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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Dec 11;67(Pt 1):m58. doi: 10.1107/S1600536810050889

{2-Morpholino-N-[1-(2-pyrid­yl)ethyl­idene]ethanamine-κ3 N,N′,N′′}bis­(thio­cyanato-κN)copper(II)

Nura Suleiman Gwaram a, Nurul Azimah Ikmal Hisham a, Hamid Khaledi a,*, Hapipah Mohd Ali a
PMCID: PMC3050323  PMID: 21522576

Abstract

In the title compound, [Cu(NCS)2(C13H19N3O)], the CuII ion is five-coordinated by the N,N′,N′′-tridentate Schiff base and the N atoms of two isothio­cyanate ligands in a square-pyramidal geometry. In the crystal, C—H⋯N, C—H⋯O and C—H⋯S inter­actions link adjacent mol­ecules into layers parallel to the ac plane. A weak inter­molecular π–π inter­action occurs between the aromatic rings with a centroid–centroid distance of 3.9412 (9) Å.

Related literature

For related structures of Cu(II) complexes, see: Drew et al. (2009 ▶); You et al. (2006 ▶); Yue et al. (2005 ▶).graphic file with name e-67-00m58-scheme1.jpg

Experimental

Crystal data

  • [Cu(NCS)2(C13H19N3O)]

  • M r = 413.01

  • Monoclinic, Inline graphic

  • a = 10.6912 (1) Å

  • b = 14.0350 (2) Å

  • c = 12.2530 (2) Å

  • β = 92.203 (1)°

  • V = 1837.22 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 1.43 mm−1

  • T = 100 K

  • 0.41 × 0.39 × 0.08 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.592, T max = 0.894

  • 16491 measured reflections

  • 4007 independent reflections

  • 3593 reflections with I > 2σ(I)

  • R int = 0.024

Refinement

  • R[F 2 > 2σ(F 2)] = 0.023

  • wR(F 2) = 0.061

  • S = 1.08

  • 4007 reflections

  • 218 parameters

  • 2 restraints

  • H-atom parameters constrained

  • Δρmax = 0.37 e Å−3

  • Δρmin = −0.26 e Å−3

Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050889/is2639sup1.cif

e-67-00m58-sup1.cif (18.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050889/is2639Isup2.hkl

e-67-00m58-Isup2.hkl (196.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C4—H4⋯O1i 0.95 2.40 3.211 (2) 144
C7—H7B⋯O1i 0.98 2.33 3.248 (2) 155
C7—H7C⋯S2ii 0.98 2.83 3.7021 (18) 149
C8—H8B⋯N5ii 0.99 2.55 3.367 (2) 140
C13—H13A⋯N4 0.99 2.58 3.181 (2) 119

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank the University of Malaya for funding this study (UMRG grant RG024/09BIO).

supplementary crystallographic information

Comment

The title compound is a mixed-ligand copper(II) complex with isothiocyanate and the Schiff base 2-morpholino-N-[1-(2-pyridyl)ethylidene]ethanamine. The geometry of the complex is slightly distorted square-pyramidal (τ = 0.05) with the N,N',N"-tridentate Schiff base and one SCN ligand at the basal positions, while the apical position is occupied by a second SCN ligand. This arrangement has been observed in some other mixed-ligand copper(II) complexes (Drew et al., 2009; You et al., 2006; Yue et al., 2005). In the crystal structure, the C—H···N, C—H···O and C—H···S interactions within the range for normal hydrogen bonds link the adjacent molecules into layers parallel to the ac plane (Fig. 2). An intramolecular C—H···N hydrogen bonding is also observed. Moreover, the aromatic rings of each two molecules related by the symmetry -x + 2, -y, -z + 1, are arranged in an antiparallel manner with centroid-centroid separation of 3.9412 (9) Å, indicative of a weak π–π interaction.

Experimental

A mixture of 2-acetylpyridine (0.20 g, 1.65 mmol) and 4-(2-aminoethyl)morpholine (0.21 g, 1.65 mmol) in ethanol (20 ml) was refluxed for 2 hr followed by addition of a solution of copper(II) acetate monohydrate (0.33 g, 1.65 mmol) and sodium thiocyanete (0.134 g, 1.65 mmol) in a minimum amount of ethanol. The resulting solution was refluxed for 30 min, then left at room temperature. The crystals of the title complex were obtained in a week.

Refinement

The hydrogen atoms were placed at calculated positions (C—H 0.95–0.99 Å) and were treated as riding on their parent atoms with Uiso(H) set to 1.2 or 1.5Ueq(C). An additional rigid-bond type restraint (DELU in SHELXL97) was placed on the displacement parameters of S1 and C14; S2 and C15.

Figures

Fig. 1.

Fig. 1.

