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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Dec 24;67(Pt 1):o207. doi: 10.1107/S1600536810052621

6-(4-Chloro­phen­yl)-2-isobutyl­imidazo[2,1-b][1,3,4]thia­diazole

Hoong-Kun Fun a,*,‡, Madhukar Hemamalini a, D Jagadeesh Prasad b, G K Nagaraja b, V V Anitha b
PMCID: PMC3050343  PMID: 21522707

Abstract

In the title compound, C14H14ClN3S, the imidazo[2,1-b][1,3,4]thia­diazole system is essentially planar, with a maximum deviation of 0.006 (2) Å. The dihedral angle between the imidazo[2,1-b][1,3,4]thia­diazole and chloro­phenyl rings is 5.07 (8)°. In the crystal, there are no classical hydrogen bonds but stabilization is provided by weak π–π [centroid–centroid distance = 3.5697 (11) Å] and C—H⋯π inter­actions.

Related literature

For applications of imidazo [2,1-b]-1,3,4-thia­diazole derivatives, see: Terzioglu & Gursoy (2003 ▶); Kolavi et al. (2006 ▶); Gadad et al. (2000 ▶); Andotra et al. (1997 ▶); Khazi et al. (1996 ▶); Andreani et al. (1982 ▶,1987 ▶,1991 ▶); Eberle & Robert (1977 ▶).graphic file with name e-67-0o207-scheme1.jpg

Experimental

Crystal data

  • C14H14ClN3S

  • M r = 291.79

  • Monoclinic, Inline graphic

  • a = 5.7552 (1) Å

  • b = 26.4052 (5) Å

  • c = 9.7662 (2) Å

  • β = 101.388 (1)°

  • V = 1454.92 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.40 mm−1

  • T = 296 K

  • 0.47 × 0.31 × 0.28 mm

Data collection

  • Bruker SMART APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) ▶ T min = 0.835, T max = 0.897

  • 12320 measured reflections

  • 3353 independent reflections

  • 2646 reflections with I > 2σ(I)

  • R int = 0.023

Refinement

  • R[F 2 > 2σ(F 2)] = 0.050

  • wR(F 2) = 0.135

  • S = 1.05

  • 3353 reflections

  • 172 parameters

  • H-atom parameters constrained

  • Δρmax = 0.23 e Å−3

  • Δρmin = −0.32 e Å−3

Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810052621/ng5089sup1.cif

e-67-0o207-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052621/ng5089Isup2.hkl

e-67-0o207-Isup2.hkl (164.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg3 is the centroid of the C1–C6 ring.

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C11—H11B⋯Cg3i 0.97 2.70 3.544 (2) 145

Symmetry code: (i) Inline graphic.

Acknowledgments

HKF and MH thank the Malaysian Government and Universiti Sains Malaysia for the Research University grant No. 1001/PFIZIK/811160. MH also thanks Universiti Sains Malaysia for a post-doctoral research fellowship.

supplementary crystallographic information

Comment

Imidazo [2,1-b]-1,3,4-thiadiazole derivatives are found to be biologically active compounds possessing anticancer (Terzioglu, 2003), antitubercular (Kolavi et al., 2006), antibacterial (Gadad et al., 2000), antifungal (Andotra et al., 1997), anticonvulsant, analgesic (Khazi et al., 1996), anti-inflammatory (Andreani et al., 1982), diuretic (Andreani et al., 1991) and herbicidal activities (Andreani et al., 1991). Moreover 1,3,4-thiadiazoles have many interesting biological activities, for example, 2-amino-5-(trifluoromethylphenyl alkyl)-1,3,4 thidadiazoles are used in the treatment of insomnia and anxiety (Eberle & Robert, 1977).

The asymmetric unit of the title compound is shown in Fig. 1. The imidazo[2,1-b] [1,3,4]thiadiazole (S1/N1–N3/C7–C10) ring is essentially planar, with a maximum deviation of 0.006 (2) Å for atom N3. The dihedral angle between the imidazo[2,1-b][1,3,4]thiadiazole (S1/N1–N3/C7–C10) ring and the chlorophenyl ring (C1–C6) is 5.07 (8)°.

In the crystal structure (Fig. 2), there are no classical hydrogen bonds but stabilization is provided by weak π–π interactions between the imidazole rings (N1–N2/C7–C8/C10) [centroid-to-centroid (2-x, -y, 2-z) distance = 3.5697 (11) Å]. Furthermore, the crystal structure is stabilized by C—H···π interactions (Table 1), involving the (C1–C6)(centroid Cg3) ring.

