Abstract
There are two independent molecules in the asymmetric unit of the title compound, C19H33N2O4P. In the crystal, the two independent molecules are linked via N—H⋯O=P hydrogen bonds, forming dimers.
Related literature
For the biological activity of phosphono-peptides, see: Li et al. (1999 ▶); Liu et al. (2002 ▶); Wang et al. (2001 ▶); Senten et al. (2003 ▶); Joossens & Van der Veken (2004 ▶).
Experimental
Crystal data
C19H33N2O4P
M r = 384.44
Monoclinic,
a = 9.3455 (3) Å
b = 23.6079 (6) Å
c = 10.0517 (4) Å
β = 103.819 (4)°
V = 2153.49 (12) Å3
Z = 4
Mo Kα radiation
μ = 0.15 mm−1
T = 293 K
0.37 × 0.22 × 0.18 mm
Data collection
Bruker APEX area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.946, T max = 0.973
7721 measured reflections
6100 independent reflections
4077 reflections with I > 2σ(I)
R int = 0.028
Refinement
R[F 2 > 2σ(F 2)] = 0.043
wR(F 2) = 0.068
S = 0.82
6100 reflections
469 parameters
1 restraint
H-atom parameters constrained
Δρmax = 0.25 e Å−3
Δρmin = −0.21 e Å−3
Absolute structure: Flack (1983 ▶), 2215 Friedel pairs
Flack parameter: −0.04 (8)
Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810051354/su2222sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810051354/su2222Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1A⋯O2′i | 0.86 | 2.07 | 2.913 (4) | 166 |
| N1′—H1′A⋯O2ii | 0.86 | 1.98 | 2.833 (4) | 171 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
Financial support from the Major Program of the National Natural Science Foundation of China (20732004) and the General Programs of the National Natural Science Foundation of China (20972130 and 40806032) is gratefully acknowledged.
supplementary crystallographic information
Comment
In recent years phosphono-peptides have stimulated a great deal of interest due to their considerable biological activities, including antigrowth (Li et al., 1999), antitumoral (Liu et al., 2002), antiviral (Wang et al., 2001), and inhibiton of serine protease effects (Senten et al., 2003 and Joossens et al., 2004).
The title compound crystallized with two independent chiral molecules (A and B) in the asymmetric unit (Fig. 1). They differ only in the chirality of atom C7 (molecule A) and C7' (molecule B).
In the crystal the two independent molecules are linked via N—H···O=P hydrogen bonds, involving the amide unit and a phosphoryl O atom, to form dimers (Table 1).
Experimental
To a solution of the starting material, tert-butyl (2S,3S)-1-((isopropoxy(isopropyl)phosphoryl)(phenyl)methylamino) -3-methyl-1-oxopentan-2-ylcarbamate, (1 in scheme), (1 mmol) in dichloromethane (CH2Cl2) (10 ml) at 273 K was added trifluoroacetic acid (TFA) (4 ml). After consumption of the starting material (2h), the solvent was then removed under reduced pressure to give a residue, which was extracted with CH2Cl2 (3 × 15 ml). The organic phase was dried over anhydrous MgSO4 and concentrated under vacuum to obtain a slurry residue, which was purified by silica gel column chromatography (petroleum ether/isopropyl alcohol = 35:1) to give the title compound as a colorless amorphous solid. Single crystals of the title compound, suitable for X-ray diffraction analysis, were obtained by slow evaporation of a CH2Cl2 solution.
Refinement
All H atoms were placed in geometrically idealized positions and treated as riding on their parent atoms, with C—H = 0.93 (aromatic), 0.96 (CH3), 0.97 (CH2) and 0.98 (CH), N—H = 0.86 Å with Uiso(H) = k × Ueq(C or N), where k = 1.5 for methyl and amine H-atoms and 1.2 for all other H-atoms.
Figures
Fig. 1.
The molecular structure of the two indendent molecules (A and B) of the title compound, with displacement ellipsoids drawn at the 30% probability level. The H-atoms are drawn as spheres of arbitrary radii.
Fig. 2.
The formation of the title compound.
