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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Dec 11;67(Pt 1):o95. doi: 10.1107/S1600536810050579

2-[(E)-2-Hy­droxy-5-(trifluoro­meth­oxy)benzyl­idene­amino]-4-methyl­phenol

Aslı Tosyalı Karadağ a,*, Şehriman Atalay a, Hasan Genç b
PMCID: PMC3050197  PMID: 21522804

Abstract

The title compound, C15H12F3NO3, is a Schiff base which adopts the cis-quinoid form in the solid state. The dihedral angle between the least-squares planes of the benzene rings being 3.6 (1)°. The F atoms of the –CF3 group are disordered over two sets of sites with refined occupancies of 0.61 (5) and 0.39 (5). An intra­molecular N—H⋯O hydrogen bond occurs. The crystal structure is stabilized by inter­molecular O—H⋯O hydrogen bonds.

Related literature

Schiff base compounds can be classified by their photochromic and thermochromic characteristics, see: Calligaris et al. (1972 ▶); Cohen et al. (1964 ▶); Hadjoudis et al. (1987 ▶). For Schiff base tautomerism, see: Karabıyık et al. (2008 ▶).graphic file with name e-67-00o95-scheme1.jpg

Experimental

Crystal data

  • C15H12F3NO3

  • M r = 311.26

  • Triclinic, Inline graphic

  • a = 6.4730 (5) Å

  • b = 8.4435 (6) Å

  • c = 13.0369 (9) Å

  • α = 82.171 (6)°

  • β = 88.034 (6)°

  • γ = 85.622 (6)°

  • V = 703.62 (9) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.13 mm−1

  • T = 293 K

  • 0.58 × 0.27 × 0.03 mm

Data collection

  • Stoe IPDS 2 diffractometer

  • Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.953, T max = 0.995

  • 11152 measured reflections

  • 2762 independent reflections

  • 1328 reflections with I > 2σ(I)

  • R int = 0.078

Refinement

  • R[F 2 > 2σ(F 2)] = 0.048

  • wR(F 2) = 0.077

  • S = 0.89

  • 2762 reflections

  • 236 parameters

  • 3 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.10 e Å−3

  • Δρmin = −0.14 e Å−3

Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050579/zq2072sup1.cif

e-67-00o95-sup1.cif (18.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050579/zq2072Isup2.hkl

e-67-00o95-Isup2.hkl (132.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
N1—H111⋯O2 0.99 (3) 1.72 (3) 2.546 (2) 138 (2)
O1—H1A⋯O2i 0.99 (3) 1.63 (3) 2.591 (2) 164 (3)

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors wish to acknowledge the Faculty of Arts and Sciences of Ondokuz Mayıs University, Turkey, for the use of the Stoe IPDS 2 diffractometer (purchased under grant No. F279 of the University Research Grant of Ondokuz Mayıs University).

supplementary crystallographic information

Comment

Schiff bases have been extensively used as ligands in the field of coordination chemistry (Calligaris et al., 1972). Schiff base compounds can be classified by their photochromic and thermochromic characteristics (Cohen et al., 1964). These properties result from proton transfer from the hydroxyl O atom to the imine N atom (Hadjoudis et al., 1987).

There are two types of intramolecular hydrogen bonds in Schiff bases, N—H···O hydrogen bond in keto-amine or N···H—O hydrogen bond in phenol-imine tautomeric forms (Karabıyık et al., 2008).

The present X-ray investigation shows that the title compound is a Schiff base which exists in the cis-quinoid form in the solid-state. A PLATON plot of the molecule is shown in Fig.1. The molecule is nearly planar, the angle between the least-squares planes of the benzene rings being 3.6 (1)°. The F atoms of the CF3 group are disordered over two sets of sites with refined occupancies of 0.61 (5) and 0.39 (5). The N1—C14 bond length of 1.305 (3) Å is typical of a double bond. The crystal structure is stabilized by intra- and intermolecular O—H···O and N—H···O hydrogen bonds.