Thermal ellipsoid plot of the title compound at the 50% probability level. Hydrogen atoms are drawn as spheres of arbitrary radii.

Fig. 2.

Fig. 2.

The packing diagram of the title compound, viewed down the crystallographic a axis.

Crystal data

[Cu(NCS)2(C13H19N3O)] F(000) = 852
Mr = 413.01 Dx = 1.493 Mg m−3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 7443 reflections
a = 10.6912 (1) Å θ = 2.2–30.7°
b = 14.0350 (2) Å µ = 1.43 mm−1
c = 12.2530 (2) Å T = 100 K
β = 92.203 (1)° Plate, blue
V = 1837.22 (4) Å3 0.41 × 0.39 × 0.08 mm
Z = 4

Data collection

Bruker APEXII CCD diffractometer 4007 independent reflections
Radiation source: fine-focus sealed tube 3593 reflections with I > 2σ(I)
graphite Rint = 0.024
φ and ω scans θmax = 27.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −13→13
Tmin = 0.592, Tmax = 0.894 k = −17→17
16491 measured reflections l = −15→15

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.061 H-atom parameters constrained
S = 1.08 w = 1/[σ2(Fo2) + (0.0264P)2 + 0.8835P] where P = (Fo2 + 2Fc2)/3
4007 reflections (Δ/σ)max = 0.001
218 parameters Δρmax = 0.37 e Å−3
2 restraints Δρmin = −0.26 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cu1 0.828576 (17) 0.205404 (13) 0.447661 (15) 0.01426 (6)
S1 0.54717 (4) −0.02085 (3) 0.29655 (4) 0.02655 (11)
S2 1.11219 (4) 0.39163 (3) 0.33440 (4) 0.02849 (11)
O1 0.42152 (11) 0.29240 (8) 0.55167 (10) 0.0219 (3)
N1 0.99124 (12) 0.13295 (9) 0.43945 (10) 0.0152 (3)
N2 0.92988 (12) 0.27488 (9) 0.55693 (10) 0.0153 (3)
N3 0.68518 (12) 0.28625 (9) 0.50715 (11) 0.0155 (3)
N4 0.72317 (13) 0.11286 (10) 0.37153 (11) 0.0194 (3)
N5 0.87234 (14) 0.31121 (10) 0.31479 (11) 0.0212 (3)
C1 1.01523 (15) 0.05728 (11) 0.37750 (12) 0.0176 (3)
H1 0.9486 0.0289 0.3355 0.021*
C2 1.13462 (16) 0.01887 (12) 0.37269 (13) 0.0204 (3)
H2 1.1497 −0.0345 0.3273 0.024*
C3 1.23136 (16) 0.05957 (12) 0.43502 (14) 0.0216 (3)
H3 1.3138 0.0346 0.4328 0.026*
C4 1.20628 (15) 0.13735 (12) 0.50084 (13) 0.0200 (3)
H4 1.2711 0.1659 0.5449 0.024*
C5 1.08541 (15) 0.17262 (11) 0.50118 (12) 0.0163 (3)
C6 1.04657 (15) 0.25572 (11) 0.56749 (12) 0.0166 (3)
C7 1.13919 (16) 0.30782 (13) 0.63899 (14) 0.0233 (4)
H7A 1.1033 0.3688 0.6612 0.035*
H7B 1.2152 0.3196 0.5989 0.035*
H7C 1.1600 0.2694 0.7040 0.035*
C8 0.86732 (15) 0.35203 (11) 0.61333 (13) 0.0182 (3)
H8A 0.9224 0.4087 0.6188 0.022*
H8B 0.8471 0.3318 0.6880 0.022*
C9 0.74783 (15) 0.37566 (11) 0.54728 (13) 0.0184 (3)