Crystal data
| C19H33N2O4P | F(000) = 832 |
| Mr = 384.44 | Dx = 1.186 Mg m−3 |
| Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: P 2yb | Cell parameters from 2328 reflections |
| a = 9.3455 (3) Å | θ = 2.2–27.4° |
| b = 23.6079 (6) Å | µ = 0.15 mm−1 |
| c = 10.0517 (4) Å | T = 293 K |
| β = 103.819 (4)° | Block, colourless |
| V = 2153.49 (12) Å3 | 0.37 × 0.22 × 0.18 mm |
| Z = 4 |
Data collection
| Bruker APEX area-detector diffractometer | 6100 independent reflections |
| Radiation source: fine-focus sealed tube | 4077 reflections with I > 2σ(I) |
| graphite | Rint = 0.028 |
| φ and ω scans | θmax = 25.0°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −11→10 |
| Tmin = 0.946, Tmax = 0.973 | k = −28→27 |
| 7721 measured reflections | l = −10→11 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.043 | H-atom parameters constrained |
| wR(F2) = 0.068 | w = 1/[σ2(Fo2) + (0.0212P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 0.82 | (Δ/σ)max < 0.001 |
| 6100 reflections | Δρmax = 0.25 e Å−3 |
| 469 parameters | Δρmin = −0.21 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 2215 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.04 (8) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| P1 | 0.54488 (9) | 0.12742 (4) | 0.41034 (10) | 0.0250 (2) | |
| P1' | 0.76424 (10) | 0.71698 (4) | 0.26570 (11) | 0.0290 (2) | |
| O3 | 0.5955 (2) | 0.07253 (9) | 0.3476 (3) | 0.0301 (6) | |
| O3' | 0.8151 (2) | 0.77426 (9) | 0.2128 (3) | 0.0332 (6) | |
| O2 | 0.5256 (2) | 0.12060 (9) | 0.5501 (2) | 0.0283 (6) | |
| O2' | 0.7782 (2) | 0.71540 (10) | 0.4143 (2) | 0.0348 (6) | |
| N1 | 0.3215 (3) | 0.20195 (10) | 0.3342 (3) | 0.0265 (7) | |
| H1A | 0.2822 | 0.2011 | 0.4033 | 0.032* | |
| O4 | 0.6659 (2) | 0.17261 (9) | 0.4084 (2) | 0.0284 (6) | |
| O1 | 0.3933 (3) | 0.25766 (9) | 0.1783 (3) | 0.0411 (7) | |
| O4' | 0.8531 (2) | 0.67185 (9) | 0.2055 (3) | 0.0318 (6) | |
| N1' | 0.5259 (3) | 0.64986 (10) | 0.1920 (3) | 0.0285 (8) | |
| H1'A | 0.5203 | 0.6421 | 0.2742 | 0.034* | |
| C7' | 0.5793 (3) | 0.70512 (12) | 0.1630 (4) | 0.0266 (9) | |
| H7'A | 0.5834 | 0.7056 | 0.0665 | 0.032* | |
| C1' | 0.4849 (4) | 0.61045 (15) | 0.0934 (4) | 0.0314 (9) | |
| C7 | 0.3786 (3) | 0.14968 (12) | 0.2894 (4) | 0.0234 (9) | |
| H7A | 0.4048 | 0.1578 | 0.2026 | 0.028* | |
| O1' | 0.4953 (3) | 0.61820 (11) | −0.0246 (3) | 0.0452 (7) | |
| C8' | 0.4764 (3) | 0.75257 (14) | 0.1842 (4) | 0.0253 (9) | |
| C14' | 0.8065 (4) | 0.82932 (15) | 0.2768 (4) | 0.0371 (10) | |
| H14A | 0.7221 | 0.8299 | 0.3189 | 0.045* | |
| C8 | 0.2625 (4) | 0.10308 (13) | 0.2619 (4) | 0.0261 (9) | |
| C2 | 0.2534 (4) | 0.30147 (13) | 0.3222 (4) | 0.0336 (10) | |
| H2A | 0.1866 | 0.2859 | 0.3748 | 0.040* | |
| C3 | 0.1619 (3) | 0.33578 (13) | 0.2048 (4) | 0.0277 (9) | |
| H3A | 0.2298 | 0.3545 | 0.1581 | 0.033* | |
| C3' | 0.5447 (4) | 0.50929 (14) | 0.1574 (4) | 0.0384 (11) | |
| H3'A | 0.5721 | 0.5035 | 0.0702 | 0.046* | |
| C1 | 0.3288 (4) | 0.25194 (15) | 0.2697 (4) | 0.0298 (9) | |
| C9' | 0.4235 (4) | 0.75559 (14) | 0.3020 (4) | 0.0341 (10) | |
| H9'A | 0.4504 | 0.7280 | 0.3694 | 0.041* | |
| C2' | 0.4246 (4) | 0.55510 (14) | 0.1336 (4) | 0.0342 (10) | |
| H2'A | 0.3939 | 0.5609 | 0.2193 | 0.041* | |
| C14 | 0.5785 (4) | 0.01592 (14) | 0.3957 (5) | 0.0405 (11) | |
