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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Dec 8;67(Pt 1):o56. doi: 10.1107/S1600536810050804

2-Amino-4-(4-fluoro­phen­yl)-6-(naphthalen-1-yl)pyridine-3-carbonitrile

Jian-Qiang Wang a, Shi-Gui Tang b, Cheng Guo a,*
PMCID: PMC3050308  PMID: 21522766

Abstract

The title compound, C22H14FN3, was prepared by a one-pot condensation using malononitrile, an aromatic aldehyde, a methyl ketone and ammonium acetate as reacta­nts under microwave irradiation. The pyridine ring is twisted with respect to the benzene ring and the naphthalene ring system, making dihedral angles of 41.9 (1) and 45.2 (1)°, respectively. In the crystal, mol­ecules are connected via inter­molecular N—H⋯N and C—H⋯F hydrogen bonds, forming a three-dimensional network.

Related literature

For the use of 2-amino-3-cyano­pyridines as inter­mediates in the preparation of heterocyclic compounds, see: Shishoo et al. (1983 ▶). For bond-length data, see: Allen et al. (1987 ▶).graphic file with name e-67-00o56-scheme1.jpg

Experimental

Crystal data

  • C22H14FN3

  • M r = 339.36

  • Monoclinic, Inline graphic

  • a = 14.531 (3) Å

  • b = 8.0900 (16) Å

  • c = 15.516 (3) Å

  • β = 110.04 (3)°

  • V = 1713.6 (6) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 292 K

  • 0.30 × 0.20 × 0.10 mm

Data collection

  • Enraf–Nonius CAD-4 diffractometer

  • Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.974, T max = 0.991

  • 3274 measured reflections

  • 3144 independent reflections

  • 2046 reflections with I > 2σ(I)

  • R int = 0.056

  • 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

  • R[F 2 > 2σ(F 2)] = 0.062

  • wR(F 2) = 0.177

  • S = 1.00

  • 3144 reflections

  • 236 parameters

  • H-atom parameters constrained

  • Δρmax = 0.20 e Å−3

  • Δρmin = −0.29 e Å−3

Data collection: CAD-4 Software (Enraf–Nonius, 1985 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo,1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050804/vm2063sup1.cif

e-67-00o56-sup1.cif (19.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050804/vm2063Isup2.hkl

e-67-00o56-Isup2.hkl (154.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
N2—H2A⋯N1i 0.86 2.33 3.149 (3) 158
C20—H20A⋯Fii 0.93 2.50 3.284 (4) 142

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

We gratefully acknowledge the financial support from the Youth Foundation of Nanjing University of Technology (39704011) and the Analysis Center of Nanjing University.

supplementary crystallographic information

Comment

Derivatives of 2-amino-3-cyanopyridine are important and useful intermediates in preparing a varity of heterocyclic compounds (Shishoo et al., 1983). Therefore, the synthesis of 2-amino-3-cyanopyridine derivatives attracts much interest in organic chemistry. Here, the single-crystal structure of the title compound (I), C22H14FN3, is reported.

The title compound (Fig. 1) consists of a pyridine ring bearing a 4-fluoro phenyl at C7, a naphthyl at C10, an amino group at C9, and a cyano group at C8. The pyridine ring is twisted with respect to the benzene ring and naphthalene ring, with dihedral angles of 41.9 (1)° and 45.2 (1)°, respectively. The bond lengths and angles are within the reported values (Allen et al., 1987). Intermolecular N—H···N and C—H···F hydrogen bonds (Table 1, Fig. 2), and C—H···π and π–π stacking interactions help to stabilize the crystal structure.

Experimental

The title compound (I) was prepared from a mixture of 4-fluorobenzaldehyde (2 mmol), malononitrile (2 mmol), 1-naphthaldehyde (2 mmol) and ammonium acetate (16 mmol) under microwave irradiation (6 min, WF-4000M microwave reaction system). After cooling to room temperature, the resulting solid product was filtered off and recrystallized from methanol to give compound (I). Colorless single crystals suitable for X-ray analysis were obtained by dissolving (I) (0.5 g) in methanol (20 ml) and slowly evaporating the solvent at room temperature for a period of about two weeks.

