Abstract
The title compound, [Zn(C6H4N5)2(H2O)4]·4H2O, was synthesized by the hydrothermal reaction of Zn(CH3COO)2·2H2O with 3-(2H-tetrazol-5-yl)pyridine. The ZnII ion is located on an inversion center and is coordinated by two pyridine N atoms from two 5-(3-pyridyl)tetrazolide ligands and four coordinated water molecules in a slightly distorted octahedral geometry. The dihedral angle between the pyridine and tetrazole rings is 9.920 (7)°. In the crystal, molecules are linked into a three-dimensional network by intermolecular O—H⋯O and O—H⋯N hydrogen bonds involving the tetrazole group N atoms, the aqua ligands and solvent water molecules.
Related literature
For background to 5-(3-pyridyl)tetrazolate complexes, see: Xiong et al. (2002 ▶); Wang et al. (2005 ▶). For a related structure, see: Zhang et al. (2006 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).
Experimental
Crystal data
[Zn(C6H4N5)2(H2O)4]·4H2O
M r = 501.78
Triclinic,
a = 8.0930 (13) Å
b = 8.5836 (14) Å
c = 8.7082 (14) Å
α = 85.942 (2)°
β = 65.075 (2)°
γ = 72.369 (2)°
V = 521.69 (15) Å3
Z = 1
Mo Kα radiation
μ = 1.24 mm−1
T = 296 K
0.35 × 0.23 × 0.18 mm
Data collection
Bruker SMART CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.717, T max = 0.800
2640 measured reflections
1814 independent reflections
1788 reflections with I > 2σ(I)
R int = 0.018
Refinement
R[F 2 > 2σ(F 2)] = 0.026
wR(F 2) = 0.071
S = 1.00
1814 reflections
142 parameters
H-atom parameters constrained
Δρmax = 0.25 e Å−3
Δρmin = −0.48 e Å−3
Data collection: SMART (Bruker, 2007) ▶; cell refinement: SAINT (Bruker, 2007) ▶; data reduction: SAINT ▶; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810048464/lh5162sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048464/lh5162Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
O1—H1A⋯O3i | 0.85 | 2.02 | 2.848 (2) | 165 |
O1—H1B⋯O3ii | 0.85 | 1.97 | 2.813 (2) | 171 |
O2—H2A⋯N5iii | 0.85 | 1.89 | 2.733 (2) | 171 |
O2—H2B⋯O4iv | 0.85 | 1.92 | 2.768 (2) | 177 |
O3—H3B⋯O4v | 0.85 | 1.97 | 2.811 (2) | 173 |
O3—H3A⋯N2ii | 0.85 | 1.96 | 2.792 (2) | 167 |
O4—H4A⋯N4ii | 0.85 | 1.99 | 2.838 (2) | 175 |
O4—H4B⋯N3vi | 0.85 | 2.02 | 2.870 (2) | 180 |
Symmetry codes: (i) ; (ii)
; (iii)
; (iv)
; (v)
; (vi)
.
Acknowledgments
This work was supported financially by the Important Project of Hubei Provincial Education Office (Q20101203).
supplementary crystallographic information
Comment
Nowadays much attention is focused on the design and synthesis of functional materials based on metal-organic coordination polymers due to their intriguing topological structures and tremendous range of potential applications. Tetrazole compounds are a class of excellent ligands for construction of novel metal-organic frameworks and for the medical applications, because of their various coordination modes (Xiong et al., 2002; Wang et al., 2005; Zhang et al., 2006). We report herein the crystal structure of the title compound. The asymmetric unit contains one half of a ZnII ion, one 5-(3-pyridyl)tetrazolide (3-ptz) ligand, two coordinated water and two solvent water molecules. The ZnII ion is in a slightly distorted octahedral geometry surrounded by two N atoms from two 5-(3-pyridyl)tetrazolide ligands and four coordinated water molecules (Fig. 1). The dihedral angle between the pyridine and tetrazole rings is 9.920 (7)°. In the crystal, molecules are linked into a three-dimensional network by intermolecular O—H···O, O—H···N hydrogen bonds involving the tetrazole group N atoms, the aqua ligands and solvent water molecules (Fig. 2). The hydrogen bond network contains R24(10), R44(10) and R44(22) rings (Bernstein et al., 1995).
Experimental
A mixture of 3-(2H-tetrazol-5-yl)pyridine (0.2 mmol,0.0294 g), Zn(CH3COO)2.2H2O (0.1 mmol, 0.0219 g), methanol (5 ml) and distilled water (10 ml) were sealed in a 25 ml Teflon-lined stainless steel reactor and heated at 393 K for three days, and then cooled slowly to 298 K at which time colorless crystals were obtained.