| H14B | 0.5159 | 0.0171 | 0.4612 | 0.049* | |
| C9 | 0.2107 (4) | 0.08209 (15) | 0.1318 (5) | 0.0458 (11) | |
| H9A | 0.2456 | 0.0966 | 0.0595 | 0.055* | |
| C12' | 0.3435 (4) | 0.83763 (18) | 0.1064 (5) | 0.0591 (13) | |
| H12A | 0.3152 | 0.8653 | 0.0394 | 0.071* | |
| N2 | 0.3607 (3) | 0.33692 (12) | 0.4136 (4) | 0.0514 (9) | |
| H2B | 0.3655 | 0.3725 | 0.3969 | 0.062* | |
| H2C | 0.4194 | 0.3223 | 0.4844 | 0.062* | |
| C5 | 0.0744 (4) | 0.38135 (14) | 0.2554 (4) | 0.0449 (11) | |
| H5A | 0.1355 | 0.3985 | 0.3372 | 0.054* | |
| H5B | −0.0098 | 0.3641 | 0.2804 | 0.054* | |
| N2' | 0.2973 (3) | 0.53769 (12) | 0.0285 (4) | 0.0572 (11) | |
| H2'B | 0.2672 | 0.5582 | −0.0435 | 0.069* | |
| H2'C | 0.2519 | 0.5068 | 0.0380 | 0.069* | |
| C5' | 0.4878 (5) | 0.45359 (15) | 0.1966 (5) | 0.0617 (14) | |
| H5'A | 0.4002 | 0.4435 | 0.1272 | 0.074* | |
| H5'B | 0.4588 | 0.4586 | 0.2822 | 0.074* | |
| C10' | 0.3322 (4) | 0.79868 (15) | 0.3199 (4) | 0.0397 (10) | |
| H10A | 0.2963 | 0.7999 | 0.3986 | 0.048* | |
| C6 | 0.0196 (4) | 0.42788 (15) | 0.1484 (5) | 0.0558 (13) | |
| H6A | −0.0365 | 0.4553 | 0.1851 | 0.084* | |
| H6B | −0.0414 | 0.4113 | 0.0673 | 0.084* | |
| H6C | 0.1025 | 0.4462 | 0.1260 | 0.084* | |
| C17 | 0.7184 (4) | 0.19043 (14) | 0.2890 (4) | 0.0378 (10) | |
| H17A | 0.6411 | 0.1839 | 0.2055 | 0.045* | |
| C13' | 0.4373 (4) | 0.79381 (15) | 0.0870 (4) | 0.0392 (10) | |
| H13A | 0.4729 | 0.7928 | 0.0081 | 0.047* | |
| C4 | 0.0620 (4) | 0.29675 (15) | 0.1011 (4) | 0.0440 (11) | |
| H4A | 0.1211 | 0.2692 | 0.0687 | 0.066* | |
| H4B | 0.0081 | 0.3188 | 0.0253 | 0.066* | |
| H4C | −0.0058 | 0.2778 | 0.1443 | 0.066* | |
| C13 | 0.2073 (4) | 0.08177 (15) | 0.3678 (4) | 0.0391 (11) | |
| H13B | 0.2390 | 0.0966 | 0.4557 | 0.047* | |
| C18' | 1.0836 (4) | 0.67632 (19) | 0.1413 (5) | 0.0633 (14) | |
| H18A | 1.0643 | 0.7143 | 0.1077 | 0.095* | |
| H18B | 1.0433 | 0.6500 | 0.0694 | 0.095* | |
| H18C | 1.1881 | 0.6706 | 0.1715 | 0.095* | |
| C11' | 0.2934 (4) | 0.83991 (17) | 0.2233 (5) | 0.0507 (12) | |
| H11A | 0.2329 | 0.8696 | 0.2368 | 0.061* | |
| C17' | 1.0145 (4) | 0.66720 (16) | 0.2576 (4) | 0.0400 (10) | |
| H17B | 1.0494 | 0.6959 | 0.3284 | 0.048* | |
| C11 | 0.0566 (4) | 0.01705 (18) | 0.2126 (6) | 0.0605 (14) | |
| H11B | −0.0106 | −0.0127 | 0.1958 | 0.073* | |
| C16 | 0.7231 (5) | −0.00693 (16) | 0.4637 (6) | 0.090 (2) | |
| H16A | 0.7652 | 0.0155 | 0.5430 | 0.136* | |
| H16B | 0.7867 | −0.0060 | 0.4015 | 0.136* | |
| H16C | 0.7123 | −0.0453 | 0.4911 | 0.136* | |
| C15 | 0.5065 (5) | −0.02030 (18) | 0.2762 (6) | 0.094 (2) | |
| H15A | 0.4094 | −0.0061 | 0.2366 | 0.141* | |
| H15B | 0.4999 | −0.0586 | 0.3065 | 0.141* | |
| H15C | 0.5641 | −0.0194 | 0.2089 | 0.141* | |
| C6' | 0.5957 (5) | 0.40500 (16) | 0.2128 (6) | 0.097 (2) | |
| H6'A | 0.5496 | 0.3711 | 0.2348 | 0.145* | |
| H6'B | 0.6805 | 0.4134 | 0.2851 | 0.145* | |
| H6'C | 0.6256 | 0.3996 | 0.1287 | 0.145* | |
| C19 | 0.7503 (4) | 0.25248 (15) | 0.3056 (5) | 0.0517 (12) | |
| H19A | 0.6606 | 0.2727 | 0.3031 | 0.078* | |
| H19B | 0.7920 | 0.2655 | 0.2325 | 0.078* | |
| H19C | 0.8189 | 0.2591 | 0.3918 | 0.078* | |
| C15' | 0.9436 (4) | 0.83977 (18) | 0.3822 (4) | 0.0576 (13) | |
| H15D | 0.9513 | 0.8130 | 0.4554 | 0.086* | |
| H15E | 0.9421 | 0.8775 | 0.4174 | 0.086* | |