Refinement

H atoms were positioned geometrically, with C—H = 0.93 Å and N—H = 0.86 Å for aromatic and amino H atoms, and constrained to ride on their parent atoms,with Uiso(H) = 1.2Ueq(C/N).

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I), with the atom-numbering scheme and displacement ellipsoids at the 30% probability level.

Fig. 2.

Fig. 2.

A packing diagram of (I). Intermolecular hydrogen bonds are shown as dashed lines.

Crystal data

C22H14FN3 F(000) = 704
Mr = 339.36 Dx = 1.315 Mg m−3
Monoclinic, P21/c Melting point: 422.15 K
Hall symbol: -P 2ybc Mo Kα radiation, λ = 0.71073 Å
a = 14.531 (3) Å Cell parameters from 25 reflections
b = 8.0900 (16) Å θ = 9–13°
c = 15.516 (3) Å µ = 0.09 mm−1
β = 110.04 (3)° T = 292 K
V = 1713.6 (6) Å3 Block, colourless
Z = 4 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 2046 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.056
graphite θmax = 25.4°, θmin = 1.5°
ω/2θ scans h = 0→17
Absorption correction: ψ scan (North et al., 1968) k = 0→9
Tmin = 0.974, Tmax = 0.991 l = −18→17
3274 measured reflections 3 standard reflections every 200 reflections
3144 independent reflections intensity decay: 1%

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.062 H-atom parameters constrained
wR(F2) = 0.177 w = 1/[σ2(Fo2) + (0.1P)2 + 0.2P] where P = (Fo2 + 2Fc2)/3
S = 1.00 (Δ/σ)max < 0.001
3144 reflections Δρmax = 0.20 e Å−3
236 parameters Δρmin = −0.29 e Å−3
0 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.016 (3)