Experimental

The title compound was prepared by the reaction of a solution containing 2-hydroxy-5-(trifluoromethoxy)benzaldehyde (0.045 g 0.23 mmol) in 20 ml ethanol and a solution containing 4-amino-4-methylphenol (0.029 g 0.23 mmol) in 20 ml ethanol. The reaction mixture was stirred for 1 h under reflux. Crystals of the title compound suitable for a X-ray analysis were obtained from ethylalcohol by slow evaporation (yield 64%; m.p.402–408 K).

Refinement

The structure of the title compound was solved by direct methods and refined by full-matrix least-square techniques. The H atoms bonded to O1 and N1 were freely refined. All other H atoms were placed in calculated positions and refined using a riding model, with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C) for aromatic H atoms, and with C—H = 0.96 Å and Uiso(H) = 1.5Ueq(C) for methyl H atoms.

Figures

Fig. 1.

Fig. 1.

View of the molecular structure of the title compound showing the atom numbering scheme and displacement ellipsoids for the non-H atoms at the 50% probability level.

Fig. 2.

Fig. 2.

Partial packing view showing the O—H···O hydrogen bonds represented as dashed lines [symmetry code: (i)-x, -y + 2, -z + 1].

Crystal data

C15H12F3NO3 Z = 2
Mr = 311.26 F(000) = 320
Triclinic, P1 Dx = 1.469 Mg m−3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 6.4730 (5) Å Cell parameters from 7349 reflections
b = 8.4435 (6) Å θ = 1.6–27.9°
c = 13.0369 (9) Å µ = 0.13 mm−1
α = 82.171 (6)° T = 293 K
β = 88.034 (6)° Prism, yellow
γ = 85.622 (6)° 0.58 × 0.27 × 0.03 mm
V = 703.62 (9) Å3