| H15F | 1.0267 | 0.8356 | 0.3423 | 0.086* | |
| C19' | 1.0489 (4) | 0.60907 (16) | 0.3168 (5) | 0.0689 (15) | |
| H19D | 1.0076 | 0.6047 | 0.3950 | 0.103* | |
| H19E | 1.1538 | 0.6041 | 0.3442 | 0.103* | |
| H19F | 1.0072 | 0.5812 | 0.2490 | 0.103* | |
| C16' | 0.7826 (5) | 0.87172 (15) | 0.1608 (5) | 0.0604 (14) | |
| H16D | 0.6898 | 0.8644 | 0.0978 | 0.091* | |
| H16E | 0.8605 | 0.8684 | 0.1141 | 0.091* | |
| H16F | 0.7823 | 0.9093 | 0.1971 | 0.091* | |
| C12 | 0.1044 (4) | 0.03818 (17) | 0.3426 (5) | 0.0515 (12) | |
| H12B | 0.0680 | 0.0234 | 0.4137 | 0.062* | |
| C10 | 0.1072 (5) | 0.03950 (19) | 0.1086 (5) | 0.0602 (13) | |
| H10B | 0.0715 | 0.0259 | 0.0200 | 0.072* | |
| C4' | 0.6813 (4) | 0.52743 (15) | 0.2605 (5) | 0.0594 (14) | |
| H4'A | 0.7552 | 0.4985 | 0.2690 | 0.089* | |
| H4'B | 0.6585 | 0.5333 | 0.3476 | 0.089* | |
| H4'C | 0.7177 | 0.5620 | 0.2306 | 0.089* | |
| C18 | 0.8524 (4) | 0.15616 (16) | 0.2835 (5) | 0.0625 (15) | |
| H18D | 0.8254 | 0.1170 | 0.2686 | 0.094* | |
| H18E | 0.9249 | 0.1600 | 0.3685 | 0.094* | |
| H18F | 0.8925 | 0.1696 | 0.2098 | 0.094* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| P1 | 0.0293 (5) | 0.0232 (5) | 0.0231 (6) | 0.0013 (4) | 0.0075 (5) | −0.0012 (5) |
| P1' | 0.0313 (5) | 0.0299 (6) | 0.0274 (7) | −0.0014 (5) | 0.0100 (5) | 0.0004 (5) |
| O3 | 0.0392 (13) | 0.0222 (13) | 0.0314 (17) | 0.0077 (11) | 0.0134 (13) | 0.0018 (12) |
| O3' | 0.0485 (15) | 0.0234 (14) | 0.0322 (17) | −0.0054 (12) | 0.0186 (14) | −0.0032 (13) |
| O2 | 0.0369 (13) | 0.0296 (14) | 0.0209 (15) | 0.0029 (11) | 0.0117 (12) | −0.0018 (13) |
| O2' | 0.0434 (14) | 0.0386 (14) | 0.0243 (15) | −0.0068 (13) | 0.0114 (13) | 0.0001 (14) |
| N1 | 0.0382 (17) | 0.0211 (17) | 0.0247 (19) | 0.0043 (13) | 0.0167 (16) | 0.0048 (15) |
| O4 | 0.0338 (13) | 0.0297 (13) | 0.0244 (16) | −0.0032 (11) | 0.0121 (13) | −0.0035 (12) |
| O1 | 0.0585 (17) | 0.0320 (16) | 0.043 (2) | 0.0109 (13) | 0.0331 (16) | 0.0119 (14) |
| O4' | 0.0282 (13) | 0.0339 (14) | 0.0335 (17) | 0.0039 (11) | 0.0074 (13) | −0.0028 (13) |
| N1' | 0.0366 (16) | 0.0302 (18) | 0.0180 (19) | −0.0070 (13) | 0.0049 (16) | 0.0008 (15) |
| C7' | 0.0359 (19) | 0.025 (2) | 0.022 (2) | −0.0058 (17) | 0.0134 (18) | 0.0030 (18) |
| C1' | 0.030 (2) | 0.034 (2) | 0.031 (3) | 0.0018 (17) | 0.009 (2) | −0.002 (2) |
| C7 | 0.0307 (19) | 0.023 (2) | 0.018 (2) | 0.0045 (15) | 0.0107 (18) | −0.0022 (17) |
| O1' | 0.0679 (18) | 0.0463 (17) | 0.0259 (17) | −0.0096 (14) | 0.0199 (15) | −0.0034 (15) |
| C8' | 0.0240 (19) | 0.028 (2) | 0.024 (3) | −0.0037 (16) | 0.0054 (19) | 0.0019 (19) |
| C14' | 0.038 (2) | 0.031 (2) | 0.047 (3) | −0.0045 (18) | 0.019 (2) | −0.005 (2) |
| C8 | 0.0291 (19) | 0.023 (2) | 0.026 (2) | 0.0018 (16) | 0.0051 (19) | 0.0037 (18) |
| C2 | 0.039 (2) | 0.023 (2) | 0.043 (3) | 0.0058 (17) | 0.020 (2) | 0.001 (2) |
| C3 | 0.034 (2) | 0.0202 (19) | 0.033 (3) | 0.0032 (17) | 0.0156 (19) | 0.0034 (18) |
| C3' | 0.052 (2) | 0.029 (2) | 0.039 (3) | −0.0053 (19) | 0.023 (2) | −0.004 (2) |
| C1 | 0.033 (2) | 0.027 (2) | 0.033 (3) | 0.0044 (18) | 0.016 (2) | 0.001 (2) |
| C9' | 0.036 (2) | 0.031 (2) | 0.036 (3) | 0.0073 (18) | 0.010 (2) | 0.006 (2) |
| C2' | 0.037 (2) | 0.032 (2) | 0.036 (3) | −0.0107 (18) | 0.015 (2) | −0.002 (2) |
