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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Nov 27;66(Pt 12):m1667. doi: 10.1107/S1600536810048464

Tetra­aqua­bis­[5-(3-pyrid­yl)tetra­zolido-κN 5]zinc(II) tetra­hydrate

Yi-Qiang Mu a, Jun Zhao a,*, Cai Li a
PMCID: PMC3011773  PMID: 21589327

Abstract

The title compound, [Zn(C6H4N5)2(H2O)4]·4H2O, was synthesized by the hydro­thermal reaction of Zn(CH3COO)2·2H2O with 3-(2H-tetra­zol-5-yl)pyridine. The ZnII ion is located on an inversion center and is coordinated by two pyridine N atoms from two 5-(3-pyrid­yl)tetra­zolide ligands and four coordinated water mol­ecules in a slightly distorted octa­hedral geometry. The dihedral angle between the pyridine and tetra­zole rings is 9.920 (7)°. In the crystal, mol­ecules are linked into a three-dimensional network by inter­molecular O—H⋯O and O—H⋯N hydrogen bonds involving the tetra­zole group N atoms, the aqua ligands and solvent water mol­ecules.

Related literature

For background to 5-(3-pyrid­yl)tetra­zolate complexes, see: Xiong et al. (2002); Wang et al. (2005). For a related structure, see: Zhang et al. (2006). For hydrogen-bond motifs, see: Bernstein et al. (1995).graphic file with name e-66-m1667-scheme1.jpg

Experimental

Crystal data

  • [Zn(C6H4N5)2(H2O)4]·4H2O

  • M r = 501.78

  • Triclinic, Inline graphic

  • a = 8.0930 (13) Å

  • b = 8.5836 (14) Å

  • c = 8.7082 (14) Å

  • α = 85.942 (2)°

  • β = 65.075 (2)°

  • γ = 72.369 (2)°

  • V = 521.69 (15) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 1.24 mm−1

  • T = 296 K

  • 0.35 × 0.23 × 0.18 mm

Data collection

  • Bruker SMART CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.717, T max = 0.800

  • 2640 measured reflections

  • 1814 independent reflections

  • 1788 reflections with I > 2σ(I)

  • R int = 0.018

Refinement

  • R[F 2 > 2σ(F 2)] = 0.026

  • wR(F 2) = 0.071

  • S = 1.00

  • 1814 reflections

  • 142 parameters

  • H-atom parameters constrained

  • Δρmax = 0.25 e Å−3

  • Δρmin = −0.48 e Å−3

Data collection: SMART (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT ; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810048464/lh5162sup1.cif

e-66-m1667-sup1.cif (17.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048464/lh5162Isup2.hkl

e-66-m1667-Isup2.hkl (89.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1A⋯O3i 0.85 2.02 2.848 (2) 165
O1—H1B⋯O3ii 0.85 1.97 2.813 (2) 171
O2—H2A⋯N5iii 0.85 1.89 2.733 (2) 171
O2—H2B⋯O4iv 0.85 1.92 2.768 (2) 177
O3—H3B⋯O4v 0.85 1.97 2.811 (2) 173
O3—H3A⋯N2ii 0.85 1.96 2.792 (2) 167
O4—H4A⋯N4ii 0.85 1.99 2.838 (2) 175
O4—H4B⋯N3vi 0.85 2.02 2.870 (2) 180

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic; (vi) Inline graphic.

Acknowledgments

This work was supported financially by the Important Project of Hubei Provincial Education Office (Q20101203).

supplementary crystallographic information

Comment

Nowadays much attention is focused on the design and synthesis of functional materials based on metal-organic coordination polymers due to their intriguing topological structures and tremendous range of potential applications. Tetrazole compounds are a class of excellent ligands for construction of novel metal-organic frameworks and for the medical applications, because of their various coordination modes (Xiong et al., 2002; Wang et al., 2005; Zhang et al., 2006). We report herein the crystal structure of the title compound. The asymmetric unit contains one half of a ZnII ion, one 5-(3-pyridyl)tetrazolide (3-ptz) ligand, two coordinated water and two solvent water molecules. The ZnII ion is in a slightly distorted octahedral geometry surrounded by two N atoms from two 5-(3-pyridyl)tetrazolide ligands and four coordinated water molecules (Fig. 1). The dihedral angle between the pyridine and tetrazole rings is 9.920 (7)°. In the crystal, molecules are linked into a three-dimensional network by intermolecular O—H···O, O—H···N hydrogen bonds involving the tetrazole group N atoms, the aqua ligands and solvent water molecules (Fig. 2). The hydrogen bond network contains R24(10), R44(10) and R44(22) rings (Bernstein et al., 1995).