Data collection

Stoe IPDS 2 diffractometer 2762 independent reflections
Radiation source: fine-focus sealed tube 1328 reflections with I > 2σ(I)
graphite Rint = 0.078
Detector resolution: 6.67 pixels mm-1 θmax = 26.0°, θmin = 1.6°
rotation method scans h = −7→7
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) k = −10→10
Tmin = 0.953, Tmax = 0.995 l = −16→16
11152 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077 H atoms treated by a mixture of independent and constrained refinement
S = 0.89 w = 1/[σ2(Fo2) + (0.0202P)2] where P = (Fo2 + 2Fc2)/3
2762 reflections (Δ/σ)max = 0.001
236 parameters Δρmax = 0.10 e Å−3
3 restraints Δρmin = −0.14 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
C16 0.9623 (6) 0.7727 (5) 0.9480 (2) 0.0728 (9)
H1A −0.054 (5) 0.899 (4) 0.399 (2) 0.114 (12)*
H111 0.303 (4) 0.857 (3) 0.540 (2) 0.097 (10)*
C1 0.7674 (4) 0.9053 (3) 0.81076 (18) 0.0484 (6)
C2 0.5942 (4) 0.9960 (3) 0.84348 (18) 0.0561 (7)
H2 0.5980 1.0412 0.9045 0.067*
C3 0.4201 (4) 1.0184 (3) 0.78629 (18) 0.0544 (7)
H3 0.3059 1.0792 0.8089 0.065*
C4 0.4088 (4) 0.9514 (3) 0.69342 (17) 0.0462 (6)
C5 0.5886 (4) 0.8589 (3) 0.66153 (16) 0.0427 (6)
C6 0.7678 (4) 0.8403 (3) 0.72199 (18) 0.0486 (6)
H6 0.8861 0.7830 0.7005 0.058*
C7 0.3895 (4) 0.7180 (3) 0.42719 (17) 0.0424 (6)
C8 0.1917 (4) 0.7462 (3) 0.38710 (18) 0.0477 (6)
C9 0.1518 (4) 0.6878 (3) 0.29666 (19) 0.0592 (7)
H9 0.0212 0.7074 0.2680 0.071*
C10 0.3056 (4) 0.6007 (3) 0.2487 (2) 0.0602 (8)
H10 0.2760 0.5618 0.1879 0.072*
C11 0.5026 (4) 0.5689 (3) 0.28793 (18) 0.0500 (6)
C12 0.5427 (4) 0.6285 (3) 0.37817 (17) 0.0464 (6)
H12 0.6736 0.6087 0.4065 0.056*
C13 0.6709 (4) 0.4766 (3) 0.2318 (2) 0.0702 (8)
H13A 0.7443 0.5501 0.1838 0.105*
H13B 0.6093 0.4019 0.1950 0.105*
H13C 0.7657 0.4194 0.2812 0.105*
C14 0.5861 (4) 0.7821 (3) 0.57199 (17) 0.0442 (6)
H14 0.7059 0.7253 0.5516 0.053*
F1A 0.8285 (13) 0.808 (3) 1.0198 (5) 0.120 (4) 0.61 (5)
F2B 0.952 (2) 0.6343 (7) 0.9169 (9) 0.106 (3) 0.61 (5)
F3A 1.1534 (11) 0.7647 (17) 0.9796 (12) 0.103 (3) 0.61 (5)
F1B 0.819 (2) 0.769 (3) 1.0204 (10) 0.141 (7) 0.39 (5)
F2A 0.916 (4) 0.6340 (8) 0.9273 (14) 0.110 (6) 0.39 (5)