| C14 | 0.058 (3) | 0.019 (2) | 0.057 (3) | 0.002 (2) | 0.038 (3) | 0.003 (2) |
| C9 | 0.050 (2) | 0.041 (2) | 0.044 (3) | −0.008 (2) | 0.006 (2) | −0.013 (2) |
| C12' | 0.063 (3) | 0.058 (3) | 0.064 (4) | 0.025 (2) | 0.030 (3) | 0.028 (3) |
| N2 | 0.065 (2) | 0.0335 (19) | 0.045 (3) | 0.0142 (17) | −0.0096 (19) | −0.0124 (18) |
| C5 | 0.056 (2) | 0.030 (2) | 0.052 (3) | 0.0140 (19) | 0.018 (2) | 0.004 (2) |
| N2' | 0.059 (2) | 0.040 (2) | 0.061 (3) | −0.0297 (17) | −0.010 (2) | 0.007 (2) |
| C5' | 0.076 (3) | 0.039 (3) | 0.080 (4) | 0.002 (2) | 0.038 (3) | 0.002 (3) |
| C10' | 0.035 (2) | 0.045 (2) | 0.040 (3) | 0.0044 (19) | 0.012 (2) | −0.003 (2) |
| C6 | 0.055 (3) | 0.039 (3) | 0.075 (4) | 0.018 (2) | 0.020 (3) | 0.016 (3) |
| C17 | 0.040 (2) | 0.043 (2) | 0.034 (3) | −0.0089 (18) | 0.017 (2) | −0.002 (2) |
| C13' | 0.038 (2) | 0.046 (2) | 0.040 (3) | 0.006 (2) | 0.020 (2) | 0.007 (2) |
| C4 | 0.036 (2) | 0.045 (2) | 0.051 (3) | 0.0009 (19) | 0.011 (2) | −0.003 (2) |
| C13 | 0.034 (2) | 0.041 (2) | 0.040 (3) | −0.0028 (19) | 0.002 (2) | −0.001 (2) |
| C18' | 0.047 (3) | 0.080 (3) | 0.068 (4) | 0.007 (2) | 0.024 (3) | 0.009 (3) |
| C11' | 0.041 (2) | 0.047 (3) | 0.064 (4) | 0.015 (2) | 0.014 (3) | 0.002 (3) |
| C17' | 0.029 (2) | 0.041 (2) | 0.047 (3) | 0.0018 (18) | 0.004 (2) | −0.004 (2) |
| C11 | 0.037 (3) | 0.044 (3) | 0.094 (5) | −0.012 (2) | 0.001 (3) | −0.008 (3) |
| C16 | 0.099 (4) | 0.040 (3) | 0.097 (5) | 0.016 (3) | −0.046 (3) | 0.004 (3) |
| C15 | 0.080 (4) | 0.042 (3) | 0.140 (6) | 0.007 (3) | −0.016 (4) | −0.027 (3) |
| C6' | 0.126 (4) | 0.037 (3) | 0.165 (7) | 0.016 (3) | 0.106 (5) | 0.019 (3) |
| C19 | 0.056 (3) | 0.040 (2) | 0.066 (4) | −0.002 (2) | 0.028 (3) | 0.012 (2) |
| C15' | 0.058 (3) | 0.067 (3) | 0.049 (3) | −0.013 (2) | 0.015 (3) | −0.020 (3) |
| C19' | 0.056 (3) | 0.061 (3) | 0.080 (4) | 0.006 (2) | −0.001 (3) | 0.018 (3) |
| C16' | 0.079 (3) | 0.029 (2) | 0.080 (4) | 0.002 (2) | 0.033 (3) | 0.004 (3) |
| C12 | 0.040 (2) | 0.056 (3) | 0.057 (4) | −0.013 (2) | 0.008 (3) | 0.011 (3) |
| C10 | 0.056 (3) | 0.067 (3) | 0.055 (4) | −0.012 (3) | 0.009 (3) | −0.020 (3) |
| C4' | 0.052 (3) | 0.038 (2) | 0.078 (4) | 0.010 (2) | −0.003 (3) | −0.001 (3) |
| C18 | 0.057 (3) | 0.061 (3) | 0.086 (4) | 0.003 (2) | 0.051 (3) | 0.008 (3) |
Geometric parameters (Å, °)
| P1—O2 | 1.467 (2) | C5—H5B | 0.9700 |
| P1—O4 | 1.558 (2) | N2'—H2'B | 0.8600 |
| P1—O3 | 1.563 (2) | N2'—H2'C | 0.8600 |
| P1—C7 | 1.807 (3) | C5'—C6' | 1.510 (5) |
| P1'—O2' | 1.469 (2) | C5'—H5'A | 0.9700 |
| P1'—O4' | 1.559 (2) | C5'—H5'B | 0.9700 |
| P1'—O3' | 1.568 (2) | C10'—C11' | 1.362 (5) |
| P1'—C7' | 1.810 (3) | C10'—H10A | 0.9300 |
| O3—C14 | 1.443 (4) | C6—H6A | 0.9600 |
| O3'—C14' | 1.461 (4) | C6—H6B | 0.9600 |
| N1—C1 | 1.356 (4) | C6—H6C | 0.9600 |
| N1—C7 | 1.458 (4) | C17—C19 | 1.496 (4) |
| N1—H1A | 0.8600 | C17—C18 | 1.503 (5) |
| O4—C17 | 1.463 (4) | C17—H17A | 0.9800 |
| O1—C1 | 1.220 (4) | C13'—H13A | 0.9300 |
| O4'—C17' | 1.478 (4) | C4—H4A | 0.9600 |
| N1'—C1' | 1.346 (4) | C4—H4B | 0.9600 |
| N1'—C7' | 1.451 (4) | C4—H4C | 0.9600 |
| N1'—H1'A | 0.8600 | C13—C12 | 1.390 (5) |
| C7'—C8' | 1.524 (4) | C13—H13B | 0.9300 |
| C7'—H7'A | 0.9800 | C18'—C17' | 1.480 (6) |
| C1'—O1' | 1.227 (4) | C18'—H18A | 0.9600 |
| C1'—C2' | 1.515 (5) | C18'—H18B | 0.9600 |