Experimental

A mixture of 3-(2H-tetrazol-5-yl)pyridine (0.2 mmol,0.0294 g), Zn(CH3COO)2.2H2O (0.1 mmol, 0.0219 g), methanol (5 ml) and distilled water (10 ml) were sealed in a 25 ml Teflon-lined stainless steel reactor and heated at 393 K for three days, and then cooled slowly to 298 K at which time colorless crystals were obtained.

Refinement

All the H atoms were positioned geometrically (C—H = 0.93 Å, O—H = 0.85 Å), and allowed to ride on their parent atoms, with Uiso(H) = 1.2 Ueq(C) or 1.5Ueq(O).

Figures

Fig. 1.

Fig. 1.

View of the title complex with the atomic numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are omitted for clarity. [Symmetry code: (A) 2 - x, 1 - y, -z.].

Fig. 2.

Fig. 2.

Part of the crystal structure with hydrogen bonds shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted for clarity.

Crystal data

[Zn(C6H4N5)2(H2O)4]·4H2O Z = 1
Mr = 501.78 F(000) = 260
Triclinic, P1 Dx = 1.597 Mg m3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 8.0930 (13) Å Cell parameters from 2640 reflections
b = 8.5836 (14) Å θ = 2.5–25.0°
c = 8.7082 (14) Å µ = 1.24 mm1
α = 85.942 (2)° T = 296 K
β = 65.075 (2)° Prism, colorless
γ = 72.369 (2)° 0.35 × 0.23 × 0.18 mm
V = 521.69 (15) Å3

Data collection

Bruker SMART CCD diffractometer 1814 independent reflections
Radiation source: fine-focus sealed tube 1788 reflections with I > 2σ(I)
graphite Rint = 0.018
φ and ω scans θmax = 25.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −8→9
Tmin = 0.717, Tmax = 0.800 k = −10→9
2640 measured reflections l = −9→10

