Abstract
In the title compound, [Cu(NCS)2(C13H19N3O)], the CuII ion is five-coordinated by the N,N′,N′′-tridentate Schiff base and the N atoms of two isothiocyanate ligands in a square-pyramidal geometry. In the crystal, C—H⋯N, C—H⋯O and C—H⋯S interactions link adjacent molecules into layers parallel to the ac plane. A weak intermolecular π–π interaction occurs between the aromatic rings with a centroid–centroid distance of 3.9412 (9) Å.
Related literature
For related structures of Cu(II) complexes, see: Drew et al. (2009 ▶); You et al. (2006 ▶); Yue et al. (2005 ▶).
Experimental
Crystal data
[Cu(NCS)2(C13H19N3O)]
M r = 413.01
Monoclinic,
a = 10.6912 (1) Å
b = 14.0350 (2) Å
c = 12.2530 (2) Å
β = 92.203 (1)°
V = 1837.22 (4) Å3
Z = 4
Mo Kα radiation
μ = 1.43 mm−1
T = 100 K
0.41 × 0.39 × 0.08 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.592, T max = 0.894
16491 measured reflections
4007 independent reflections
3593 reflections with I > 2σ(I)
R int = 0.024
Refinement
R[F 2 > 2σ(F 2)] = 0.023
wR(F 2) = 0.061
S = 1.08
4007 reflections
218 parameters
2 restraints
H-atom parameters constrained
Δρmax = 0.37 e Å−3
Δρmin = −0.26 e Å−3
Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050889/is2639sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050889/is2639Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C4—H4⋯O1i | 0.95 | 2.40 | 3.211 (2) | 144 |
| C7—H7B⋯O1i | 0.98 | 2.33 | 3.248 (2) | 155 |
| C7—H7C⋯S2ii | 0.98 | 2.83 | 3.7021 (18) | 149 |
| C8—H8B⋯N5ii | 0.99 | 2.55 | 3.367 (2) | 140 |
| C13—H13A⋯N4 | 0.99 | 2.58 | 3.181 (2) | 119 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors thank the University of Malaya for funding this study (UMRG grant RG024/09BIO).
supplementary crystallographic information
Comment
The title compound is a mixed-ligand copper(II) complex with isothiocyanate and the Schiff base 2-morpholino-N-[1-(2-pyridyl)ethylidene]ethanamine. The geometry of the complex is slightly distorted square-pyramidal (τ = 0.05) with the N,N',N"-tridentate Schiff base and one SCN ligand at the basal positions, while the apical position is occupied by a second SCN ligand. This arrangement has been observed in some other mixed-ligand copper(II) complexes (Drew et al., 2009; You et al., 2006; Yue et al., 2005). In the crystal structure, the C—H···N, C—H···O and C—H···S interactions within the range for normal hydrogen bonds link the adjacent molecules into layers parallel to the ac plane (Fig. 2). An intramolecular C—H···N hydrogen bonding is also observed. Moreover, the aromatic rings of each two molecules related by the symmetry -x + 2, -y, -z + 1, are arranged in an antiparallel manner with centroid-centroid separation of 3.9412 (9) Å, indicative of a weak π–π interaction.
Experimental
A mixture of 2-acetylpyridine (0.20 g, 1.65 mmol) and 4-(2-aminoethyl)morpholine (0.21 g, 1.65 mmol) in ethanol (20 ml) was refluxed for 2 hr followed by addition of a solution of copper(II) acetate monohydrate (0.33 g, 1.65 mmol) and sodium thiocyanete (0.134 g, 1.65 mmol) in a minimum amount of ethanol. The resulting solution was refluxed for 30 min, then left at room temperature. The crystals of the title complex were obtained in a week.
Refinement
The hydrogen atoms were placed at calculated positions (C—H 0.95–0.99 Å) and were treated as riding on their parent atoms with Uiso(H) set to 1.2 or 1.5Ueq(C). An additional rigid-bond type restraint (DELU in SHELXL97) was placed on the displacement parameters of S1 and C14; S2 and C15.
Figures
Fig. 1.
Thermal ellipsoid plot of the title compound at the 50% probability level. Hydrogen atoms are drawn as spheres of arbitrary radii.
Fig. 2.
The packing diagram of the title compound, viewed down the crystallographic a axis.
