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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Dec 11;67(Pt 1):o73. doi: 10.1107/S1600536810051226

(5S)-3-Chloro-4-(2,5-dihydro-1H-pyrrol-1-yl)-5-[(1R,2S,5R)-2-isopropyl-5-methyl­cyclo­hex­yloxy]furan-2(5H)-one

Jian-Hua Fu a, Zhao-Yang Wang a,*, Fu-Ling Xue a, Jing-Pei Huo a
PMCID: PMC3050327  PMID: 21522785

Abstract

The title compound, C18H26ClNO3, was obtained via a tandem asymmetric Michael addition–elimination reaction of 3,4-dichloro-5-(S)-(l-menth­yloxy)furan-2(5H)-one and 2,5-di­hydro-1H-pyrrole in the presence of potassium fluoride. In the mol­ecule, the nearly planar dihydro­pyrrole ring [maximum atomic deviation = 0.019 (3) Å] is oriented at a dihedral angle of 10.73 (8)° to the the nearly planar furan­one ring [maximum atomic deviation = 0.011 (2) Å]; the cyclo­hexane ring adopts a chair conformation. In the crystal, mol­ecules are linked via weak inter­molecular C—H⋯O hydrogen bonds, forming supra­molecular chains running along the b axis.

Related literature

The title compound is a derivative of 4-amino-2(5H)-furan­one. For the biological activity of 4-amino-2(5H)-furan­ones, see: Lattmann et al. (1999 ▶, 2005 ▶, 2006 ▶); Rowland et al. (2007 ▶); Kim et al. (2002 ▶). For asymmetric Michael addition reactions of 2(5H)-furan­one, see: He et al. (2006 ▶). For the synthesis of the title compound, see: Song et al. (2009 ▶).graphic file with name e-67-00o73-scheme1.jpg

Experimental

Crystal data

  • C18H26ClNO3

  • M r = 339.85

  • Orthorhombic, Inline graphic

  • a = 7.192 (2) Å

  • b = 9.622 (3) Å

  • c = 27.534 (9) Å

  • V = 1905.4 (10) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.21 mm−1

  • T = 298 K

  • 0.23 × 0.20 × 0.16 mm

Data collection

  • Bruker APEXII area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.952, T max = 0.966

  • 9627 measured reflections

  • 3363 independent reflections

  • 1708 reflections with I > 2σ(I)

  • R int = 0.053

Refinement

  • R[F 2 > 2σ(F 2)] = 0.052

  • wR(F 2) = 0.129

  • S = 1.02

  • 3363 reflections

  • 211 parameters

  • H-atom parameters constrained

  • Δρmax = 0.11 e Å−3

  • Δρmin = −0.14 e Å−3

  • Absolute structure: Flack (1983 ▶), 1398 Friedel pairs

  • Flack parameter: 0.14 (12)

Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810051226/xu5106sup1.cif

e-67-00o73-sup1.cif (19.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810051226/xu5106Isup2.hkl

e-67-00o73-Isup2.hkl (165KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C16—H16⋯O2i 0.93 2.42 3.320 (6) 164

Symmetry code: (i) Inline graphic.

Acknowledgments

The work was supported by the National Natural Science Foundation of China (grant No. 20772035) and the Natural Science Foundation of Guangdong Province, China (grant No. 5300082).

supplementary crystallographic information

Comment

Molecules possessing 2(5H)-furanone moiety, are extremely useful heterocyclic compounds, due to their significant biological activities, such as antibacterial, anti-inflammatory and antitumor. (Lattmann et al., 2005; Rowland et al., 2007; Kim et al., 2002). 5-Alkoxy-3,4-dihalo-2(5H)-furanones, being a kind of synthons, are widely used in asymmetric and pharmaceutical synthesis reactions. (Lattmann et al., 2006). At the same time, 4-amino-2(5H)-furanones are showing an antibiotic activity against MRSA (Lattmann et al., 1999; Lattmann et al., 2006). Therefore, we are interested in the tandem Michael addition-elimination reaction of the chiral synthon 3,4-dichloro-5-(S)-(l-menthyloxy)-2(5H)-furanone and 2,5-dihydro-1H-pyrrole in the present of potassium fluoride.