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.071 H-atom parameters constrained
S = 1.00 w = 1/[σ2(Fo2) + (0.038P)2 + 0.3832P] where P = (Fo2 + 2Fc2)/3
1814 reflections (Δ/σ)max < 0.001
142 parameters Δρmax = 0.25 e Å3
0 restraints Δρmin = −0.48 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Zn1 1.0000 0.5000 0.0000 0.02415 (12)
N1 0.9006 (2) 0.5872 (2) 0.2605 (2) 0.0253 (3)
N2 1.2471 (2) 0.8188 (2) 0.3456 (2) 0.0295 (4)
N3 1.3341 (2) 0.8789 (2) 0.4176 (2) 0.0323 (4)
N4 1.2417 (3) 0.8856 (2) 0.5824 (2) 0.0316 (4)
N5 1.0910 (2) 0.8308 (2) 0.6230 (2) 0.0277 (4)
O1 1.2917 (2) 0.49525 (18) −0.06216 (18) 0.0332 (3)
H1A 1.3635 0.4132 −0.0366 0.050*
H1B 1.3182 0.5786 −0.0438 0.050*
O2 0.9302 (2) 0.74166 (18) −0.05239 (19) 0.0431 (4)
H2A 0.9749 0.7802 −0.1488 0.052*
H2B 0.8479 0.8183 0.0214 0.065*
O3 0.5798 (2) 0.25397 (19) 1.00465 (19) 0.0359 (3)
H3B 0.5938 0.1703 1.0616 0.054*
H3A 0.6317 0.2165 0.9019 0.054*
O4 0.6545 (2) −0.01658 (18) 0.19326 (18) 0.0337 (3)
H4A 0.6930 0.0211 0.2554 0.051*
H4B 0.5598 −0.0480 0.2593 0.051*
C1 1.0065 (3) 0.6594 (2) 0.2951 (2) 0.0280 (4)
H1 1.1170 0.6696 0.2055 0.034*
C2 0.9644 (3) 0.7203 (2) 0.4543 (2) 0.0233 (4)
C3 0.7977 (3) 0.7081 (3) 0.5869 (2) 0.0284 (4)
H3 0.7630 0.7474 0.6965 0.034*
C4 0.6849 (3) 0.6368 (3) 0.5532 (3) 0.0332 (5)
H4 0.5716 0.6286 0.6401 0.040*
C5 0.7393 (3) 0.5773 (2) 0.3904 (2) 0.0283 (4)
H5 0.6616 0.5287 0.3700 0.034*
C6 1.0978 (3) 0.7907 (2) 0.4753 (2) 0.0234 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Zn1 0.02550 (18) 0.02944 (19) 0.01939 (18) −0.01032 (13) −0.00976 (13) 0.00137 (12)
N1 0.0254 (8) 0.0299 (8) 0.0232 (8) −0.0103 (7) −0.0113 (7) 0.0027 (6)
N2 0.0297 (9) 0.0378 (9) 0.0237 (8) −0.0157 (7) −0.0099 (7) 0.0023 (7)
N3 0.0321 (9) 0.0394 (10) 0.0304 (9) −0.0173 (8) −0.0134 (7) 0.0026 (7)
N4 0.0353 (9) 0.0353 (9) 0.0318 (9) −0.0161 (8) −0.0176 (8) 0.0031 (7)
N5 0.0331 (9) 0.0313 (9) 0.0231 (8) −0.0147 (7) −0.0127 (7) 0.0033 (7)
O1 0.0273 (7) 0.0398 (8) 0.0351 (8) −0.0100 (6) −0.0148 (6) −0.0026 (6)
O2 0.0585 (10) 0.0300 (8) 0.0218 (7) −0.0056 (7) −0.0051 (7) 0.0046 (6)
O3 0.0379 (8) 0.0388 (8) 0.0276 (8) −0.0126 (7) −0.0099 (6) 0.0030 (6)
O4 0.0364 (8) 0.0421 (8) 0.0248 (7) −0.0187 (7) −0.0099 (6) 0.0004 (6)
C1 0.0277 (10) 0.0370 (11) 0.0201 (9) −0.0155 (8) −0.0067 (8) 0.0013 (8)
C2 0.0246 (9) 0.0236 (9) 0.0229 (9) −0.0071 (7) −0.0115 (7) 0.0034 (7)
C3 0.0274 (10) 0.0355 (10) 0.0202 (9) −0.0096 (8) −0.0076 (8) −0.0004 (8)
C4 0.0254 (10) 0.0461 (12) 0.0258 (10) −0.0154 (9) −0.0055 (8) 0.0021 (9)
C5 0.0253 (10) 0.0357 (11) 0.0275 (10) −0.0128 (8) −0.0123 (8) 0.0033 (8)
C6 0.0260 (9) 0.0231 (9) 0.0227 (9) −0.0086 (7) −0.0111 (7) 0.0037 (7)

Geometric parameters (Å, °)

