.8 |
| O2—N3—O3 | 122.45 (10) | N2—C8—C13 | 116.84 (10) |
| O2—N3—C11 | 118.67 (10) | N2—C8—C9 | 123.70 (11) |
| O3—N3—C11 | 118.88 (10) | C13—C8—C9 | 119.44 (11) |
| O1—C1—N1 | 124.88 (11) | C10—C9—C8 | 119.59 (11) |
| O1—C1—N2 | 124.04 (11) | C10—C9—H9 | 120.2 |
| N1—C1—N2 | 111.08 (10) | C8—C9—H9 | 120.2 |
| C3—C2—C7 | 119.89 (11) | C9—C10—C11 | 119.48 (11) |
| C3—C2—N1 | 123.33 (11) | C9—C10—H10 | 120.3 |
| C7—C2—N1 | 116.78 (10) | C11—C10—H10 | 120.3 |
| C4—C3—C2 | 118.12 (11) | C10—C11—C12 | 122.16 (11) |
| C4—C3—H3 | 120.9 | C10—C11—N3 | 118.82 (10) |
| C2—C3—H3 | 120.9 | C12—C11—N3 | 119.00 (11) |
| C3—C4—C5 | 122.85 (11) | C13—C12—C11 | 118.46 (11) |
| C3—C4—Cl1 | 118.29 (9) | C13—C12—H12 | 120.8 |
| C5—C4—Cl1 | 118.85 (10) | C11—C12—H12 | 120.8 |
| C6—C5—C4 | 118.22 (11) | C12—C13—C8 | 120.81 (11) |
| C6—C5—H5 | 120.9 | C12—C13—H13 | 119.6 |
| C4—C5—H5 | 120.9 | C8—C13—H13 | 119.6 |
| C2—N1—C1—O1 | −4.21 (19) | C1—N2—C8—C13 | −165.69 (11) |
| C2—N1—C1—N2 | 176.06 (11) | C1—N2—C8—C9 | 16.15 (18) |
| C8—N2—C1—O1 | −0.55 (19) | N2—C8—C9—C10 | −179.59 (11) |
| C8—N2—C1—N1 | 179.19 (11) | C13—C8—C9—C10 | 2.29 (17) |
| C1—N1—C2—C3 | −2.48 (19) | C8—C9—C10—C11 | −0.37 (17) |
| C1—N1—C2—C7 | 178.39 (11) | C9—C10—C11—C12 | −1.71 (18) |
| C7—C2—C3—C4 | 0.46 (17) | C9—C10—C11—N3 | 176.47 (10) |
| N1—C2—C3—C4 | −178.64 (11) | O2—N3—C11—C10 | −5.16 (16) |
| C2—C3—C4—C5 | −0.09 (18) | O3—N3—C11—C10 | 175.45 (10) |
| C2—C3—C4—Cl1 | 179.53 (9) | O2—N3—C11—C12 | 173.09 (10) |
| C3—C4—C5—C6 | −0.06 (19) | O3—N3—C11—C12 | −6.30 (16) |
| Cl1—C4—C5—C6 | −179.68 (9) | C10—C11—C12—C13 | 1.80 (17) |
| C4—C5—C6—C7 | −0.16 (18) | N3—C11—C12—C13 | −176.39 (10) |
| C5—C6—C7—C2 | 0.54 (17) | C11—C12—C13—C8 | 0.20 (17) |
| C3—C2—C7—C6 | −0.69 (17) | N2—C8—C13—C12 | 179.54 (10) |
| N1—C2—C7—C6 | 178.47 (11) | C9—C8—C13—C12 | −2.22 (18) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···O3i | 0.807 (16) | 2.211 (16) | 3.0131 (14) | 172.8 (16) |
| N2—H2···O2i | 0.832 (14) | 2.136 (14) | 2.9448 (14) | 164.1 (14) |
| C3—H3···O1 | 0.95 | 2.26 | 2.8720 (15) | 121 |
| C9—H9···O1 | 0.95 | 2.31 | 2.8833 (15) | 118 |
| C12—H12···Cl1ii | 0.95 | 2.83 | 3.5465 (13) | 133 |
Symmetry codes: (i) x−1/2, −y+3/2, z+1/2; (ii) x, y+1, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZS2070).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810040201/zs2070sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810040201/zs2070Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