The structure of the title compound (I) is illustrated in Fig. 1. The crystal structure of the title compound, which has four chiral centers (C4(S), C5(R), C6(S), C9(R)), contains a five-membered furanone ring and a six-membered ring connected each other via C4—O3—C5 ether bond. The furanone ring of C4—O1—C1—C2—C3 is approximately planar, whereas the six-membered ring displays a chair conformation.

Experimental

The precursor 3,4-dichloro-5-(S)-(l-menthyloxy)-2(5H)-furanone was prepared according to the literature procedure (Song et al., 2009). After the mixture of 3,4-dichloro-5-(S)-(l-menthyloxy)-2(5H)-furanone (2.0 mmol) and potassium fluoride (6.0 mmol) was dissolved in absolute tetrahydrofuran (2.0 mL) under nitrogen atmosphere, tetrahydrofuran solution of 2,5-dihydro-1H-pyrrole (2.0 mmol) was added. The reaction was carried out under the stirring at room temperature for 6 h. Once the reaction was complete, the solvents were removed under reduced pressure. The residual solid was dissolved in dichloromethane. Then the combined organic layers from extraction were concentrated under reduced pressure, and the crude product was purified by silica gel column chromatography with the gradient mixture of petroleum ether and ethyl acetate to give the product yielding (I) 0.561 g (82.4%).

Refinement

H atoms were positioned in calculated positions with C—H = 0.93-0.98 Å and were refined using a riding model, with Uiso(H) = 1.5Ueq(C) for methyl and 1.2Ueq(C) for the others.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound showing the atom-labelling scheme. Ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Perspective view of the crystal packing.

Crystal data

C18H26ClNO3 F(000) = 728
Mr = 339.85 Dx = 1.185 Mg m−3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 1222 reflections
a = 7.192 (2) Å θ = 2.2–17.5°
b = 9.622 (3) Å µ = 0.21 mm−1
c = 27.534 (9) Å T = 298 K
V = 1905.4 (10) Å3 Block, colourless
Z = 4 0.23 × 0.20 × 0.16 mm

Data collection

Bruker APEXII area-detector diffractometer 3363 independent reflections
Radiation source: fine-focus sealed tube 1708 reflections with I > 2σ(I)
graphite Rint = 0.053
φ and ω scan θmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −6→8
Tmin = 0.952, Tmax = 0.966 k = −10→11
9627 measured reflections l = −32→28

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052 H-atom parameters constrained
wR(F2) = 0.129 w = 1/[σ2(Fo2) + (0.0439P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02 (Δ/σ)max < 0.001
3363 reflections Δρmax = 0.11 e Å−3
211 parameters Δρmin = −0.14 e Å−3
0 restraints Absolute structure: Flack (1983), 1398 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: 0.14 (12)