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
F 0.33760 (12) 0.1683 (3) 0.00030 (15) 0.1049 (8)
N1 0.91754 (14) 0.3544 (2) 0.03593 (12) 0.0425 (5)
C1 0.5928 (2) 0.2725 (4) 0.0869 (2) 0.0601 (8)
H1B 0.6403 0.3032 0.1419 0.072*
N2 0.87074 (16) 0.4912 (3) −0.10104 (14) 0.0566 (6)
H2A 0.9316 0.5106 −0.0915 0.068*
H2B 0.8267 0.5267 −0.1502 0.068*
C2 0.4983 (2) 0.2457 (4) 0.0839 (2) 0.0700 (9)
H2C 0.4811 0.2591 0.1360 0.084*
N3 0.6218 (2) 0.4965 (4) −0.19941 (17) 0.0838 (9)
C3 0.4303 (2) 0.1989 (4) 0.0021 (3) 0.0694 (9)
C4 0.4519 (2) 0.1766 (4) −0.0751 (2) 0.0673 (9)
H4A 0.4039 0.1422 −0.1291 0.081*
C5 0.54649 (19) 0.2056 (4) −0.07242 (19) 0.0565 (7)
H5A 0.5622 0.1927 −0.1253 0.068*
C6 0.61841 (18) 0.2543 (3) 0.00910 (17) 0.0485 (6)
C7 0.72116 (18) 0.2857 (3) 0.01511 (16) 0.0450 (6)
C8 0.74512 (17) 0.3731 (3) −0.05147 (15) 0.0453 (6)
C9 0.84442 (17) 0.4055 (3) −0.03910 (15) 0.0424 (6)
C10 0.89413 (17) 0.2700 (3) 0.09979 (15) 0.0402 (6)
C11 0.79866 (18) 0.2324 (3) 0.09168 (16) 0.0457 (6)
H11A 0.7861 0.1716 0.1373 0.055*
C12 0.6732 (2) 0.4389 (4) −0.13286 (18) 0.0550 (7)
C13 0.97766 (17) 0.2280 (3) 0.18524 (15) 0.0404 (6)
C14 1.06861 (17) 0.1664 (3) 0.18259 (15) 0.0412 (6)
C15 1.08360 (19) 0.1133 (3) 0.10156 (17) 0.0491 (6)
H15A 1.0318 0.1182 0.0461 0.059*
C16 1.1715 (2) 0.0555 (4) 0.1025 (2) 0.0650 (8)
H16A 1.1792 0.0200 0.0484 0.078*
C17 1.2509 (2) 0.0492 (4) 0.1853 (2) 0.0746 (9)
H17A 1.3117 0.0130 0.1856 0.090*
C18 1.2395 (2) 0.0954 (4) 0.2644 (2) 0.0667 (8)
H18A 1.2928 0.0899 0.3187 0.080*
C19 1.14842 (18) 0.1521 (3) 0.26713 (17) 0.0479 (6)
C20 1.1338 (2) 0.1915 (4) 0.34944 (17) 0.0582 (8)
H20A 1.1861 0.1836 0.4044 0.070*
C21 1.0458 (2) 0.2407 (4) 0.35084 (17) 0.0586 (8)
H21A 1.0369 0.2618 0.4064 0.070*
C22 0.9674 (2) 0.2599 (3) 0.26778 (17) 0.0504 (7)
H22A 0.9070 0.2952 0.2691 0.060*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
F 0.0381 (10) 0.142 (2) 0.1317 (18) 0.0019 (11) 0.0249 (11) 0.0234 (15)
N1 0.0410 (11) 0.0474 (12) 0.0378 (11) 0.0010 (9) 0.0116 (9) 0.0053 (9)
C1 0.0453 (16) 0.076 (2) 0.0558 (16) −0.0088 (14) 0.0141 (13) −0.0064 (15)
N2 0.0474 (12) 0.0720 (16) 0.0473 (12) 0.0008 (11) 0.0124 (10) 0.0190 (11)
C2 0.0548 (19) 0.089 (2) 0.072 (2) 0.0004 (17) 0.0296 (17) −0.0007 (18)
N3 0.0727 (18) 0.107 (2) 0.0574 (15) 0.0126 (16) 0.0032 (13) 0.0246 (16)
C3 0.0340 (15) 0.081 (2) 0.091 (2) 0.0045 (14) 0.0193 (16) 0.0118 (19)
C4 0.0428 (16) 0.075 (2) 0.068 (2) −0.0008 (15) −0.0019 (14) 0.0053 (17)
C5 0.0471 (16) 0.0647 (18) 0.0512 (16) −0.0013 (13) 0.0084 (13) 0.0002 (13)
C6 0.0408 (14) 0.0529 (16) 0.0486 (15) −0.0005 (12) 0.0110 (12) 0.0025 (12)
C7 0.0433 (14) 0.0493 (15) 0.0402 (13) −0.0029 (11) 0.0114 (11) −0.0021 (11)
C8 0.0432 (14) 0.0498 (15) 0.0389 (13) 0.0013 (11) 0.0089 (11) 0.0012 (11)
C9 0.0451 (14) 0.0452 (14) 0.0361 (12) 0.0005 (11) 0.0129 (11) 0.0042 (11)
C10 0.0427 (14) 0.0390 (13) 0.0375 (12) 0.0005 (11) 0.0122 (11) 0.0017 (10)
C11 0.0453 (14) 0.0523 (15) 0.0393 (13) −0.0046 (12) 0.0141 (11) 0.0053 (11)
C12 0.0497 (15) 0.0654 (18) 0.0464 (15) 0.0019 (14) 0.0119 (13) 0.0058 (14)
C13 0.0435 (13) 0.0395 (13) 0.0356 (12) −0.0039 (11) 0.0101 (10) 0.0007 (10)
C14 0.0433 (14) 0.0362 (13) 0.0399 (13) −0.0049 (11) 0.0088 (11) 0.0025 (11)
C15 0.0506 (15) 0.0503 (15) 0.0460 (14) 0.0005 (12) 0.0162 (12) 0.0008 (12)
C16 0.0658 (19) 0.0667 (19) 0.0694 (19) 0.0075 (16) 0.0320 (16) −0.0025 (15)
C17 0.0518 (18) 0.079 (2) 0.091 (2) 0.0124 (16) 0.0209 (18) −0.0018 (19)
C18 0.0486 (17) 0.067 (2) 0.069 (2) 0.0051 (15) −0.0003 (14) 0.0018 (16)
C19 0.0459 (15) 0.0411 (14) 0.0477 (15) −0.0033 (12) 0.0044 (11) 0.0028 (11)
C20 0.0617 (18) 0.0585 (17) 0.0378 (14) −0.0053 (14) −0.0044 (13) −0.0006 (12)
C21 0.073 (2) 0.0647 (18) 0.0340 (14) −0.0004 (15) 0.0122 (13) −0.0050 (12)
C22 0.0535 (16) 0.0554 (16) 0.0408 (14) 0.0007 (13) 0.0142 (12) −0.0001 (12)