Zn1—O2i 2.0503 (15) O2—H2A 0.8498
Zn1—O2 2.0503 (15) O2—H2B 0.8498
Zn1—N1i 2.1662 (16) O3—H3B 0.8499
Zn1—N1 2.1662 (16) O3—H3A 0.8499
Zn1—O1i 2.1760 (14) O4—H4A 0.8498
Zn1—O1 2.1760 (14) O4—H4B 0.8498
N1—C1 1.333 (3) C1—C2 1.381 (3)
N1—C5 1.341 (2) C1—H1 0.9300
N2—C6 1.335 (2) C2—C3 1.385 (3)
N2—N3 1.339 (2) C2—C6 1.463 (3)
N3—N4 1.305 (3) C3—C4 1.373 (3)
N4—N5 1.339 (2) C3—H3 0.9300
N5—C6 1.329 (3) C4—C5 1.380 (3)
O1—H1A 0.8499 C4—H4 0.9300
O1—H1B 0.8500 C5—H5 0.9300
O2i—Zn1—O2 180.0 H1A—O1—H1B 106.1
O2i—Zn1—N1i 86.61 (6) Zn1—O2—H2A 126.3
O2—Zn1—N1i 93.39 (6) Zn1—O2—H2B 123.6
O2i—Zn1—N1 93.39 (6) H2A—O2—H2B 110.0
O2—Zn1—N1 86.61 (6) H3B—O3—H3A 105.1
N1i—Zn1—N1 180.0 H4A—O4—H4B 107.1
O2i—Zn1—O1i 91.09 (7) N1—C1—C2 124.80 (17)
O2—Zn1—O1i 88.91 (7) N1—C1—H1 117.6
N1i—Zn1—O1i 92.52 (6) C2—C1—H1 117.6
N1—Zn1—O1i 87.48 (6) C1—C2—C3 117.46 (17)
O2i—Zn1—O1 88.91 (7) C1—C2—C6 119.00 (17)
O2—Zn1—O1 91.09 (7) C3—C2—C6 123.53 (17)
N1i—Zn1—O1 87.48 (6) C4—C3—C2 118.58 (18)
N1—Zn1—O1 92.52 (6) C4—C3—H3 120.7
O1i—Zn1—O1 180.00 (8) C2—C3—H3 120.7
C1—N1—C5 116.84 (17) C3—C4—C5 120.07 (18)
C1—N1—Zn1 117.54 (12) C3—C4—H4 120.0
C5—N1—Zn1 125.61 (13) C5—C4—H4 120.0
C6—N2—N3 104.97 (16) N1—C5—C4 122.24 (18)
N4—N3—N2 109.42 (16) N1—C5—H5 118.9
N3—N4—N5 109.47 (16) C4—C5—H5 118.9
C6—N5—N4 105.07 (15) N5—C6—N2 111.07 (16)
Zn1—O1—H1A 118.6 N5—C6—C2 125.41 (17)
Zn1—O1—H1B 122.1 N2—C6—C2 123.50 (17)
O2i—Zn1—N1—C1 109.54 (15) N1—C1—C2—C6 177.49 (18)
O2—Zn1—N1—C1 −70.46 (15) C1—C2—C3—C4 0.0 (3)
N1i—Zn1—N1—C1 −69 (100) C6—C2—C3—C4 −178.70 (19)
O1i—Zn1—N1—C1 −159.52 (15) C2—C3—C4—C5 0.8 (3)
O1—Zn1—N1—C1 20.48 (15) C1—N1—C5—C4 −0.7 (3)
O2i—Zn1—N1—C5 −71.60 (16) Zn1—N1—C5—C4 −179.59 (15)
O2—Zn1—N1—C5 108.40 (16) C3—C4—C5—N1 −0.5 (3)
N1i—Zn1—N1—C5 110 (100) N4—N5—C6—N2 0.0 (2)
O1i—Zn1—N1—C5 19.35 (16) N4—N5—C6—C2 178.35 (17)
O1—Zn1—N1—C5 −160.65 (16) N3—N2—C6—N5 −0.2 (2)
C6—N2—N3—N4 0.2 (2) N3—N2—C6—C2 −178.53 (17)
N2—N3—N4—N5 −0.2 (2) C1—C2—C6—N5 −169.29 (19)
N3—N4—N5—C6 0.1 (2) C3—C2—C6—N5 9.4 (3)
C5—N1—C1—C2 1.6 (3) C1—C2—C6—N2 8.8 (3)
Zn1—N1—C1—C2 −179.40 (15) C3—C2—C6—N2 −172.44 (19)
N1—C1—C2—C3 −1.3 (3)

Symmetry codes: (i) −x+2, −y+1, −z.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1—H1A···O3ii 0.85 2.02 2.848 (2) 165
O1—H1B···O3iii 0.85 1.97 2.813 (2) 171
O2—H2A···N5iv 0.85 1.89 2.733 (2) 171
O2—H2B···O4v 0.85 1.92 2.768 (2) 177
O3—H3B···O4vi 0.85 1.97 2.811 (2) 173
O3—H3A···N2iii 0.85 1.96 2.792 (2) 167
O4—H4A···N4iii 0.85 1.99 2.838 (2) 175
O4—H4B···N3vii 0.85 2.02 2.870 (2) 180

Symmetry codes: (ii) x+1, y, z−1; (iii) −x+2, −y+1, −z+1; (iv) x, y, z−1; (v) x, y+1, z; (vi) x, y, z+1; (vii) x−1, y−1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5162).

References

  1. Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.
  2. Brandenburg, K. (1999). DIAMOND Crystal Impact GbR, Bonn, Germany.
  3. Bruker (2007). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Wang, X.-S., Tang, Y.-Z., Huang, X.-F., Qu, Z.-R., Che, C.-M., Chan, C. W. H. & Xiong, R.-G. (2005). Inorg. Chem.44, 5278–5285. [DOI] [PubMed]
  7. Xiong, R.-G., Xue, X., Zhao, H., You, X.-Z., Abrahams, B. F. & Xue, Z.-L. (2002). Angew. Chem. Int. Ed. Engl.41, 3800–3803. [DOI] [PubMed]
  8. Zhang, C., Ai, H.-Q. & Ng, S. W. (2006). Acta Cryst. E62, m2908–m2909.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810048464/lh5162sup1.cif

e-66-m1667-sup1.cif (17.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048464/lh5162Isup2.hkl

e-66-m1667-Isup2.hkl (89.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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