H9A 0.6903 0.4117 0.5934 0.022*
H9B 0.7681 0.4163 0.4843 0.022*
C10 0.62870 (15) 0.23026 (11) 0.59640 (13) 0.0178 (3)
H10A 0.6913 0.2230 0.6575 0.021*
H10B 0.6070 0.1658 0.5688 0.021*
C11 0.51185 (15) 0.27710 (12) 0.63883 (13) 0.0204 (3)
H11A 0.4754 0.2359 0.6949 0.024*
H11B 0.5344 0.3388 0.6734 0.024*
C12 0.47049 (16) 0.35294 (12) 0.47023 (14) 0.0223 (3)
H12A 0.4932 0.4154 0.5029 0.027*
H12B 0.4059 0.3637 0.4115 0.027*
C13 0.58532 (15) 0.30782 (12) 0.42254 (13) 0.0191 (3)
H13A 0.5604 0.2481 0.3847 0.023*
H13B 0.6193 0.3515 0.3676 0.023*
C14 0.65038 (15) 0.05637 (11) 0.34076 (12) 0.0165 (3)
C15 0.97181 (16) 0.34563 (11) 0.32179 (13) 0.0190 (3)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cu1 0.01509 (10) 0.01341 (10) 0.01417 (10) −0.00117 (7) −0.00099 (7) −0.00142 (7)
S1 0.0282 (2) 0.0203 (2) 0.0307 (2) −0.00934 (17) −0.00451 (18) −0.00294 (18)
S2 0.0273 (2) 0.0211 (2) 0.0369 (3) −0.00521 (17) −0.00168 (19) 0.00639 (19)
O1 0.0166 (6) 0.0241 (6) 0.0251 (6) −0.0018 (5) 0.0010 (5) 0.0008 (5)
N1 0.0182 (7) 0.0140 (6) 0.0135 (6) −0.0012 (5) 0.0005 (5) 0.0014 (5)
N2 0.0179 (7) 0.0143 (6) 0.0137 (6) −0.0018 (5) 0.0007 (5) −0.0003 (5)
N3 0.0163 (7) 0.0152 (6) 0.0150 (6) −0.0016 (5) −0.0008 (5) 0.0012 (5)
N4 0.0196 (7) 0.0183 (7) 0.0200 (7) −0.0007 (5) −0.0014 (5) −0.0012 (6)
N5 0.0269 (8) 0.0199 (7) 0.0167 (7) 0.0000 (6) 0.0007 (6) 0.0027 (5)
C1 0.0235 (8) 0.0150 (7) 0.0141 (7) −0.0014 (6) −0.0007 (6) 0.0014 (6)
C2 0.0271 (9) 0.0164 (8) 0.0178 (8) 0.0031 (6) 0.0014 (6) −0.0001 (6)
C3 0.0210 (8) 0.0202 (8) 0.0236 (8) 0.0032 (6) 0.0017 (7) 0.0033 (7)
C4 0.0182 (8) 0.0205 (8) 0.0212 (8) −0.0008 (6) −0.0016 (6) 0.0011 (7)
C5 0.0186 (8) 0.0162 (7) 0.0142 (7) −0.0019 (6) 0.0007 (6) 0.0013 (6)
C6 0.0197 (8) 0.0168 (7) 0.0134 (7) −0.0025 (6) 0.0013 (6) −0.0003 (6)
C7 0.0183 (8) 0.0284 (9) 0.0231 (8) −0.0039 (7) −0.0007 (7) −0.0088 (7)
C8 0.0192 (8) 0.0170 (7) 0.0184 (8) −0.0017 (6) 0.0010 (6) −0.0053 (6)
C9 0.0191 (8) 0.0140 (7) 0.0223 (8) −0.0018 (6) 0.0023 (6) −0.0015 (6)
C10 0.0194 (8) 0.0162 (7) 0.0178 (8) −0.0020 (6) −0.0001 (6) 0.0018 (6)
C11 0.0187 (8) 0.0229 (8) 0.0196 (8) −0.0028 (6) 0.0013 (6) −0.0002 (7)
C12 0.0212 (9) 0.0201 (8) 0.0255 (9) 0.0018 (6) −0.0015 (7) 0.0036 (7)
C13 0.0199 (8) 0.0207 (8) 0.0164 (8) 0.0011 (6) −0.0026 (6) 0.0019 (6)
C14 0.0191 (8) 0.0150 (7) 0.0154 (7) 0.0008 (5) −0.0001 (6) 0.0005 (6)
C15 0.0276 (8) 0.0142 (7) 0.0154 (7) 0.0016 (6) 0.0013 (6) 0.0029 (6)