Experimental

5-Isobutyl-1,3,4-thiadiazole-2-amine( 1 equivalent) and 4-chlorophenacyl bromide (1 equivalent) are refluxed with ethanol for 4 hrs. The solvent was then distilled off and the reaction mass was poured onto crushed ice. The resulting solid, 6-(4-chlorophenyl)-2-isobutylimidazo[2,1-b] [1,3,4]thiadiazole, that separated out was filtered and dried. The compound was recrystallized using ethanol and DMF mixture. M.pt. 121–126 °C.

Refinement

All the H atoms were positioned geometrically [C–H = 0.93–0.97 Å] and were refined using a riding model, with Uiso(H) = 1.2 or 1.5 Ueq(C).

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of the title compound, showing 50% probability displacement ellipsoids and the atom-numbering scheme.

Fig. 2.

Fig. 2.

The crystal packing of the title compound (I).

Crystal data

C14H14ClN3S F(000) = 608
Mr = 291.79 Dx = 1.332 Mg m−3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 5357 reflections
a = 5.7552 (1) Å θ = 2.3–28.5°
b = 26.4052 (5) Å µ = 0.40 mm−1
c = 9.7662 (2) Å T = 296 K
β = 101.388 (1)° Block, colourless
V = 1454.92 (5) Å3 0.47 × 0.31 × 0.28 mm
Z = 4

Data collection

Bruker SMART APEXII CCD area-detector diffractometer 3353 independent reflections
Radiation source: fine-focus sealed tube 2646 reflections with I > 2σ(I)
graphite Rint = 0.023
φ and ω scans θmax = 27.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −6→7
Tmin = 0.835, Tmax = 0.897 k = −23→34
12320 measured reflections l = −12→10

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135 H-atom parameters constrained
S = 1.05 w = 1/[σ2(Fo2) + (0.0605P)2 + 0.4615P] where P = (Fo2 + 2Fc2)/3
3353 reflections (Δ/σ)max < 0.001
172 parameters Δρmax = 0.23 e Å−3
0 restraints Δρmin = −0.32 e Å−3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.79047 (16) −0.15309 (3) 0.31411 (7) 0.0936 (3)
S1 0.87829 (9) 0.11339 (2) 0.99277 (7) 0.0661 (2)
N1 0.8370 (3) 0.03334 (6) 0.79472 (18) 0.0536 (4)
N2 1.1813 (3) 0.05331 (6) 0.93125 (17) 0.0517 (4)
N3 1.3144 (3) 0.08204 (7) 1.03504 (19) 0.0609 (5)
C1 0.7404 (4) −0.04026 (8) 0.5763 (2) 0.0544 (5)
H1A 0.6230 −0.0182 0.5931 0.065*
C2 0.6859 (4) −0.07545 (8) 0.4702 (2) 0.0610 (5)
H2A 0.5347 −0.0767 0.4147 0.073*
C3 0.8587 (4) −0.10854 (8) 0.4479 (2) 0.0617 (5)
C4 1.0837 (4) −0.10677 (9) 0.5281 (3) 0.0686 (6)