Special details

Experimental. Data for (I): [α]20°D = -45.0° (c 0.557, CH3CH2OH); 1H NMR (400 MHz, CDCl3, TMS): 0.791 (3H, d, J = 6.8 Hz, CH3), 0.823-0.937 (7H, m, CH, 2CH3), 0.945-1.181 (2H, m, CH2), 1.298-1.457 (2H, m, 2CH), 1.623-1.704 (2H, m, CH2), 2.137-2.210 (2H, m, CH2), 3.576-3.641 (1H, ddd, J = 4.4 Hz, J = 4.4 Hz,J = 4.4 Hz,CH), 3.997-4.970 (4H, m, 2CH2), 5.731-5.884 (3H, m, 3CH), ESI-MS, m/z (%): Calcd for C18H27ClNO3+([M+H]+): 340.16(100.0), 342.16(32.7), Found: 340.24 (100.0), 342.32(38.7).
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.78504 (18) 0.24214 (12) 0.34421 (3) 0.1169 (5)
C3 0.7443 (5) 0.2768 (4) 0.24451 (11) 0.0695 (9)
C4 0.7076 (5) 0.1802 (4) 0.20226 (12) 0.0744 (10)
H4 0.5952 0.2084 0.1847 0.089*
C5 0.8243 (6) 0.1400 (4) 0.12119 (10) 0.0775 (11)
H5 0.7375 0.2071 0.1070 0.093*
C1 0.7075 (6) 0.0576 (5) 0.27315 (13) 0.0840 (11)
C2 0.7477 (5) 0.1979 (4) 0.28492 (11) 0.0773 (10)
C6 1.0128 (6) 0.1530 (5) 0.09539 (12) 0.0901 (13)
H6 1.0961 0.0856 0.1108 0.108*
C10 0.7420 (7) −0.0036 (4) 0.11707 (11) 0.1015 (13)
H10A 0.6212 −0.0050 0.1327 0.122*
H10B 0.8216 −0.0695 0.1338 0.122*
C7 0.9896 (8) 0.1062 (5) 0.04242 (13) 0.1185 (18)
H7A 0.9093 0.1714 0.0256 0.142*
H7B 1.1099 0.1076 0.0265 0.142*
C11 1.1050 (6) 0.2946 (6) 0.10072 (14) 0.1047 (15)
H11 1.0932 0.3206 0.1350 0.126*
C9 0.7204 (10) −0.0480 (5) 0.06354 (14) 0.1288 (18)
H9 0.6340 0.0161 0.0476 0.155*
C8 0.9082 (10) −0.0374 (7) 0.03860 (16) 0.140 (2)
H8A 0.9932 −0.1035 0.0532 0.168*
H8B 0.8942 −0.0616 0.0046 0.168*
C14 1.0115 (8) 0.4096 (5) 0.07156 (16) 0.140 (2)
H14A 1.0309 0.3936 0.0375 0.210*
H14B 1.0641 0.4978 0.0804 0.210*
H14C 0.8805 0.4100 0.0783 0.210*
C13 1.3143 (7) 0.2870 (7) 0.08997 (15) 0.160 (2)
H13A 1.3696 0.2151 0.1093 0.241*
H13B 1.3712 0.3746 0.0977 0.241*
H13C 1.3329 0.2667 0.0562 0.241*
C12 0.6404 (13) −0.1951 (7) 0.06041 (19) 0.217 (4)
H12A 0.6598 −0.2313 0.0283 0.326*
H12B 0.5096 −0.1925 0.0673 0.326*
H12C 0.7017 −0.2537 0.0836 0.326*
C18 0.7548 (7) 0.4780 (4) 0.18901 (13) 0.0971 (12)
H18A 0.6422 0.4507 0.1721 0.117*
H18B 0.8618 0.4566 0.1689 0.117*