Crystal data
| [Cu(NCS)2(C13H19N3O)] | F(000) = 852 |
| Mr = 413.01 | Dx = 1.493 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 7443 reflections |
| a = 10.6912 (1) Å | θ = 2.2–30.7° |
| b = 14.0350 (2) Å | µ = 1.43 mm−1 |
| c = 12.2530 (2) Å | T = 100 K |
| β = 92.203 (1)° | Plate, blue |
| V = 1837.22 (4) Å3 | 0.41 × 0.39 × 0.08 mm |
| Z = 4 |
Data collection
| Bruker APEXII CCD diffractometer | 4007 independent reflections |
| Radiation source: fine-focus sealed tube | 3593 reflections with I > 2σ(I) |
| graphite | Rint = 0.024 |
| φ and ω scans | θmax = 27.0°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −13→13 |
| Tmin = 0.592, Tmax = 0.894 | k = −17→17 |
| 16491 measured reflections | l = −15→15 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.023 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.061 | H-atom parameters constrained |
| S = 1.08 | w = 1/[σ2(Fo2) + (0.0264P)2 + 0.8835P] where P = (Fo2 + 2Fc2)/3 |
| 4007 reflections | (Δ/σ)max = 0.001 |
| 218 parameters | Δρmax = 0.37 e Å−3 |
| 2 restraints | Δρmin = −0.26 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cu1 | 0.828576 (17) | 0.205404 (13) | 0.447661 (15) | 0.01426 (6) | |
| S1 | 0.54717 (4) | −0.02085 (3) | 0.29655 (4) | 0.02655 (11) | |
| S2 | 1.11219 (4) | 0.39163 (3) | 0.33440 (4) | 0.02849 (11) | |
| O1 | 0.42152 (11) | 0.29240 (8) | 0.55167 (10) | 0.0219 (3) | |
| N1 | 0.99124 (12) | 0.13295 (9) | 0.43945 (10) | 0.0152 (3) | |
| N2 | 0.92988 (12) | 0.27488 (9) | 0.55693 (10) | 0.0153 (3) | |
| N3 | 0.68518 (12) | 0.28625 (9) | 0.50715 (11) | 0.0155 (3) | |
| N4 | 0.72317 (13) | 0.11286 (10) | 0.37153 (11) | 0.0194 (3) | |
| N5 | 0.87234 (14) | 0.31121 (10) | 0.31479 (11) | 0.0212 (3) | |
| C1 | 1.01523 (15) | 0.05728 (11) | 0.37750 (12) | 0.0176 (3) | |
| H1 | 0.9486 | 0.0289 | 0.3355 | 0.021* | |
| C2 | 1.13462 (16) | 0.01887 (12) | 0.37269 (13) | 0.0204 (3) | |
| H2 | 1.1497 | −0.0345 | 0.3273 | 0.024* | |
| C3 | 1.23136 (16) | 0.05957 (12) | 0.43502 (14) | 0.0216 (3) | |
| H3 | 1.3138 | 0.0346 | 0.4328 | 0.026* | |
| C4 | 1.20628 (15) | 0.13735 (12) | 0.50084 (13) | 0.0200 (3) | |
| H4 | 1.2711 | 0.1659 | 0.5449 | 0.024* | |
| C5 | 1.08541 (15) | 0.17262 (11) | 0.50118 (12) | 0.0163 (3) | |
| C6 | 1.04657 (15) | 0.25572 (11) | 0.56749 (12) | 0.0166 (3) | |
| C7 | 1.13919 (16) | 0.30782 (13) | 0.63899 (14) | 0.0233 (4) | |
| H7A | 1.1033 | 0.3688 | 0.6612 | 0.035* | |
| H7B | 1.2152 | 0.3196 | 0.5989 | 0.035* | |