| C7—C8 | 1.524 (4) | C18'—H18C | 0.9600 |
| C7—H7A | 0.9800 | C11'—H11A | 0.9300 |
| C8'—C13' | 1.366 (5) | C17'—C19' | 1.500 (5) |
| C8'—C9' | 1.390 (5) | C17'—H17B | 0.9800 |
| C14'—C15' | 1.475 (5) | C11—C10 | 1.355 (7) |
| C14'—C16' | 1.512 (5) | C11—C12 | 1.369 (7) |
| C14'—H14A | 0.9800 | C11—H11B | 0.9300 |
| C8—C9 | 1.374 (5) | C16—H16A | 0.9600 |
| C8—C13 | 1.384 (5) | C16—H16B | 0.9600 |
| C2—N2 | 1.452 (4) | C16—H16C | 0.9600 |
| C2—C3 | 1.516 (5) | C15—H15A | 0.9600 |
| C2—C1 | 1.523 (5) | C15—H15B | 0.9600 |
| C2—H2A | 0.9800 | C15—H15C | 0.9600 |
| C3—C5 | 1.511 (4) | C6'—H6'A | 0.9600 |
| C3—C4 | 1.530 (5) | C6'—H6'B | 0.9600 |
| C3—H3A | 0.9800 | C6'—H6'C | 0.9600 |
| C3'—C4' | 1.502 (5) | C19—H19A | 0.9600 |
| C3'—C5' | 1.506 (5) | C19—H19B | 0.9600 |
| C3'—C2' | 1.536 (5) | C19—H19C | 0.9600 |
| C3'—H3'A | 0.9800 | C15'—H15D | 0.9600 |
| C9'—C10' | 1.367 (4) | C15'—H15E | 0.9600 |
| C9'—H9'A | 0.9300 | C15'—H15F | 0.9600 |
| C2'—N2' | 1.450 (4) | C19'—H19D | 0.9600 |
| C2'—H2'A | 0.9800 | C19'—H19E | 0.9600 |
| C14—C16 | 1.464 (5) | C19'—H19F | 0.9600 |
| C14—C15 | 1.496 (6) | C16'—H16D | 0.9600 |
| C14—H14B | 0.9800 | C16'—H16E | 0.9600 |
| C9—C10 | 1.376 (5) | C16'—H16F | 0.9600 |
| C9—H9A | 0.9300 | C12—H12B | 0.9300 |
| C12'—C11' | 1.366 (6) | C10—H10B | 0.9300 |
| C12'—C13' | 1.399 (5) | C4'—H4'A | 0.9600 |
| C12'—H12A | 0.9300 | C4'—H4'B | 0.9600 |
| N2—H2B | 0.8600 | C4'—H4'C | 0.9600 |
| N2—H2C | 0.8600 | C18—H18D | 0.9600 |
| C5—C6 | 1.537 (5) | C18—H18E | 0.9600 |
| C5—H5A | 0.9700 | C18—H18F | 0.9600 |
| O2—P1—O4 | 110.01 (14) | C6'—C5'—H5'B | 108.5 |
| O2—P1—O3 | 114.41 (14) | H5'A—C5'—H5'B | 107.5 |
| O4—P1—O3 | 105.78 (12) | C11'—C10'—C9' | 120.4 (4) |
| O2—P1—C7 | 113.18 (14) | C11'—C10'—H10A | 119.8 |
| O4—P1—C7 | 107.63 (14) | C9'—C10'—H10A | 119.8 |
| O3—P1—C7 | 105.33 (14) | C5—C6—H6A | 109.5 |
| O2'—P1'—O4' | 116.83 (13) | C5—C6—H6B | 109.5 |
| O2'—P1'—O3' | 113.99 (13) | H6A—C6—H6B | 109.5 |
| O4'—P1'—O3' | 103.00 (13) | C5—C6—H6C | 109.5 |
| O2'—P1'—C7' | 114.64 (16) | H6A—C6—H6C | 109.5 |
| O4'—P1'—C7' | 101.38 (14) | H6B—C6—H6C | 109.5 |
| O3'—P1'—C7' | 105.38 (14) | O4—C17—C19 | 106.7 (3) |
| C14—O3—P1 | 124.4 (2) | O4—C17—C18 | 108.7 (3) |
| C14'—O3'—P1' | 124.4 (2) | C19—C17—C18 | 112.7 (3) |
| C1—N1—C7 | 121.7 (3) | O4—C17—H17A | 109.6 |
| C1—N1—H1A | 119.2 | C19—C17—H17A | 109.6 |
| C7—N1—H1A | 119.2 | C18—C17—H17A | 109.6 |
| C17—O4—P1 | 126.4 (2) | C8'—C13'—C12' | 119.8 (4) |
| C17'—O4'—P1' | 120.4 (2) | C8'—C13'—H13A | 120.1 |
| C1'—N1'—C7' | 121.6 (3) | C12'—C13'—H13A | 120.1 |
| C1'—N1'—H1'A | 119.2 | C3—C4—H4A | 109.5 |
| C7'—N1'—H1'A | 119.2 | C3—C4—H4B | 109.5 |
| N1'—C7'—C8' | 111.9 (3) | H4A—C4—H4B | 109.5 |
| N1'—C7'—P1' | 110.6 (2) | C3—C4—H4C | 109.5 |
| C8'—C7'—P1' | 110.8 (2) | H4A—C4—H4C | 109.5 |
| N1'—C7'—H7'A | 107.8 | H4B—C4—H4C | 109.5 |
| C8'—C7'—H7'A | 107.8 | C8—C13—C12 | 119.8 (4) |
| P1'—C7'—H7'A | 107.8 | C8—C13—H13B | 120.1 |
| O1'—C1'—N1' | 122.3 (3) | C12—C13—H13B | 120.1 |
| O1'—C1'—C2' | 120.4 (4) | C17'—C18'—H18A | 109.5 |
| N1'—C1'—C2' | 117.3 (3) | C17'—C18'—H18B | 109.5 |
| N1—C7—C8 | 111.7 (3) | H18A—C18'—H18B | 109.5 |
| N1—C7—P1 | 111.0 (2) | C17'—C18'—H18C | 109.5 |
| C8—C7—P1 | 111.9 (2) | H18A—C18'—H18C | 109.5 |