C15 0.7871 (6) 0.5142 (4) 0.27610 (13) 0.0967 (13)
H15A 0.6884 0.5045 0.2999 0.116*
H15B 0.9064 0.5059 0.2923 0.116*
C17 0.7505 (7) 0.6280 (4) 0.20278 (19) 0.1103 (14)
H17 0.7344 0.7001 0.1807 0.132*
C16 0.7720 (7) 0.6461 (5) 0.2495 (2) 0.1092 (14)
H16 0.7772 0.7329 0.2643 0.131*
N1 0.7681 (5) 0.4111 (3) 0.23671 (9) 0.0791 (9)
O3 0.8607 (3) 0.1789 (2) 0.17127 (7) 0.0767 (7)
O1 0.6832 (4) 0.0450 (2) 0.22383 (8) 0.0845 (8)
O2 0.6958 (5) −0.0440 (3) 0.29863 (9) 0.1111 (10)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.1428 (11) 0.1448 (9) 0.0630 (6) 0.0000 (9) −0.0027 (6) −0.0123 (6)
C3 0.057 (2) 0.086 (2) 0.065 (2) 0.002 (2) 0.0010 (19) −0.009 (2)
C4 0.067 (3) 0.089 (3) 0.068 (2) 0.002 (2) 0.002 (2) −0.0044 (19)
C5 0.084 (3) 0.096 (3) 0.053 (2) 0.012 (2) −0.0074 (19) −0.0018 (17)
C1 0.082 (3) 0.096 (3) 0.074 (3) 0.008 (3) 0.009 (2) 0.003 (2)
C2 0.072 (3) 0.100 (3) 0.061 (2) 0.005 (2) 0.001 (2) −0.0071 (19)
C6 0.082 (3) 0.132 (4) 0.056 (2) 0.024 (3) 0.001 (2) 0.000 (2)
C10 0.131 (4) 0.107 (3) 0.066 (2) −0.005 (3) −0.007 (3) −0.0180 (19)
C7 0.144 (5) 0.155 (5) 0.057 (2) 0.018 (4) 0.007 (3) −0.011 (3)
C11 0.093 (4) 0.161 (5) 0.060 (2) −0.010 (3) 0.009 (2) −0.007 (3)
C9 0.182 (6) 0.129 (4) 0.075 (3) −0.010 (4) −0.010 (4) −0.028 (3)
C8 0.193 (7) 0.155 (5) 0.071 (3) 0.011 (5) 0.012 (3) −0.038 (3)
C14 0.165 (6) 0.146 (4) 0.110 (3) −0.015 (4) 0.009 (4) 0.025 (3)
C13 0.098 (4) 0.294 (8) 0.088 (3) −0.019 (5) 0.027 (3) −0.011 (4)
C12 0.325 (10) 0.197 (6) 0.130 (4) −0.106 (7) 0.031 (5) −0.073 (4)
C18 0.097 (3) 0.098 (3) 0.097 (3) 0.007 (3) 0.010 (3) 0.010 (2)
C15 0.082 (3) 0.101 (3) 0.107 (3) −0.010 (3) −0.002 (3) −0.022 (3)
C17 0.106 (4) 0.085 (3) 0.141 (4) 0.004 (3) 0.015 (4) 0.016 (3)
C16 0.088 (3) 0.088 (3) 0.152 (4) −0.009 (3) 0.003 (3) −0.021 (3)
N1 0.081 (3) 0.088 (2) 0.0686 (17) 0.0027 (19) 0.0051 (18) −0.0100 (16)
O3 0.0764 (17) 0.1003 (17) 0.0532 (13) 0.0049 (14) 0.0025 (13) −0.0071 (12)
O1 0.097 (2) 0.0833 (17) 0.0735 (15) −0.0071 (15) 0.0035 (14) −0.0038 (13)
O2 0.136 (3) 0.103 (2) 0.0939 (18) 0.016 (2) 0.0152 (19) 0.0119 (16)