| H7C | 1.1600 | 0.2694 | 0.7040 | 0.035* | |
| C8 | 0.86732 (15) | 0.35203 (11) | 0.61333 (13) | 0.0182 (3) | |
| H8A | 0.9224 | 0.4087 | 0.6188 | 0.022* | |
| H8B | 0.8471 | 0.3318 | 0.6880 | 0.022* | |
| C9 | 0.74783 (15) | 0.37566 (11) | 0.54728 (13) | 0.0184 (3) | |
| H9A | 0.6903 | 0.4117 | 0.5934 | 0.022* | |
| H9B | 0.7681 | 0.4163 | 0.4843 | 0.022* | |
| C10 | 0.62870 (15) | 0.23026 (11) | 0.59640 (13) | 0.0178 (3) | |
| H10A | 0.6913 | 0.2230 | 0.6575 | 0.021* | |
| H10B | 0.6070 | 0.1658 | 0.5688 | 0.021* | |
| C11 | 0.51185 (15) | 0.27710 (12) | 0.63883 (13) | 0.0204 (3) | |
| H11A | 0.4754 | 0.2359 | 0.6949 | 0.024* | |
| H11B | 0.5344 | 0.3388 | 0.6734 | 0.024* | |
| C12 | 0.47049 (16) | 0.35294 (12) | 0.47023 (14) | 0.0223 (3) | |
| H12A | 0.4932 | 0.4154 | 0.5029 | 0.027* | |
| H12B | 0.4059 | 0.3637 | 0.4115 | 0.027* | |
| C13 | 0.58532 (15) | 0.30782 (12) | 0.42254 (13) | 0.0191 (3) | |
| H13A | 0.5604 | 0.2481 | 0.3847 | 0.023* | |
| H13B | 0.6193 | 0.3515 | 0.3676 | 0.023* | |
| C14 | 0.65038 (15) | 0.05637 (11) | 0.34076 (12) | 0.0165 (3) | |
| C15 | 0.97181 (16) | 0.34563 (11) | 0.32179 (13) | 0.0190 (3) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cu1 | 0.01509 (10) | 0.01341 (10) | 0.01417 (10) | −0.00117 (7) | −0.00099 (7) | −0.00142 (7) |
| S1 | 0.0282 (2) | 0.0203 (2) | 0.0307 (2) | −0.00934 (17) | −0.00451 (18) | −0.00294 (18) |
| S2 | 0.0273 (2) | 0.0211 (2) | 0.0369 (3) | −0.00521 (17) | −0.00168 (19) | 0.00639 (19) |
| O1 | 0.0166 (6) | 0.0241 (6) | 0.0251 (6) | −0.0018 (5) | 0.0010 (5) | 0.0008 (5) |
| N1 | 0.0182 (7) | 0.0140 (6) | 0.0135 (6) | −0.0012 (5) | 0.0005 (5) | 0.0014 (5) |
| N2 | 0.0179 (7) | 0.0143 (6) | 0.0137 (6) | −0.0018 (5) | 0.0007 (5) | −0.0003 (5) |
| N3 | 0.0163 (7) | 0.0152 (6) | 0.0150 (6) | −0.0016 (5) | −0.0008 (5) | 0.0012 (5) |
| N4 | 0.0196 (7) | 0.0183 (7) | 0.0200 (7) | −0.0007 (5) | −0.0014 (5) | −0.0012 (6) |
| N5 | 0.0269 (8) | 0.0199 (7) | 0.0167 (7) | 0.0000 (6) | 0.0007 (6) | 0.0027 (5) |
| C1 | 0.0235 (8) | 0.0150 (7) | 0.0141 (7) | −0.0014 (6) | −0.0007 (6) | 0.0014 (6) |
| C2 | 0.0271 (9) | 0.0164 (8) | 0.0178 (8) | 0.0031 (6) | 0.0014 (6) | −0.0001 (6) |
| C3 | 0.0210 (8) | 0.0202 (8) | 0.0236 (8) | 0.0032 (6) | 0.0017 (7) | 0.0033 (7) |
| C4 | 0.0182 (8) | 0.0205 (8) | 0.0212 (8) | −0.0008 (6) | −0.0016 (6) | 0.0011 (7) |
| C5 | 0.0186 (8) | 0.0162 (7) | 0.0142 (7) | −0.0019 (6) | 0.0007 (6) | 0.0013 (6) |
| C6 | 0.0197 (8) | 0.0168 (7) | 0.0134 (7) | −0.0025 (6) | 0.0013 (6) | −0.0003 (6) |