Refinement
All the H atoms were positioned geometrically (C—H = 0.93 Å, O—H = 0.85 Å), and allowed to ride on their parent atoms, with Uiso(H) = 1.2 Ueq(C) or 1.5Ueq(O).
Figures
Fig. 1.
View of the title complex with the atomic numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are omitted for clarity. [Symmetry code: (A) 2 - x, 1 - y, -z.].
Fig. 2.
Part of the crystal structure with hydrogen bonds shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted for clarity.
Crystal data
[Zn(C6H4N5)2(H2O)4]·4H2O | Z = 1 |
Mr = 501.78 | F(000) = 260 |
Triclinic, P1 | Dx = 1.597 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.0930 (13) Å | Cell parameters from 2640 reflections |
b = 8.5836 (14) Å | θ = 2.5–25.0° |
c = 8.7082 (14) Å | µ = 1.24 mm−1 |
α = 85.942 (2)° | T = 296 K |
β = 65.075 (2)° | Prism, colorless |
γ = 72.369 (2)° | 0.35 × 0.23 × 0.18 mm |
V = 521.69 (15) Å3 |
Data collection
Bruker SMART CCD diffractometer | 1814 independent reflections |
Radiation source: fine-focus sealed tube | 1788 reflections with I > 2σ(I) |
graphite | Rint = 0.018 |
φ and ω scans | θmax = 25.0°, θmin = 2.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −8→9 |
Tmin = 0.717, Tmax = 0.800 | k = −10→9 |
2640 measured reflections | l = −9→10 |
Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.026 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.071 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.038P)2 + 0.3832P] where P = (Fo2 + 2Fc2)/3 |
1814 reflections | (Δ/σ)max < 0.001 |
142 parameters | Δρmax = 0.25 e Å−3 |
0 restraints | Δρmin = −0.48 e Å−3 |
Special details
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
Zn1 | 1.0000 | 0.5000 | 0.0000 | 0.02415 (12) | |
N1 | 0.9006 (2) | 0.5872 (2) | 0.2605 (2) | 0.0253 (3) | |
N2 | 1.2471 (2) | 0.8188 (2) | 0.3456 (2) | 0.0295 (4) | |
N3 | 1.3341 (2) | 0.8789 (2) | 0.4176 (2) | 0.0323 (4) | |
N4 | 1.2417 (3) | 0.8856 (2) | 0.5824 (2) | 0.0316 (4) | |
N5 | 1.0910 (2) | 0.8308 (2) | 0.6230 (2) | 0.0277 (4) | |
O1 | 1.2917 (2) | 0.49525 (18) | −0.06216 (18) | 0.0332 (3) | |
H1A | 1.3635 | 0.4132 | −0.0366 | 0.050* | |
H1B | 1.3182 | 0.5786 | −0.0438 | 0.050* | |
O2 | 0.9302 (2) | 0.74166 (18) | −0.05239 (19) | 0.0431 (4) | |
H2A | 0.9749 | 0.7802 | −0.1488 | 0.052* | |
H2B | 0.8479 | 0.8183 | 0.0214 | 0.065* | |
O3 | 0.5798 (2) | 0.25397 (19) | 1.00465 (19) | 0.0359 (3) | |
H3B | 0.5938 | 0.1703 | 1.0616 | 0.054* | |
H3A | 0.6317 | 0.2165 | 0.9019 | 0.054* | |
O4 | 0.6545 (2) | −0.01658 (18) | 0.19326 (18) | 0.0337 (3) | |
H4A | 0.6930 | 0.0211 | 0.2554 | 0.051* | |
H4B | 0.5598 | −0.0480 | 0.2593 | 0.051* | |
C1 | 1.0065 (3) | 0.6594 (2) | 0.2951 (2) | 0.0280 (4) | |