| N1—C7—H7A | 107.3 | H18B—C18'—H18C | 109.5 |
| C8—C7—H7A | 107.3 | C10'—C11'—C12' | 119.9 (4) |
| P1—C7—H7A | 107.3 | C10'—C11'—H11A | 120.1 |
| C13'—C8'—C9' | 118.9 (3) | C12'—C11'—H11A | 120.1 |
| C13'—C8'—C7' | 119.6 (3) | O4'—C17'—C18' | 108.1 (3) |
| C9'—C8'—C7' | 121.4 (3) | O4'—C17'—C19' | 108.2 (3) |
| O3'—C14'—C15' | 109.6 (3) | C18'—C17'—C19' | 110.7 (3) |
| O3'—C14'—C16' | 105.2 (3) | O4'—C17'—H17B | 109.9 |
| C15'—C14'—C16' | 112.7 (3) | C18'—C17'—H17B | 109.9 |
| O3'—C14'—H14A | 109.7 | C19'—C17'—H17B | 109.9 |
| C15'—C14'—H14A | 109.7 | C10—C11—C12 | 119.9 (4) |
| C16'—C14'—H14A | 109.7 | C10—C11—H11B | 120.0 |
| C9—C8—C13 | 119.3 (3) | C12—C11—H11B | 120.0 |
| C9—C8—C7 | 120.4 (4) | C14—C16—H16A | 109.5 |
| C13—C8—C7 | 120.2 (4) | C14—C16—H16B | 109.5 |
| N2—C2—C3 | 111.1 (3) | H16A—C16—H16B | 109.5 |
| N2—C2—C1 | 110.8 (3) | C14—C16—H16C | 109.5 |
| C3—C2—C1 | 111.2 (3) | H16A—C16—H16C | 109.5 |
| N2—C2—H2A | 107.9 | H16B—C16—H16C | 109.5 |
| C3—C2—H2A | 107.9 | C14—C15—H15A | 109.5 |
| C1—C2—H2A | 107.9 | C14—C15—H15B | 109.5 |
| C5—C3—C2 | 111.6 (3) | H15A—C15—H15B | 109.5 |
| C5—C3—C4 | 111.5 (3) | C14—C15—H15C | 109.5 |
| C2—C3—C4 | 110.3 (3) | H15A—C15—H15C | 109.5 |
| C5—C3—H3A | 107.7 | H15B—C15—H15C | 109.5 |
| C2—C3—H3A | 107.7 | C5'—C6'—H6'A | 109.5 |
| C4—C3—H3A | 107.7 | C5'—C6'—H6'B | 109.5 |
| C4'—C3'—C5' | 111.3 (4) | H6'A—C6'—H6'B | 109.5 |
| C4'—C3'—C2' | 112.1 (3) | C5'—C6'—H6'C | 109.5 |
| C5'—C3'—C2' | 111.4 (3) | H6'A—C6'—H6'C | 109.5 |
| C4'—C3'—H3'A | 107.2 | H6'B—C6'—H6'C | 109.5 |
| C5'—C3'—H3'A | 107.2 | C17—C19—H19A | 109.5 |
| C2'—C3'—H3'A | 107.2 | C17—C19—H19B | 109.5 |
| O1—C1—N1 | 123.1 (3) | H19A—C19—H19B | 109.5 |
| O1—C1—C2 | 121.9 (3) | C17—C19—H19C | 109.5 |
| N1—C1—C2 | 115.0 (3) | H19A—C19—H19C | 109.5 |
| C10'—C9'—C8' | 120.7 (4) | H19B—C19—H19C | 109.5 |
| C10'—C9'—H9'A | 119.7 | C14'—C15'—H15D | 109.5 |
| C8'—C9'—H9'A | 119.7 | C14'—C15'—H15E | 109.5 |
| N2'—C2'—C1' | 110.0 (3) | H15D—C15'—H15E | 109.5 |
| N2'—C2'—C3' | 110.8 (3) | C14'—C15'—H15F | 109.5 |
| C1'—C2'—C3' | 110.2 (3) | H15D—C15'—H15F | 109.5 |
| N2'—C2'—H2'A | 108.6 | H15E—C15'—H15F | 109.5 |
| C1'—C2'—H2'A | 108.6 | C17'—C19'—H19D | 109.5 |
| C3'—C2'—H2'A | 108.6 | C17'—C19'—H19E | 109.5 |
| O3—C14—C16 | 109.5 (3) | H19D—C19'—H19E | 109.5 |
| O3—C14—C15 | 109.0 (4) | C17'—C19'—H19F | 109.5 |
| C16—C14—C15 | 110.6 (3) | H19D—C19'—H19F | 109.5 |
| O3—C14—H14B | 109.2 | H19E—C19'—H19F | 109.5 |
| C16—C14—H14B | 109.2 | C14'—C16'—H16D | 109.5 |
| C15—C14—H14B | 109.2 | C14'—C16'—H16E | 109.5 |
| C8—C9—C10 | 119.9 (4) | H16D—C16'—H16E | 109.5 |
| C8—C9—H9A | 120.1 | C14'—C16'—H16F | 109.5 |
| C10—C9—H9A | 120.1 | H16D—C16'—H16F | 109.5 |
| C11'—C12'—C13' | 120.3 (4) | H16E—C16'—H16F | 109.5 |
| C11'—C12'—H12A | 119.9 | C11—C12—C13 | 119.8 (5) |
| C13'—C12'—H12A | 119.9 | C11—C12—H12B | 120.1 |
| C2—N2—H2B | 120.0 | C13—C12—H12B | 120.1 |
| C2—N2—H2C | 120.0 | C11—C10—C9 | 121.1 (5) |
| H2B—N2—H2C | 120.0 | C11—C10—H10B | 119.5 |
| C3—C5—C6 | 112.9 (3) | C9—C10—H10B | 119.5 |
| C3—C5—H5A | 109.0 | C3'—C4'—H4'A | 109.5 |
| C6—C5—H5A | 109.0 | C3'—C4'—H4'B | 109.5 |
| C3—C5—H5B | 109.0 | H4'A—C4'—H4'B | 109.5 |
| C6—C5—H5B | 109.0 | C3'—C4'—H4'C | 109.5 |
| H5A—C5—H5B | 107.8 | H4'A—C4'—H4'C | 109.5 |