Geometric parameters (Å, °)

F—C3 1.360 (3) C10—C11 1.383 (3)
N1—C10 1.340 (3) C10—C13 1.498 (3)
N1—C9 1.344 (3) C11—H11A 0.9300
C1—C2 1.376 (4) C13—C22 1.364 (3)
C1—C6 1.387 (4) C13—C14 1.426 (3)
C1—H1B 0.9300 C14—C15 1.414 (3)
N2—C9 1.342 (3) C14—C19 1.427 (3)
N2—H2A 0.8600 C15—C16 1.356 (4)
N2—H2B 0.8600 C15—H15A 0.9300
C2—C3 1.369 (4) C16—C17 1.403 (4)
C2—H2C 0.9300 C16—H16A 0.9300
N3—C12 1.145 (3) C17—C18 1.347 (4)
C3—C4 1.350 (4) C17—H17A 0.9300
C4—C5 1.381 (4) C18—C19 1.414 (4)
C4—H4A 0.9300 C18—H18A 0.9300
C5—C6 1.393 (4) C19—C20 1.401 (4)
C5—H5A 0.9300 C20—C21 1.347 (4)
C6—C7 1.486 (3) C20—H20A 0.9300
C7—C8 1.391 (3) C21—C22 1.406 (4)
C7—C11 1.396 (3) C21—H21A 0.9300
C8—C9 1.413 (3) C22—H22A 0.9300
C8—C12 1.438 (3)
C10—N1—C9 118.1 (2) C10—C11—C7 120.1 (2)
C2—C1—C6 121.1 (3) C10—C11—H11A 120.0
C2—C1—H1B 119.4 C7—C11—H11A 120.0
C6—C1—H1B 119.4 N3—C12—C8 174.6 (3)
C9—N2—H2A 120.0 C22—C13—C14 119.6 (2)
C9—N2—H2B 120.0 C22—C13—C10 118.2 (2)
H2A—N2—H2B 120.0 C14—C13—C10 122.1 (2)
C3—C2—C1 118.0 (3) C15—C14—C13 123.9 (2)
C3—C2—H2C 121.0 C15—C14—C19 117.9 (2)
C1—C2—H2C 121.0 C13—C14—C19 118.1 (2)
C4—C3—F 119.2 (3) C16—C15—C14 121.8 (2)
C4—C3—C2 123.2 (3) C16—C15—H15A 119.1
F—C3—C2 117.6 (3) C14—C15—H15A 119.1
C3—C4—C5 118.8 (3) C15—C16—C17 119.9 (3)
C3—C4—H4A 120.6 C15—C16—H16A 120.0
C5—C4—H4A 120.6 C17—C16—H16A 120.0
C4—C5—C6 120.3 (3) C18—C17—C16 120.3 (3)
C4—C5—H5A 119.9 C18—C17—H17A 119.8
C6—C5—H5A 119.9 C16—C17—H17A 119.8
C1—C6—C5 118.6 (2) C17—C18—C19 121.7 (3)
C1—C6—C7 119.4 (2) C17—C18—H18A 119.1
C5—C6—C7 122.0 (2) C19—C18—H18A 119.1
C8—C7—C11 117.0 (2) C20—C19—C18 122.4 (2)
C8—C7—C6 122.8 (2) C20—C19—C14 119.4 (2)
C11—C7—C6 120.1 (2) C18—C19—C14 118.2 (2)
C7—C8—C9 119.8 (2) C21—C20—C19 121.6 (2)
C7—C8—C12 123.3 (2) C21—C20—H20A 119.2
C9—C8—C12 116.9 (2) C19—C20—H20A 119.2
N2—C9—N1 116.4 (2) C20—C21—C22 119.6 (2)
N2—C9—C8 121.8 (2) C20—C21—H21A 120.2
N1—C9—C8 121.9 (2) C22—C21—H21A 120.2
N1—C10—C11 123.1 (2) C13—C22—C21 121.7 (3)
N1—C10—C13 115.9 (2) C13—C22—H22A 119.2
C11—C10—C13 120.9 (2) C21—C22—H22A 119.2
C6—C1—C2—C3 0.7 (5) C8—C7—C11—C10 1.3 (4)
C1—C2—C3—C4 0.6 (5) C6—C7—C11—C10 −176.3 (2)