F3B 1.122 (4) 0.771 (3) 1.007 (3) 0.154 (8) 0.39 (5)
N1 0.4201 (3) 0.7886 (2) 0.51702 (14) 0.0433 (5)
O1 0.0485 (3) 0.8293 (2) 0.44187 (13) 0.0619 (5)
O2 0.2431 (2) 0.9701 (2) 0.63948 (12) 0.0576 (5)
O33 0.9507 (3) 0.8897 (2) 0.86952 (14) 0.0682 (6)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C16 0.093 (3) 0.080 (3) 0.0477 (19) 0.007 (2) −0.0135 (18) −0.0181 (19)
C1 0.0470 (17) 0.0509 (17) 0.0475 (14) −0.0074 (14) −0.0058 (12) −0.0040 (13)
C2 0.0695 (19) 0.0587 (18) 0.0424 (14) −0.0121 (15) 0.0007 (13) −0.0112 (13)
C3 0.0542 (17) 0.0556 (18) 0.0531 (15) 0.0019 (14) 0.0066 (13) −0.0113 (13)
C4 0.0469 (16) 0.0454 (16) 0.0456 (14) −0.0011 (13) −0.0006 (12) −0.0048 (12)
C5 0.0419 (16) 0.0447 (16) 0.0411 (13) −0.0005 (13) 0.0000 (12) −0.0060 (12)
C6 0.0441 (16) 0.0467 (16) 0.0540 (15) −0.0001 (12) −0.0006 (12) −0.0049 (13)
C7 0.0465 (17) 0.0377 (15) 0.0430 (14) −0.0025 (13) 0.0011 (12) −0.0060 (11)
C8 0.0465 (16) 0.0452 (17) 0.0508 (14) −0.0001 (13) −0.0013 (12) −0.0054 (13)
C9 0.0595 (19) 0.0566 (18) 0.0634 (17) −0.0042 (15) −0.0145 (14) −0.0108 (14)
C10 0.072 (2) 0.0552 (19) 0.0583 (16) −0.0090 (16) −0.0038 (15) −0.0207 (14)
C11 0.0616 (18) 0.0391 (16) 0.0499 (14) −0.0065 (13) 0.0073 (12) −0.0089 (12)
C12 0.0453 (16) 0.0418 (16) 0.0510 (15) 0.0005 (13) 0.0001 (12) −0.0042 (12)
C13 0.080 (2) 0.0564 (18) 0.0773 (19) −0.0037 (16) 0.0181 (16) −0.0256 (15)
C14 0.0404 (16) 0.0428 (16) 0.0470 (14) 0.0040 (12) 0.0026 (12) −0.0023 (12)
F1A 0.153 (7) 0.149 (9) 0.046 (4) 0.051 (4) 0.002 (4) −0.007 (4)
F2B 0.127 (5) 0.085 (7) 0.106 (5) 0.031 (5) −0.024 (4) −0.030 (5)
F3A 0.069 (6) 0.158 (5) 0.078 (5) 0.007 (3) −0.048 (3) −0.003 (4)
F1B 0.190 (14) 0.108 (9) 0.098 (10) 0.030 (6) 0.077 (11) 0.037 (7)
F2A 0.189 (14) 0.045 (7) 0.094 (8) −0.013 (7) −0.087 (9) 0.019 (6)
F3B 0.22 (2) 0.165 (10) 0.082 (11) −0.021 (10) −0.082 (9) −0.007 (7)
N1 0.0387 (13) 0.0436 (14) 0.0467 (12) 0.0048 (10) −0.0011 (10) −0.0063 (10)
O1 0.0488 (11) 0.0748 (14) 0.0604 (11) 0.0158 (10) −0.0036 (9) −0.0138 (10)
O2 0.0461 (11) 0.0673 (13) 0.0592 (10) 0.0141 (9) −0.0051 (9) −0.0173 (9)
O33 0.0648 (14) 0.0784 (14) 0.0620 (12) −0.0158 (11) −0.0203 (10) −0.0008 (11)