| C2'—N2'—H2'B | 120.0 | H4'B—C4'—H4'C | 109.5 |
| C2'—N2'—H2'C | 120.0 | C17—C18—H18D | 109.5 |
| H2'B—N2'—H2'C | 120.0 | C17—C18—H18E | 109.5 |
| C3'—C5'—C6' | 115.0 (3) | H18D—C18—H18E | 109.5 |
| C3'—C5'—H5'A | 108.5 | C17—C18—H18F | 109.5 |
| C6'—C5'—H5'A | 108.5 | H18D—C18—H18F | 109.5 |
| C3'—C5'—H5'B | 108.5 | H18E—C18—H18F | 109.5 |
| O2—P1—O3—C14 | 20.4 (3) | N2—C2—C3—C4 | 173.5 (3) |
| O4—P1—O3—C14 | 141.7 (3) | C1—C2—C3—C4 | 49.6 (4) |
| C7—P1—O3—C14 | −104.5 (3) | C7—N1—C1—O1 | −6.1 (5) |
| O2'—P1'—O3'—C14' | −29.8 (3) | C7—N1—C1—C2 | 175.4 (3) |
| O4'—P1'—O3'—C14' | −157.4 (3) | N2—C2—C1—O1 | −78.0 (5) |
| C7'—P1'—O3'—C14' | 96.7 (3) | C3—C2—C1—O1 | 46.1 (5) |
| O2—P1—O4—C17 | 178.8 (2) | N2—C2—C1—N1 | 100.6 (4) |
| O3—P1—O4—C17 | 54.8 (3) | C3—C2—C1—N1 | −135.3 (3) |
| C7—P1—O4—C17 | −57.5 (3) | C13'—C8'—C9'—C10' | 0.8 (5) |
| O2'—P1'—O4'—C17' | −56.4 (3) | C7'—C8'—C9'—C10' | 179.5 (3) |
| O3'—P1'—O4'—C17' | 69.4 (3) | O1'—C1'—C2'—N2' | −42.7 (5) |
| C7'—P1'—O4'—C17' | 178.3 (3) | N1'—C1'—C2'—N2' | 137.5 (3) |
| C1'—N1'—C7'—C8' | 115.2 (3) | O1'—C1'—C2'—C3' | 79.8 (4) |
| C1'—N1'—C7'—P1' | −120.7 (3) | N1'—C1'—C2'—C3' | −100.0 (4) |
| O2'—P1'—C7'—N1' | −60.2 (3) | C4'—C3'—C2'—N2' | 176.9 (3) |
| O4'—P1'—C7'—N1' | 66.6 (3) | C5'—C3'—C2'—N2' | −57.6 (5) |
| O3'—P1'—C7'—N1' | 173.6 (2) | C4'—C3'—C2'—C1' | 54.9 (5) |
| O2'—P1'—C7'—C8' | 64.5 (3) | C5'—C3'—C2'—C1' | −179.6 (3) |
| O4'—P1'—C7'—C8' | −168.7 (2) | P1—O3—C14—C16 | −109.8 (4) |
| O3'—P1'—C7'—C8' | −61.6 (3) | P1—O3—C14—C15 | 129.1 (3) |
| C7'—N1'—C1'—O1' | 2.7 (5) | C13—C8—C9—C10 | −1.3 (6) |
| C7'—N1'—C1'—C2' | −177.5 (3) | C7—C8—C9—C10 | 179.2 (3) |
| C1—N1—C7—C8 | −125.8 (3) | C2—C3—C5—C6 | 162.1 (3) |
| C1—N1—C7—P1 | 108.6 (3) | C4—C3—C5—C6 | −74.0 (4) |
| O2—P1—C7—N1 | 55.9 (3) | C4'—C3'—C5'—C6' | −58.0 (5) |
| O4—P1—C7—N1 | −65.9 (2) | C2'—C3'—C5'—C6' | 176.1 (4) |
| O3—P1—C7—N1 | −178.4 (2) | C8'—C9'—C10'—C11' | −1.0 (6) |
| O2—P1—C7—C8 | −69.6 (3) | P1—O4—C17—C19 | 144.1 (2) |
| O4—P1—C7—C8 | 168.6 (2) | P1—O4—C17—C18 | −94.2 (3) |
| O3—P1—C7—C8 | 56.1 (3) | C9'—C8'—C13'—C12' | −0.9 (5) |
| N1'—C7'—C8'—C13' | −133.4 (3) | C7'—C8'—C13'—C12' | −179.6 (3) |
| P1'—C7'—C8'—C13' | 102.7 (3) | C11'—C12'—C13'—C8' | 1.3 (6) |
| N1'—C7'—C8'—C9' | 48.0 (4) | C9—C8—C13—C12 | 2.2 (5) |
| P1'—C7'—C8'—C9' | −76.0 (4) | C7—C8—C13—C12 | −178.2 (3) |
| P1'—O3'—C14'—C15' | 89.5 (3) | C9'—C10'—C11'—C12' | 1.3 (6) |
| P1'—O3'—C14'—C16' | −149.1 (2) | C13'—C12'—C11'—C10' | −1.5 (7) |
| N1—C7—C8—C9 | 115.1 (4) | P1'—O4'—C17'—C18' | −121.1 (3) |
| P1—C7—C8—C9 | −119.8 (3) | P1'—O4'—C17'—C19' | 118.9 (3) |
| N1—C7—C8—C13 | −64.4 (4) | C10—C11—C12—C13 | −1.4 (7) |
| P1—C7—C8—C13 | 60.7 (4) | C8—C13—C12—C11 | −0.9 (6) |
| N2—C2—C3—C5 | −61.9 (4) | C12—C11—C10—C9 | 2.4 (7) |
| C1—C2—C3—C5 | 174.2 (3) | C8—C9—C10—C11 | −1.0 (6) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1A···O2'i | 0.86 | 2.07 | 2.913 (4) | 166 |
| N1'—H1'A···O2ii | 0.86 | 1.98 | 2.833 (4) | 171 |
Symmetry codes: (i) −x+1, y−1/2, −z+1; (ii) −x+1, y+1/2, −z+1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2222).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810051354/su2222sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810051354/su2222Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