Geometric parameters (Å, °)

Cu1—N4 1.9356 (14) C3—H3 0.9500
Cu1—N2 1.9506 (13) C4—C5 1.384 (2)
Cu1—N1 2.0204 (13) C4—H4 0.9500
Cu1—N3 2.0627 (13) C5—C6 1.490 (2)
Cu1—N5 2.2657 (14) C6—C7 1.489 (2)
S1—C14 1.6247 (16) C7—H7A 0.9800
S2—C15 1.6357 (18) C7—H7B 0.9800
O1—C12 1.425 (2) C7—H7C 0.9800
O1—C11 1.428 (2) C8—C9 1.522 (2)
N1—C1 1.336 (2) C8—H8A 0.9900
N1—C5 1.355 (2) C8—H8B 0.9900
N2—C6 1.278 (2) C9—H9A 0.9900
N2—C8 1.460 (2) C9—H9B 0.9900
N3—C13 1.4904 (19) C10—C11 1.521 (2)
N3—C10 1.493 (2) C10—H10A 0.9900
N3—C9 1.4966 (19) C10—H10B 0.9900
N4—C14 1.164 (2) C11—H11A 0.9900
N5—C15 1.168 (2) C11—H11B 0.9900
C1—C2 1.389 (2) C12—C13 1.518 (2)
C1—H1 0.9500 C12—H12A 0.9900
C2—C3 1.385 (2) C12—H12B 0.9900
C2—H2 0.9500 C13—H13A 0.9900
C3—C4 1.390 (2) C13—H13B 0.9900
N4—Cu1—N2 164.55 (6) C6—C7—H7B 109.5
N4—Cu1—N1 97.15 (5) H7A—C7—H7B 109.5
N2—Cu1—N1 80.18 (5) C6—C7—H7C 109.5
N4—Cu1—N3 96.46 (5) H7A—C7—H7C 109.5
N2—Cu1—N3 83.28 (5) H7B—C7—H7C 109.5
N1—Cu1—N3 161.32 (5) N2—C8—C9 107.46 (12)
N4—Cu1—N5 103.06 (5) N2—C8—H8A 110.2
N2—Cu1—N5 92.35 (5) C9—C8—H8A 110.2
N1—Cu1—N5 95.29 (5) N2—C8—H8B 110.2
N3—Cu1—N5 94.03 (5) C9—C8—H8B 110.2
C12—O1—C11 110.92 (12) H8A—C8—H8B 108.5
C1—N1—C5 119.27 (14) N3—C9—C8 110.35 (12)
C1—N1—Cu1 127.79 (11) N3—C9—H9A 109.6
C5—N1—Cu1 112.82 (10) C8—C9—H9A 109.6
C6—N2—C8 124.83 (13) N3—C9—H9B 109.6
C6—N2—Cu1 118.59 (11) C8—C9—H9B 109.6
C8—N2—Cu1 116.31 (10) H9A—C9—H9B 108.1
C13—N3—C10 108.51 (12) N3—C10—C11 112.55 (13)
C13—N3—C9 110.96 (12) N3—C10—H10A 109.1
C10—N3—C9 112.90 (12) C11—C10—H10A 109.1
C13—N3—Cu1 112.84 (10) N3—C10—H10B 109.1
C10—N3—Cu1 107.24 (9) C11—C10—H10B 109.1
C9—N3—Cu1 104.36 (9) H10A—C10—H10B 107.8
C14—N4—Cu1 169.48 (13) O1—C11—C10 110.49 (13)
C15—N5—Cu1 115.52 (12) O1—C11—H11A 109.6
N1—C1—C2 121.97 (15) C10—C11—H11A 109.6
N1—C1—H1 119.0 O1—C11—H11B 109.6
C2—C1—H1 119.0 C10—C11—H11B 109.6
C3—C2—C1 118.98 (15) H11A—C11—H11B 108.1
C3—C2—H2 120.5 O1—C12—C13 110.18 (13)
C1—C2—H2 120.5 O1—C12—H12A 109.6
C2—C3—C4 119.16 (15) C13—C12—H12A 109.6
C2—C3—H3 120.4 O1—C12—H12B 109.6
C4—C3—H3 120.4 C13—C12—H12B 109.6
C5—C4—C3 118.94 (15) H12A—C12—H12B 108.1
C5—C4—H4 120.5 N3—C13—C12 112.65 (13)
C3—C4—H4 120.5 N3—C13—H13A 109.1
N1—C5—C4 121.67 (15) C12—C13—H13A 109.1
N1—C5—C6 114.16 (13) N3—C13—H13B 109.1
C4—C5—C6 124.17 (14) C12—C13—H13B 109.1
N2—C6—C7 125.52 (15) H13A—C13—H13B 107.8
N2—C6—C5 113.64 (14) N4—C14—S1 178.86 (15)
C7—C6—C5 120.83 (14) N5—C15—S2 178.35 (15)
C6—C7—H7A 109.5

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C4—H4···O1i 0.95 2.40 3.211 (2) 144
C7—H7B···O1i 0.98 2.33 3.248 (2) 155
C7—H7C···S2ii 0.98 2.83 3.7021 (18) 149
C8—H8B···N5ii 0.99 2.55 3.367 (2) 140
C13—H13A···N4 0.99 2.58 3.181 (2) 119

Symmetry codes: (i) x+1, y, z; (ii) x, −y+1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: IS2639).

References

  1. Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
  2. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Drew, M. G. B., Das, D., De, S. & Datta, D. (2009). Inorg. Chim. Acta, 362, 1501–1505.
  4. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
  7. You, Z.-L., Wang, J. & Han, X. (2006). Acta Cryst. E62, m860–m861.
  8. Yue, G.-R., Xu, X.-J., Shi, Y.-Z. & Feng, L. (2005). Acta Cryst. E61, m693–m694.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050889/is2639sup1.cif

e-67-00m58-sup1.cif (18.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050889/is2639Isup2.hkl

e-67-00m58-Isup2.hkl (196.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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