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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Dec 24;67(Pt 1):m113. doi: 10.1107/S1600536810052992

Hexaaqua­magnesium dibromide 5-(pyridinium-3-yl)tetra­zol-1-ide

Jing Dai a,*, Xin-Yuan Chen a
PMCID: PMC3050346  PMID: 21522526

Abstract

In the title compound, [Mg(H2O)6]Br2·2C6H5N5, the MgII atom, lying on an inversion center, is coordinated by six water mol­ecules in a distorted octa­hedral geometry. The pyridine and tetra­zole rings in the 5-(pyridinium-3-yl)tetra­zol-1-ide zwitterion are nearly coplanar, twisted from each other by a dihedral angle of 5.70 (1)°. The zwitterions, Br anions and complex cations are connected by O—H⋯Br, O—H⋯N and N—H⋯Br hydrogen bonds, leading to the formation of a three-dimensional network.

Related literature

For tetra­zole derivatives, see: Fu et al. (2008 ▶); Zhao et al. (2008 ▶). For the crystal structures and properties of related compounds, see: Fu et al. (2007 ▶, 2009 ▶); Fu & Xiong (2008 ▶).graphic file with name e-67-0m113-scheme1.jpg

Experimental

Crystal data

  • [Mg(H2O)6]Br2·2C6H5N5

  • M r = 586.53

  • Triclinic, Inline graphic

  • a = 7.3439 (15) Å

  • b = 8.7786 (18) Å

  • c = 9.5863 (19) Å

  • α = 94.04 (3)°

  • β = 90.94 (3)°

  • γ = 111.75 (3)°

  • V = 572.0 (2) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 3.62 mm−1

  • T = 298 K

  • 0.40 × 0.05 × 0.05 mm

Data collection

  • Rigaku SCXmini CCD diffractometer

  • Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.89, T max = 0.95

  • 5933 measured reflections

  • 2627 independent reflections

  • 2172 reflections with I > 2σ(I)

  • R int = 0.040

Refinement

  • R[F 2 > 2σ(F 2)] = 0.040

  • wR(F 2) = 0.097

  • S = 1.09

  • 2627 reflections

  • 142 parameters

  • H-atom parameters constrained

  • Δρmax = 0.32 e Å−3

  • Δρmin = −0.52 e Å−3

Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810052992/hy2389sup1.cif

e-67-0m113-sup1.cif (14.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052992/hy2389Isup2.hkl

e-67-0m113-Isup2.hkl (129KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
N1—H1A⋯Br1i 0.86 2.41 3.240 (3) 161
O1W—H1WA⋯N5 0.81 1.98 2.780 (3) 171
O1W—H1WB⋯Br1ii 0.89 2.66 3.382 (3) 138
O2W—H2WA⋯N4 0.86 1.89 2.738 (3) 167
O2W—H2WB⋯Br1iii 0.76 2.53 3.296 (2) 178
O3W—H3WA⋯Br1iv 0.91 2.48 3.328 (2) 156
O3W—H3WB⋯N2v 0.96 1.78 2.730 (3) 174

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

Acknowledgments

This work was supported by a start-up grant from Southeast University.

supplementary crystallographic information

Comment

Tetrazole compounds have attracted more attention as phase transition dielectric materials for its applications in micro-electronics, memory storage. With the purpose of obtaining phase transition crystals of 3-(1H-tetrazol-5-yl)pyridine compounds, its interaction with various metal ions has been studied and a series of new materials have been elaborated with this organic molecule (Fu et al., 2007, 2008; Fu & Xiong 2008; Zhao et al., 2008). In this paper, we describe the crystal structure of the title compound.

The asymmetric unit of the title compound (Fig. 1) is composed of one zwitterionic organic molecule, half [Mg(H2O)6]2+ cation and one Br anion. In the zwitterionic organic molecule, the pyridine N atom is protonated. The pyridine and tetrazole rings are nearly coplanar and only twisted from each other by a dihedral angle of 5.70 (1)°. The geometric parameters of the tetrazole ring are comparable to those in related molecules (Fu et al., 2009; Zhao et al., 2008).