H4A 1.1991 −0.1294 0.5116 0.082*
C5 1.1370 (4) −0.07123 (8) 0.6331 (2) 0.0613 (5)
H5A 1.2889 −0.0701 0.6877 0.074*
C6 0.9657 (3) −0.03694 (7) 0.65853 (19) 0.0471 (4)
C7 1.0177 (3) 0.00199 (7) 0.76767 (19) 0.0468 (4)
C8 0.9462 (3) 0.06335 (7) 0.8937 (2) 0.0507 (4)
C9 1.1782 (4) 0.11490 (8) 1.0758 (2) 0.0578 (5)
C10 1.2301 (3) 0.01388 (8) 0.8507 (2) 0.0544 (5)
H10A 1.3760 −0.0015 0.8522 0.065*
C11 1.2613 (5) 0.15173 (9) 1.1910 (2) 0.0731 (6)
H11A 1.4291 0.1461 1.2261 0.088*
H11B 1.1795 0.1445 1.2666 0.088*
C12 1.2254 (5) 0.20690 (10) 1.1527 (3) 0.0813 (7)
H12A 1.0588 0.2118 1.1082 0.098*
C13 1.2777 (9) 0.23946 (14) 1.2842 (4) 0.1384 (16)
H13A 1.1748 0.2297 1.3459 0.208*
H13B 1.2516 0.2745 1.2591 0.208*
H13C 1.4397 0.2347 1.3303 0.208*
C14 1.3764 (8) 0.22228 (13) 1.0505 (4) 0.1297 (15)
H14A 1.3400 0.2011 0.9691 0.195*
H14B 1.5407 0.2185 1.0930 0.195*
H14C 1.3448 0.2570 1.0240 0.195*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.1320 (7) 0.0746 (4) 0.0756 (4) 0.0014 (4) 0.0239 (4) −0.0144 (3)
S1 0.0529 (3) 0.0606 (3) 0.0842 (4) 0.0008 (2) 0.0124 (3) −0.0096 (3)
N1 0.0371 (8) 0.0555 (10) 0.0668 (10) 0.0018 (7) 0.0068 (7) 0.0014 (8)
N2 0.0405 (8) 0.0511 (9) 0.0604 (9) −0.0010 (7) 0.0024 (7) 0.0085 (7)
N3 0.0512 (9) 0.0583 (10) 0.0671 (11) −0.0053 (8) −0.0031 (8) 0.0042 (8)
C1 0.0496 (10) 0.0545 (11) 0.0571 (11) 0.0090 (8) 0.0055 (8) 0.0064 (9)
C2 0.0614 (12) 0.0627 (13) 0.0556 (11) 0.0045 (10) 0.0034 (9) 0.0072 (10)
C3 0.0819 (15) 0.0540 (12) 0.0523 (11) 0.0005 (10) 0.0207 (10) 0.0066 (9)
C4 0.0682 (14) 0.0641 (14) 0.0796 (15) 0.0138 (11) 0.0292 (12) 0.0028 (11)
C5 0.0460 (10) 0.0638 (13) 0.0753 (14) 0.0076 (9) 0.0149 (10) 0.0042 (11)
C6 0.0441 (9) 0.0481 (10) 0.0503 (10) 0.0030 (7) 0.0122 (7) 0.0138 (8)
C7 0.0386 (9) 0.0475 (10) 0.0541 (10) 0.0027 (7) 0.0088 (7) 0.0129 (8)
C8 0.0392 (9) 0.0492 (10) 0.0637 (11) −0.0002 (8) 0.0103 (8) 0.0074 (9)
C9 0.0599 (11) 0.0516 (11) 0.0594 (12) −0.0095 (9) 0.0055 (9) 0.0108 (9)
C10 0.0398 (9) 0.0570 (11) 0.0650 (12) 0.0078 (8) 0.0069 (8) 0.0076 (9)
C11 0.0872 (17) 0.0662 (14) 0.0625 (13) −0.0168 (12) 0.0068 (12) 0.0047 (11)
C12 0.0844 (17) 0.0661 (15) 0.0928 (18) −0.0077 (13) 0.0157 (14) −0.0147 (13)
C13 0.193 (4) 0.103 (3) 0.133 (3) −0.032 (3) 0.066 (3) −0.052 (2)
C14 0.208 (4) 0.088 (2) 0.104 (2) −0.059 (2) 0.055 (3) −0.0064 (18)