C1—C2—C3—F 178.2 (3) N1—C10—C13—C22 131.9 (3)
F—C3—C4—C5 −179.1 (3) C11—C10—C13—C22 −43.9 (3)
C2—C3—C4—C5 −1.5 (5) N1—C10—C13—C14 −44.0 (3)
C3—C4—C5—C6 1.1 (5) C11—C10—C13—C14 140.2 (2)
C2—C1—C6—C5 −1.0 (4) C22—C13—C14—C15 173.1 (2)
C2—C1—C6—C7 179.5 (3) C10—C13—C14—C15 −11.0 (4)
C4—C5—C6—C1 0.1 (4) C22—C13—C14—C19 −4.6 (3)
C4—C5—C6—C7 179.6 (3) C10—C13—C14—C19 171.2 (2)
C1—C6—C7—C8 −137.1 (3) C13—C14—C15—C16 −179.9 (2)
C5—C6—C7—C8 43.4 (4) C19—C14—C15—C16 −2.1 (4)
C1—C6—C7—C11 40.4 (4) C14—C15—C16—C17 −0.8 (4)
C5—C6—C7—C11 −139.2 (3) C15—C16—C17—C18 2.1 (5)
C11—C7—C8—C9 −0.7 (4) C16—C17—C18—C19 −0.3 (5)
C6—C7—C8—C9 176.9 (2) C17—C18—C19—C20 176.2 (3)
C11—C7—C8—C12 −178.5 (2) C17—C18—C19—C14 −2.6 (4)
C6—C7—C8—C12 −1.0 (4) C15—C14—C19—C20 −175.1 (2)
C10—N1—C9—N2 179.3 (2) C13—C14—C19—C20 2.8 (3)
C10—N1—C9—C8 0.3 (4) C15—C14—C19—C18 3.8 (4)
C7—C8—C9—N2 −179.1 (2) C13—C14—C19—C18 −178.3 (2)
C12—C8—C9—N2 −1.1 (4) C18—C19—C20—C21 −178.0 (3)
C7—C8—C9—N1 −0.2 (4) C14—C19—C20—C21 0.8 (4)
C12—C8—C9—N1 177.9 (2) C19—C20—C21—C22 −2.7 (4)
C9—N1—C10—C11 0.5 (4) C14—C13—C22—C21 2.9 (4)
C9—N1—C10—C13 −175.3 (2) C10—C13—C22—C21 −173.1 (2)
N1—C10—C11—C7 −1.3 (4) C20—C21—C22—C13 0.8 (4)
C13—C10—C11—C7 174.2 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C15—H15A···N1 0.93 2.50 2.997 (3) 114
N2—H2A···N1i 0.86 2.33 3.149 (3) 158
C20—H20A···Fii 0.93 2.50 3.284 (4) 142

Symmetry codes: (i) −x+2, −y+1, −z; (ii) x+1, −y+1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: VM2063).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Enraf–Nonius (1985). CAD-4 Software Enraf–Nonius, Delft, The Netherlands.
  3. Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
  4. North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Shishoo, C. J., Devani, M. B., Bhadti, V. S., Ananthan, S. & Ullas, G. V. (1983). Tetrahedron Lett. pp. 4611–4612.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050804/vm2063sup1.cif

e-67-00o56-sup1.cif (19.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050804/vm2063Isup2.hkl

e-67-00o56-Isup2.hkl (154.3KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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