Geometric parameters (Å, °)

C16—F2B 1.294 (5) C7—C8 1.391 (3)
C16—F2A 1.295 (5) C7—C12 1.392 (3)
C16—F1B 1.302 (6) C7—N1 1.411 (3)
C16—F1A 1.303 (5) C8—O1 1.362 (3)
C16—F3A 1.312 (5) C8—C9 1.378 (3)
C16—F3B 1.312 (6) C9—C10 1.376 (3)
C16—O33 1.322 (3) C9—H9 0.9300
C1—C6 1.347 (3) C10—C11 1.383 (3)
C1—C2 1.396 (3) C10—H10 0.9300
C1—O33 1.422 (3) C11—C12 1.381 (3)
C2—C3 1.360 (3) C11—C13 1.517 (3)
C2—H2 0.9300 C12—H12 0.9300
C3—C4 1.411 (3) C13—H13A 0.9600
C3—H3 0.9300 C13—H13B 0.9600
C4—O2 1.291 (3) C13—H13C 0.9600
C4—C5 1.433 (3) C14—N1 1.305 (3)
C5—C6 1.411 (3) C14—H14 0.9300
C5—C14 1.412 (3) N1—H111 0.98 (3)
C6—H6 0.9300 O1—H1A 0.99 (3)
F2B—C16—F1B 101.8 (16) C8—C7—N1 115.3 (2)
F2A—C16—F1A 105 (2) C12—C7—N1 124.3 (2)
F2A—C16—F3A 110.3 (14) O1—C8—C9 124.3 (2)
F1A—C16—F3A 111.9 (7) O1—C8—C7 116.8 (2)
F2B—C16—F3B 110.6 (14) C9—C8—C7 118.9 (2)
F1B—C16—F3B 97.7 (19) C10—C9—C8 119.9 (2)
F2B—C16—O33 111.3 (5) C10—C9—H9 120.1
F2A—C16—O33 115.5 (7) C8—C9—H9 120.1
F1B—C16—O33 119.0 (11) C9—C10—C11 122.3 (2)
F1A—C16—O33 108.7 (9) C9—C10—H10 118.8
F3A—C16—O33 105.6 (7) C11—C10—H10 118.8
F3B—C16—O33 115.1 (14) C12—C11—C10 117.7 (2)
C6—C1—C2 121.3 (2) C12—C11—C13 121.1 (2)
C6—C1—O33 119.5 (2) C10—C11—C13 121.2 (2)
C2—C1—O33 119.0 (2) C11—C12—C7 120.7 (2)
C3—C2—C1 120.1 (2) C11—C12—H12 119.6
C3—C2—H2 119.9 C7—C12—H12 119.6
C1—C2—H2 119.9 C11—C13—H13A 109.5
C2—C3—C4 121.4 (2) C11—C13—H13B 109.5
C2—C3—H3 119.3 H13A—C13—H13B 109.5
C4—C3—H3 119.3 C11—C13—H13C 109.5
O2—C4—C3 121.8 (2) H13A—C13—H13C 109.5
O2—C4—C5 120.8 (2) H13B—C13—H13C 109.5
C3—C4—C5 117.3 (2) N1—C14—C5 121.7 (2)
C6—C5—C14 119.7 (2) N1—C14—H14 119.1
C6—C5—C4 119.7 (2) C5—C14—H14 119.1
C14—C5—C4 120.6 (2) C14—N1—C7 129.2 (2)
C1—C6—C5 120.1 (2) C14—N1—H111 114.7 (17)
C1—C6—H6 120.0 C7—N1—H111 116.0 (17)
C5—C6—H6 120.0 C8—O1—H1A 114.9 (17)
C8—C7—C12 120.4 (2) C16—O33—C1 116.4 (2)
C6—C1—C2—C3 0.9 (4) C9—C10—C11—C12 −0.3 (4)
O33—C1—C2—C3 177.2 (2) C9—C10—C11—C13 −178.2 (3)
C1—C2—C3—C4 0.1 (4) C10—C11—C12—C7 −0.3 (3)
C2—C3—C4—O2 179.0 (3) C13—C11—C12—C7 177.7 (3)
C2—C3—C4—C5 −0.1 (4) C8—C7—C12—C11 1.3 (4)
O2—C4—C5—C6 −180.0 (2) N1—C7—C12—C11 −177.3 (2)
C3—C4—C5—C6 −0.9 (3) C6—C5—C14—N1 176.1 (2)
O2—C4—C5—C14 −1.9 (4) C4—C5—C14—N1 −1.9 (3)
C3—C4—C5—C14 177.2 (2) C5—C14—N1—C7 −179.0 (2)
C2—C1—C6—C5 −2.0 (4) C8—C7—N1—C14 179.2 (3)
O33—C1—C6—C5 −178.2 (2) C12—C7—N1—C14 −2.1 (4)
C14—C5—C6—C1 −176.1 (2) F2B—C16—O33—C1 60.1 (7)
C4—C5—C6—C1 1.9 (4) F2A—C16—O33—C1 48.0 (16)
C12—C7—C8—O1 177.5 (2) F1B—C16—O33—C1 −57.8 (14)
N1—C7—C8—O1 −3.8 (3) F1A—C16—O33—C1 −69.6 (9)
C12—C7—C8—C9 −1.8 (4) F3A—C16—O33—C1 170.2 (7)
N1—C7—C8—C9 176.9 (2) F3B—C16—O33—C1 −173.1 (19)
O1—C8—C9—C10 −177.9 (3) C6—C1—O33—C16 −97.4 (3)
C7—C8—C9—C10 1.3 (4) C2—C1—O33—C16 86.3 (3)
C8—C9—C10—C11 −0.2 (4)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H111···O1 0.99 (3) 2.16 (3) 2.610 (3) 106 (2)
N1—H111···O2 0.99 (3) 1.72 (3) 2.546 (2) 138 (2)
O1—H1A···O2i 0.99 (3) 1.63 (3) 2.591 (2) 164 (3)

Symmetry codes: (i) −x, −y+2, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZQ2072).

References

  1. Calligaris, M., Nardin, G. & Randaccio, L. (1972). Coord. Chem. Rev. 7, 385–403.
  2. Cohen, M. D., Schmidt, G. M. J. & Flavian, S. (1964). J. Chem. Soc. pp. 2041–2051.
  3. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  4. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  5. Hadjoudis, E., Vittorakis, M. & Moustakali-Mavridis, I. (1987). Tetrahedron, 43, 1345–1360.
  6. Karabıyık, H., Ocak-İskeleli, N., Petek, H., Albayrak, Ç. & Agar, E. (2008). J. Mol. Struct. 873, 130–136.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  9. Stoe & Cie (2002). X-RED32 and X-AREA Stoe & Cie, Darmstadt, Germany.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050579/zq2072sup1.cif

e-67-00o95-sup1.cif (18.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050579/zq2072Isup2.hkl

e-67-00o95-Isup2.hkl (132.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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