Geometric parameters (Å, °)

Cl1—C3 1.744 (2) C5—H5A 0.9300
S1—C8 1.727 (2) C6—C7 1.468 (3)
S1—C9 1.757 (2) C7—C10 1.363 (3)
N1—C8 1.311 (3) C9—C11 1.492 (3)
N1—C7 1.395 (2) C10—H10A 0.9300
N2—C8 1.356 (2) C11—C12 1.508 (3)
N2—C10 1.367 (3) C11—H11A 0.9700
N2—N3 1.372 (2) C11—H11B 0.9700
N3—C9 1.284 (3) C12—C14 1.503 (4)
C1—C2 1.381 (3) C12—C13 1.525 (4)
C1—C6 1.387 (3) C12—H12A 0.9800
C1—H1A 0.9300 C13—H13A 0.9600
C2—C3 1.373 (3) C13—H13B 0.9600
C2—H2A 0.9300 C13—H13C 0.9600
C3—C4 1.376 (3) C14—H14A 0.9600
C4—C5 1.379 (3) C14—H14B 0.9600
C4—H4A 0.9300 C14—H14C 0.9600
C5—C6 1.397 (3)
C8—S1—C9 88.02 (10) N3—C9—C11 123.3 (2)
C8—N1—C7 103.40 (15) N3—C9—S1 116.48 (16)
C8—N2—C10 107.48 (16) C11—C9—S1 120.14 (18)
C8—N2—N3 118.26 (17) C7—C10—N2 104.82 (16)
C10—N2—N3 134.26 (16) C7—C10—H10A 127.6
C9—N3—N2 108.46 (16) N2—C10—H10A 127.6
C2—C1—C6 121.66 (19) C9—C11—C12 115.8 (2)
C2—C1—H1A 119.2 C9—C11—H11A 108.3
C6—C1—H1A 119.2 C12—C11—H11A 108.3
C3—C2—C1 118.9 (2) C9—C11—H11B 108.3
C3—C2—H2A 120.6 C12—C11—H11B 108.3
C1—C2—H2A 120.6 H11A—C11—H11B 107.4
C2—C3—C4 121.2 (2) C14—C12—C11 110.9 (3)
C2—C3—Cl1 118.99 (18) C14—C12—C13 111.3 (3)
C4—C3—Cl1 119.80 (18) C11—C12—C13 110.0 (3)
C3—C4—C5 119.5 (2) C14—C12—H12A 108.2
C3—C4—H4A 120.2 C11—C12—H12A 108.2
C5—C4—H4A 120.2 C13—C12—H12A 108.2
C4—C5—C6 120.8 (2) C12—C13—H13A 109.5
C4—C5—H5A 119.6 C12—C13—H13B 109.5
C6—C5—H5A 119.6 H13A—C13—H13B 109.5
C1—C6—C5 117.93 (19) C12—C13—H13C 109.5
C1—C6—C7 119.84 (17) H13A—C13—H13C 109.5
C5—C6—C7 122.23 (17) H13B—C13—H13C 109.5
C10—C7—N1 111.42 (17) C12—C14—H14A 109.5
C10—C7—C6 128.53 (17) C12—C14—H14B 109.5
N1—C7—C6 120.03 (15) H14A—C14—H14B 109.5
N1—C8—N2 112.88 (17) C12—C14—H14C 109.5
N1—C8—S1 138.34 (15) H14A—C14—H14C 109.5
N2—C8—S1 108.78 (14) H14B—C14—H14C 109.5
C8—N2—N3—C9 −0.8 (2) C7—N1—C8—S1 179.56 (18)
C10—N2—N3—C9 179.7 (2) C10—N2—C8—N1 0.2 (2)
C6—C1—C2—C3 1.3 (3) N3—N2—C8—N1 −179.44 (16)
C1—C2—C3—C4 −0.7 (3) C10—N2—C8—S1 −179.60 (13)
C1—C2—C3—Cl1 179.91 (16) N3—N2—C8—S1 0.8 (2)
C2—C3—C4—C5 0.2 (3) C9—S1—C8—N1 179.9 (2)
Cl1—C3—C4—C5 179.57 (17) C9—S1—C8—N2 −0.42 (14)
C3—C4—C5—C6 −0.3 (3) N2—N3—C9—C11 178.09 (18)
C2—C1—C6—C5 −1.4 (3) N2—N3—C9—S1 0.4 (2)
C2—C1—C6—C7 178.29 (18) C8—S1—C9—N3 −0.01 (17)
C4—C5—C6—C1 0.9 (3) C8—S1—C9—C11 −177.76 (18)
C4—C5—C6—C7 −178.82 (19) N1—C7—C10—N2 0.1 (2)
C8—N1—C7—C10 0.0 (2) C6—C7—C10—N2 178.64 (17)
C8—N1—C7—C6 −178.69 (16) C8—N2—C10—C7 −0.1 (2)
C1—C6—C7—C10 −174.21 (19) N3—N2—C10—C7 179.36 (19)
C5—C6—C7—C10 5.5 (3) N3—C9—C11—C12 122.0 (3)
C1—C6—C7—N1 4.2 (3) S1—C9—C11—C12 −60.4 (3)
C5—C6—C7—N1 −176.07 (17) C9—C11—C12—C14 −66.3 (3)
C7—N1—C8—N2 −0.1 (2) C9—C11—C12—C13 170.2 (3)

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C1–C6 ring.
D—H···A D—H H···A D···A D—H···A
C11—H11B···Cg3i 0.97 2.70 3.544 (2) 145

Symmetry codes: (i) −x+2, −y, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: NG5089).

References

  1. Andotra, C. S., Langer, T. & Kotha, A. (1997). J. Indian Chem. Soc. 74, 125–127.
  2. Andreani, A., Bonazzi, D., Rambaldi, M., Fabbri, G. & Rainsford, K. D. (1982). Eur. J. Med. Chem. 17, 271–274.
  3. Andreani, A., Rambaldi, M., Locatelli, A. & Andreani, F. (1991). Collect. Czech. Chem. Commun. 56, 2436–2447.
  4. Andreani, A., Rambaldi, M., Mascellani, G. & Rugarli, P. (1987). Eur. J. Med. Chem. 22, 19–22.
  5. Bruker (2009). APEX2, SAINT and SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  6. Eberle, M. K. & Robert, E. M. (1977). US Patent No. 4 054 665.
  7. Gadad, A. K., Mahajanshetti, C. S., Nimbalkar, S. & Raichurkar, A. (2000). Eur. J. Med. Chem. 35, 853–857. [DOI] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810052621/ng5089sup1.cif

e-67-0o207-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052621/ng5089Isup2.hkl

e-67-0o207-Isup2.hkl (164.5KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

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