Geometric parameters (Å, °)

Cl1—C2 1.709 (3) C9—C8 1.518 (7)
C3—N1 1.321 (4) C9—C12 1.530 (7)
C3—C2 1.347 (4) C9—H9 0.9800
C3—C4 1.512 (4) C8—H8A 0.9700
C4—O3 1.393 (4) C8—H8B 0.9700
C4—O1 1.441 (4) C14—H14A 0.9600
C4—H4 0.9800 C14—H14B 0.9600
C5—O3 1.453 (3) C14—H14C 0.9600
C5—C10 1.507 (5) C13—H13A 0.9600
C5—C6 1.536 (5) C13—H13B 0.9600
C5—H5 0.9800 C13—H13C 0.9600
C1—O2 1.206 (4) C12—H12A 0.9600
C1—O1 1.375 (4) C12—H12B 0.9600
C1—C2 1.418 (5) C12—H12C 0.9600
C6—C11 1.522 (6) C18—N1 1.466 (4)
C6—C7 1.535 (5) C18—C17 1.492 (5)
C6—H6 0.9800 C18—H18A 0.9700
C10—C9 1.542 (5) C18—H18B 0.9700
C10—H10A 0.9700 C15—C16 1.469 (6)
C10—H10B 0.9700 C15—N1 1.476 (4)
C7—C8 1.504 (6) C15—H15A 0.9700
C7—H7A 0.9700 C15—H15B 0.9700
C7—H7B 0.9700 C17—C16 1.308 (5)
C11—C14 1.524 (6) C17—H17 0.9300
C11—C13 1.535 (6) C16—H16 0.9300
C11—H11 0.9800
N1—C3—C2 133.1 (3) C12—C9—H9 108.6
N1—C3—C4 119.9 (3) C10—C9—H9 108.6
C2—C3—C4 107.0 (3) C7—C8—C9 112.1 (5)
O3—C4—O1 109.9 (3) C7—C8—H8A 109.2
O3—C4—C3 109.8 (3) C9—C8—H8A 109.2
O1—C4—C3 105.0 (3) C7—C8—H8B 109.2
O3—C4—H4 110.7 C9—C8—H8B 109.2
O1—C4—H4 110.7 H8A—C8—H8B 107.9
C3—C4—H4 110.7 C11—C14—H14A 109.5
O3—C5—C10 112.2 (3) C11—C14—H14B 109.5
O3—C5—C6 105.0 (3) H14A—C14—H14B 109.5
C10—C5—C6 112.8 (4) C11—C14—H14C 109.5
O3—C5—H5 108.9 H14A—C14—H14C 109.5
C10—C5—H5 108.9 H14B—C14—H14C 109.5
C6—C5—H5 108.9 C11—C13—H13A 109.5
O2—C1—O1 119.6 (4) C11—C13—H13B 109.5
O2—C1—C2 130.8 (3) H13A—C13—H13B 109.5
O1—C1—C2 109.6 (3) C11—C13—H13C 109.5
C3—C2—C1 110.1 (3) H13A—C13—H13C 109.5
C3—C2—Cl1 130.7 (3) H13B—C13—H13C 109.5
C1—C2—Cl1 119.2 (3) C9—C12—H12A 109.5
C11—C6—C7 113.7 (4) C9—C12—H12B 109.5
C11—C6—C5 114.4 (3) H12A—C12—H12B 109.5
C7—C6—C5 108.6 (4) C9—C12—H12C 109.5
C11—C6—H6 106.5 H12A—C12—H12C 109.5
C7—C6—H6 106.5 H12B—C12—H12C 109.5
C5—C6—H6 106.5 N1—C18—C17 101.4 (3)
C5—C10—C9 111.4 (3) N1—C18—H18A 111.5
C5—C10—H10A 109.3 C17—C18—H18A 111.5
C9—C10—H10A 109.3 N1—C18—H18B 111.5
C5—C10—H10B 109.3 C17—C18—H18B 111.5
C9—C10—H10B 109.3 H18A—C18—H18B 109.3
H10A—C10—H10B 108.0 C16—C15—N1 102.0 (3)
C8—C7—C6 112.2 (4) C16—C15—H15A 111.4
C8—C7—H7A 109.2 N1—C15—H15A 111.4
C6—C7—H7A 109.2 C16—C15—H15B 111.4
C8—C7—H7B 109.2 N1—C15—H15B 111.4
C6—C7—H7B 109.2 H15A—C15—H15B 109.2
H7A—C7—H7B 107.9 C16—C17—C18 112.1 (4)
C6—C11—C14 114.0 (4) C16—C17—H17 123.9
C6—C11—C13 111.5 (5) C18—C17—H17 123.9
C14—C11—C13 111.4 (5) C17—C16—C15 112.5 (4)
C6—C11—H11 106.5 C17—C16—H16 123.7
C14—C11—H11 106.5 C15—C16—H16 123.7
C13—C11—H11 106.5 C3—N1—C18 124.5 (3)
C8—C9—C12 111.8 (5) C3—N1—C15 123.3 (3)
C8—C9—C10 108.9 (4) C18—N1—C15 111.7 (3)
C12—C9—C10 110.4 (4) C4—O3—C5 116.2 (3)
C8—C9—H9 108.6 C1—O1—C4 108.2 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C16—H16···O2i 0.93 2.42 3.320 (6) 164

Symmetry codes: (i) x, y+1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5106).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810051226/xu5106sup1.cif

e-67-00o73-sup1.cif (19.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810051226/xu5106Isup2.hkl

e-67-00o73-Isup2.hkl (165KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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