| C7 | 0.0183 (8) | 0.0284 (9) | 0.0231 (8) | −0.0039 (7) | −0.0007 (7) | −0.0088 (7) |
| C8 | 0.0192 (8) | 0.0170 (7) | 0.0184 (8) | −0.0017 (6) | 0.0010 (6) | −0.0053 (6) |
| C9 | 0.0191 (8) | 0.0140 (7) | 0.0223 (8) | −0.0018 (6) | 0.0023 (6) | −0.0015 (6) |
| C10 | 0.0194 (8) | 0.0162 (7) | 0.0178 (8) | −0.0020 (6) | −0.0001 (6) | 0.0018 (6) |
| C11 | 0.0187 (8) | 0.0229 (8) | 0.0196 (8) | −0.0028 (6) | 0.0013 (6) | −0.0002 (7) |
| C12 | 0.0212 (9) | 0.0201 (8) | 0.0255 (9) | 0.0018 (6) | −0.0015 (7) | 0.0036 (7) |
| C13 | 0.0199 (8) | 0.0207 (8) | 0.0164 (8) | 0.0011 (6) | −0.0026 (6) | 0.0019 (6) |
| C14 | 0.0191 (8) | 0.0150 (7) | 0.0154 (7) | 0.0008 (5) | −0.0001 (6) | 0.0005 (6) |
| C15 | 0.0276 (8) | 0.0142 (7) | 0.0154 (7) | 0.0016 (6) | 0.0013 (6) | 0.0029 (6) |
Geometric parameters (Å, °)
| Cu1—N4 | 1.9356 (14) | C3—H3 | 0.9500 |
| Cu1—N2 | 1.9506 (13) | C4—C5 | 1.384 (2) |
| Cu1—N1 | 2.0204 (13) | C4—H4 | 0.9500 |
| Cu1—N3 | 2.0627 (13) | C5—C6 | 1.490 (2) |
| Cu1—N5 | 2.2657 (14) | C6—C7 | 1.489 (2) |
| S1—C14 | 1.6247 (16) | C7—H7A | 0.9800 |
| S2—C15 | 1.6357 (18) | C7—H7B | 0.9800 |
| O1—C12 | 1.425 (2) | C7—H7C | 0.9800 |
| O1—C11 | 1.428 (2) | C8—C9 | 1.522 (2) |
| N1—C1 | 1.336 (2) | C8—H8A | 0.9900 |
| N1—C5 | 1.355 (2) | C8—H8B | 0.9900 |
| N2—C6 | 1.278 (2) | C9—H9A | 0.9900 |
| N2—C8 | 1.460 (2) | C9—H9B | 0.9900 |
| N3—C13 | 1.4904 (19) | C10—C11 | 1.521 (2) |
| N3—C10 | 1.493 (2) | C10—H10A | 0.9900 |
| N3—C9 | 1.4966 (19) | C10—H10B | 0.9900 |
| N4—C14 | 1.164 (2) | C11—H11A | 0.9900 |
| N5—C15 | 1.168 (2) | C11—H11B | 0.9900 |
| C1—C2 | 1.389 (2) | C12—C13 | 1.518 (2) |
| C1—H1 | 0.9500 | C12—H12A | 0.9900 |
| C2—C3 | 1.385 (2) | C12—H12B | 0.9900 |
| C2—H2 | 0.9500 | C13—H13A | 0.9900 |
| C3—C4 | 1.390 (2) | C13—H13B | 0.9900 |
| N4—Cu1—N2 | 164.55 (6) | C6—C7—H7B | 109.5 |
| N4—Cu1—N1 | 97.15 (5) | H7A—C7—H7B | 109.5 |
| N2—Cu1—N1 | 80.18 (5) | C6—C7—H7C | 109.5 |
| N4—Cu1—N3 | 96.46 (5) | H7A—C7—H7C | 109.5 |
| N2—Cu1—N3 | 83.28 (5) | H7B—C7—H7C | 109.5 |
| N1—Cu1—N3 | 161.32 (5) | N2—C8—C9 | 107.46 (12) |
| N4—Cu1—N5 | 103.06 (5) | N2—C8—H8A | 110.2 |
| N2—Cu1—N5 | 92.35 (5) | C9—C8—H8A | 110.2 |
| N1—Cu1—N5 | 95.29 (5) | N2—C8—H8B | 110.2 |
| N3—Cu1—N5 | 94.03 (5) | C9—C8—H8B | 110.2 |
| C12—O1—C11 | 110.92 (12) | H8A—C8—H8B | 108.5 |
| C1—N1—C5 | 119.27 (14) | N3—C9—C8 | 110.35 (12) |
| C1—N1—Cu1 | 127.79 (11) | N3—C9—H9A | 109.6 |
| C5—N1—Cu1 | 112.82 (10) | C8—C9—H9A | 109.6 |