H1 | 1.1170 | 0.6696 | 0.2055 | 0.034* | |
C2 | 0.9644 (3) | 0.7203 (2) | 0.4543 (2) | 0.0233 (4) | |
C3 | 0.7977 (3) | 0.7081 (3) | 0.5869 (2) | 0.0284 (4) | |
H3 | 0.7630 | 0.7474 | 0.6965 | 0.034* | |
C4 | 0.6849 (3) | 0.6368 (3) | 0.5532 (3) | 0.0332 (5) | |
H4 | 0.5716 | 0.6286 | 0.6401 | 0.040* | |
C5 | 0.7393 (3) | 0.5773 (2) | 0.3904 (2) | 0.0283 (4) | |
H5 | 0.6616 | 0.5287 | 0.3700 | 0.034* | |
C6 | 1.0978 (3) | 0.7907 (2) | 0.4753 (2) | 0.0234 (4) |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.02550 (18) | 0.02944 (19) | 0.01939 (18) | −0.01032 (13) | −0.00976 (13) | 0.00137 (12) |
N1 | 0.0254 (8) | 0.0299 (8) | 0.0232 (8) | −0.0103 (7) | −0.0113 (7) | 0.0027 (6) |
N2 | 0.0297 (9) | 0.0378 (9) | 0.0237 (8) | −0.0157 (7) | −0.0099 (7) | 0.0023 (7) |
N3 | 0.0321 (9) | 0.0394 (10) | 0.0304 (9) | −0.0173 (8) | −0.0134 (7) | 0.0026 (7) |
N4 | 0.0353 (9) | 0.0353 (9) | 0.0318 (9) | −0.0161 (8) | −0.0176 (8) | 0.0031 (7) |
N5 | 0.0331 (9) | 0.0313 (9) | 0.0231 (8) | −0.0147 (7) | −0.0127 (7) | 0.0033 (7) |
O1 | 0.0273 (7) | 0.0398 (8) | 0.0351 (8) | −0.0100 (6) | −0.0148 (6) | −0.0026 (6) |
O2 | 0.0585 (10) | 0.0300 (8) | 0.0218 (7) | −0.0056 (7) | −0.0051 (7) | 0.0046 (6) |
O3 | 0.0379 (8) | 0.0388 (8) | 0.0276 (8) | −0.0126 (7) | −0.0099 (6) | 0.0030 (6) |
O4 | 0.0364 (8) | 0.0421 (8) | 0.0248 (7) | −0.0187 (7) | −0.0099 (6) | 0.0004 (6) |
C1 | 0.0277 (10) | 0.0370 (11) | 0.0201 (9) | −0.0155 (8) | −0.0067 (8) | 0.0013 (8) |
C2 | 0.0246 (9) | 0.0236 (9) | 0.0229 (9) | −0.0071 (7) | −0.0115 (7) | 0.0034 (7) |
C3 | 0.0274 (10) | 0.0355 (10) | 0.0202 (9) | −0.0096 (8) | −0.0076 (8) | −0.0004 (8) |
C4 | 0.0254 (10) | 0.0461 (12) | 0.0258 (10) | −0.0154 (9) | −0.0055 (8) | 0.0021 (9) |
C5 | 0.0253 (10) | 0.0357 (11) | 0.0275 (10) | −0.0128 (8) | −0.0123 (8) | 0.0033 (8) |
C6 | 0.0260 (9) | 0.0231 (9) | 0.0227 (9) | −0.0086 (7) | −0.0111 (7) | 0.0037 (7) |
Geometric parameters (Å, °)
Zn1—O2i | 2.0503 (15) | O2—H2A | 0.8498 |
Zn1—O2 | 2.0503 (15) | O2—H2B | 0.8498 |
Zn1—N1i | 2.1662 (16) | O3—H3B | 0.8499 |
Zn1—N1 | 2.1662 (16) | O3—H3A | 0.8499 |
Zn1—O1i | 2.1760 (14) | O4—H4A | 0.8498 |
Zn1—O1 | 2.1760 (14) | O4—H4B | 0.8498 |
N1—C1 | 1.333 (3) | C1—C2 | 1.381 (3) |
N1—C5 | 1.341 (2) | C1—H1 | 0.9300 |
N2—C6 | 1.335 (2) | C2—C3 | 1.385 (3) |
N2—N3 | 1.339 (2) | C2—C6 | 1.463 (3) |
N3—N4 | 1.305 (3) | C3—C4 | 1.373 (3) |
N4—N5 | 1.339 (2) | C3—H3 | 0.9300 |
N5—C6 | 1.329 (3) | C4—C5 | 1.380 (3) |
O1—H1A | 0.8499 | C4—H4 | 0.9300 |
O1—H1B | 0.8500 | C5—H5 | 0.9300 |
O2i—Zn1—O2 | 180.0 | H1A—O1—H1B | 106.1 |
O2i—Zn1—N1i | 86.61 (6) | Zn1—O2—H2A | 126.3 |
O2—Zn1—N1i | 93.39 (6) | Zn1—O2—H2B | 123.6 |