| C6—N2—C8 | 124.83 (13) | N3—C9—H9B | 109.6 |
| C6—N2—Cu1 | 118.59 (11) | C8—C9—H9B | 109.6 |
| C8—N2—Cu1 | 116.31 (10) | H9A—C9—H9B | 108.1 |
| C13—N3—C10 | 108.51 (12) | N3—C10—C11 | 112.55 (13) |
| C13—N3—C9 | 110.96 (12) | N3—C10—H10A | 109.1 |
| C10—N3—C9 | 112.90 (12) | C11—C10—H10A | 109.1 |
| C13—N3—Cu1 | 112.84 (10) | N3—C10—H10B | 109.1 |
| C10—N3—Cu1 | 107.24 (9) | C11—C10—H10B | 109.1 |
| C9—N3—Cu1 | 104.36 (9) | H10A—C10—H10B | 107.8 |
| C14—N4—Cu1 | 169.48 (13) | O1—C11—C10 | 110.49 (13) |
| C15—N5—Cu1 | 115.52 (12) | O1—C11—H11A | 109.6 |
| N1—C1—C2 | 121.97 (15) | C10—C11—H11A | 109.6 |
| N1—C1—H1 | 119.0 | O1—C11—H11B | 109.6 |
| C2—C1—H1 | 119.0 | C10—C11—H11B | 109.6 |
| C3—C2—C1 | 118.98 (15) | H11A—C11—H11B | 108.1 |
| C3—C2—H2 | 120.5 | O1—C12—C13 | 110.18 (13) |
| C1—C2—H2 | 120.5 | O1—C12—H12A | 109.6 |
| C2—C3—C4 | 119.16 (15) | C13—C12—H12A | 109.6 |
| C2—C3—H3 | 120.4 | O1—C12—H12B | 109.6 |
| C4—C3—H3 | 120.4 | C13—C12—H12B | 109.6 |
| C5—C4—C3 | 118.94 (15) | H12A—C12—H12B | 108.1 |
| C5—C4—H4 | 120.5 | N3—C13—C12 | 112.65 (13) |
| C3—C4—H4 | 120.5 | N3—C13—H13A | 109.1 |
| N1—C5—C4 | 121.67 (15) | C12—C13—H13A | 109.1 |
| N1—C5—C6 | 114.16 (13) | N3—C13—H13B | 109.1 |
| C4—C5—C6 | 124.17 (14) | C12—C13—H13B | 109.1 |
| N2—C6—C7 | 125.52 (15) | H13A—C13—H13B | 107.8 |
| N2—C6—C5 | 113.64 (14) | N4—C14—S1 | 178.86 (15) |
| C7—C6—C5 | 120.83 (14) | N5—C15—S2 | 178.35 (15) |
| C6—C7—H7A | 109.5 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C4—H4···O1i | 0.95 | 2.40 | 3.211 (2) | 144 |
| C7—H7B···O1i | 0.98 | 2.33 | 3.248 (2) | 155 |
| C7—H7C···S2ii | 0.98 | 2.83 | 3.7021 (18) | 149 |
| C8—H8B···N5ii | 0.99 | 2.55 | 3.367 (2) | 140 |
| C13—H13A···N4 | 0.99 | 2.58 | 3.181 (2) | 119 |
Symmetry codes: (i) x+1, y, z; (ii) x, −y+1/2, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: IS2639).
References
- Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
- Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Drew, M. G. B., Das, D., De, S. & Datta, D. (2009). Inorg. Chim. Acta, 362, 1501–1505.
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
- You, Z.-L., Wang, J. & Han, X. (2006). Acta Cryst. E62, m860–m861.
- Yue, G.-R., Xu, X.-J., Shi, Y.-Z. & Feng, L. (2005). Acta Cryst. E61, m693–m694.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050889/is2639sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050889/is2639Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