O2i—Zn1—N1 | 93.39 (6) | H2A—O2—H2B | 110.0 |
O2—Zn1—N1 | 86.61 (6) | H3B—O3—H3A | 105.1 |
N1i—Zn1—N1 | 180.0 | H4A—O4—H4B | 107.1 |
O2i—Zn1—O1i | 91.09 (7) | N1—C1—C2 | 124.80 (17) |
O2—Zn1—O1i | 88.91 (7) | N1—C1—H1 | 117.6 |
N1i—Zn1—O1i | 92.52 (6) | C2—C1—H1 | 117.6 |
N1—Zn1—O1i | 87.48 (6) | C1—C2—C3 | 117.46 (17) |
O2i—Zn1—O1 | 88.91 (7) | C1—C2—C6 | 119.00 (17) |
O2—Zn1—O1 | 91.09 (7) | C3—C2—C6 | 123.53 (17) |
N1i—Zn1—O1 | 87.48 (6) | C4—C3—C2 | 118.58 (18) |
N1—Zn1—O1 | 92.52 (6) | C4—C3—H3 | 120.7 |
O1i—Zn1—O1 | 180.00 (8) | C2—C3—H3 | 120.7 |
C1—N1—C5 | 116.84 (17) | C3—C4—C5 | 120.07 (18) |
C1—N1—Zn1 | 117.54 (12) | C3—C4—H4 | 120.0 |
C5—N1—Zn1 | 125.61 (13) | C5—C4—H4 | 120.0 |
C6—N2—N3 | 104.97 (16) | N1—C5—C4 | 122.24 (18) |
N4—N3—N2 | 109.42 (16) | N1—C5—H5 | 118.9 |
N3—N4—N5 | 109.47 (16) | C4—C5—H5 | 118.9 |
C6—N5—N4 | 105.07 (15) | N5—C6—N2 | 111.07 (16) |
Zn1—O1—H1A | 118.6 | N5—C6—C2 | 125.41 (17) |
Zn1—O1—H1B | 122.1 | N2—C6—C2 | 123.50 (17) |
O2i—Zn1—N1—C1 | 109.54 (15) | N1—C1—C2—C6 | 177.49 (18) |
O2—Zn1—N1—C1 | −70.46 (15) | C1—C2—C3—C4 | 0.0 (3) |
N1i—Zn1—N1—C1 | −69 (100) | C6—C2—C3—C4 | −178.70 (19) |
O1i—Zn1—N1—C1 | −159.52 (15) | C2—C3—C4—C5 | 0.8 (3) |
O1—Zn1—N1—C1 | 20.48 (15) | C1—N1—C5—C4 | −0.7 (3) |
O2i—Zn1—N1—C5 | −71.60 (16) | Zn1—N1—C5—C4 | −179.59 (15) |
O2—Zn1—N1—C5 | 108.40 (16) | C3—C4—C5—N1 | −0.5 (3) |
N1i—Zn1—N1—C5 | 110 (100) | N4—N5—C6—N2 | 0.0 (2) |
O1i—Zn1—N1—C5 | 19.35 (16) | N4—N5—C6—C2 | 178.35 (17) |
O1—Zn1—N1—C5 | −160.65 (16) | N3—N2—C6—N5 | −0.2 (2) |
C6—N2—N3—N4 | 0.2 (2) | N3—N2—C6—C2 | −178.53 (17) |
N2—N3—N4—N5 | −0.2 (2) | C1—C2—C6—N5 | −169.29 (19) |
N3—N4—N5—C6 | 0.1 (2) | C3—C2—C6—N5 | 9.4 (3) |
C5—N1—C1—C2 | 1.6 (3) | C1—C2—C6—N2 | 8.8 (3) |
Zn1—N1—C1—C2 | −179.40 (15) | C3—C2—C6—N2 | −172.44 (19) |
N1—C1—C2—C3 | −1.3 (3) |
Symmetry codes: (i) −x+2, −y+1, −z.
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···O3ii | 0.85 | 2.02 | 2.848 (2) | 165 |
O1—H1B···O3iii | 0.85 | 1.97 | 2.813 (2) | 171 |
O2—H2A···N5iv | 0.85 | 1.89 | 2.733 (2) | 171 |
O2—H2B···O4v | 0.85 | 1.92 | 2.768 (2) | 177 |
O3—H3B···O4vi | 0.85 | 1.97 | 2.811 (2) | 173 |
O3—H3A···N2iii | 0.85 | 1.96 | 2.792 (2) | 167 |
O4—H4A···N4iii | 0.85 | 1.99 | 2.838 (2) | 175 |
O4—H4B···N3vii | 0.85 | 2.02 | 2.870 (2) | 180 |
Symmetry codes: (ii) x+1, y, z−1; (iii) −x+2, −y+1, −z+1; (iv) x, y, z−1; (v) x, y+1, z; (vi) x, y, z+1; (vii) x−1, y−1, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5162).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810048464/lh5162sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048464/lh5162Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report