In the crystal structure, the intermolecular hydrogen bonds are formed by all H atoms of the water molecules and pyridine N atoms with the tetrazole N atoms or Br anions. The complex cations [Mg(H2O)6]2+ and Br anions are linked in the crystal through O—H···Br hydrogen bonds into an infinite cation–anion sheet parallel to (0 0 1). The two-dimensional sheets are linked by organic molecules through O—H···N and N—H···Br hydrogen bonds into a three-dimensional network (Table 1 and Fig. 2).

Experimental

MgBr2.6H2O (2 mmol) and 3-(1H-tetrazol-5-yl)pyridine (0.528 g, 2 mmol) were dissolved in 70% methanol aqueous solution, and then 2 ml HBr was added. Single crystals suitable for X-ray diffraction analysis were obtained by slow evaporation of the solution at room temperature after two weeks. The crystals were colourless, block, and of average size 0.2×0.3×0.4 mm.

The permittivity measurement shows that there is no phase transition within temperature range from 100 to 400 K, and the permittivity is 9.1 at 1 MHz at room temperature.

Refinement

H atoms attached to C and N atoms were positioned geometrically and treated as riding, with C—H = 0.93 and N—H = 0.86 Å and with Uiso(H) = 1.2Ueq(C, N). H atoms of water molecules were located in a difference Fourier map and refined using a riding model, with Uiso(H) = 1.5Ueq(O).

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound. Displacement ellipsoids are drawn at the 30% probability level. [Symmetry code: (A) 1 - x, 1 - y, 2 - z.]

Fig. 2.

Fig. 2.

The crystal packing of the title compound. H atoms not involved in hydrogen bonds (dashed lines) have been omitted for clarity.

Crystal data

[Mg(H2O)6]Br2·2C6H5N5 Z = 1
Mr = 586.53 F(000) = 294
Triclinic, P1 Dx = 1.703 Mg m−3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.3439 (15) Å Cell parameters from 2627 reflections
b = 8.7786 (18) Å θ = 3.1–24.5°
c = 9.5863 (19) Å µ = 3.62 mm−1
α = 94.04 (3)° T = 298 K
β = 90.94 (3)° Block, colourless
γ = 111.75 (3)° 0.40 × 0.05 × 0.05 mm
V = 572.0 (2) Å3

Data collection

Rigaku SCXmini CCD diffractometer 2627 independent reflections
Radiation source: fine-focus sealed tube 2172 reflections with I > 2σ(I)
graphite Rint = 0.040
Detector resolution: 13.6612 pixels mm-1 θmax = 27.5°, θmin = 3.1°
ω scans h = −9→9
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) k = −11→11
Tmin = 0.89, Tmax = 0.95 l = −12→12
5933 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097 H-atom parameters constrained
S = 1.09 w = 1/[σ2(Fo2) + (0.0426P)2 + 0.1011P] where P = (Fo2 + 2Fc2)/3
2627 reflections (Δ/σ)max = 0.001
142 parameters Δρmax = 0.32 e Å−3
0 restraints Δρmin = −0.52 e Å−3

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N4 0.3716 (3) 0.6009 (3) 0.6076 (3) 0.0347 (6)
N2 0.2637 (3) 0.5318 (3) 0.3932 (2) 0.0315 (5)
C6 0.1639 (4) 0.4135 (3) 0.4740 (3) 0.0263 (6)
N5 0.2266 (3) 0.4528 (3) 0.6073 (2) 0.0328 (5)
C2 0.0038 (4) 0.2612 (3) 0.4229 (3) 0.0272 (6)
C3 −0.1073 (4) 0.1506 (4) 0.5142 (3) 0.0319 (6)
H3 −0.0792 0.1730 0.6101 0.038*
N1 −0.1923 (4) 0.0847 (4) 0.2374 (3) 0.0481 (7)
H1A −0.2202 0.0642 0.1489 0.058*
N3 0.3947 (3) 0.6479 (3) 0.4800 (3) 0.0360 (6)
C1 −0.0427 (5) 0.2234 (4) 0.2822 (3) 0.0398 (7)
H1 0.0296 0.2941 0.2180 0.048*
C5 −0.3000 (5) −0.0234 (4) 0.3232 (4) 0.0464 (8)
H5 −0.4017 −0.1188 0.2873 0.056*
C4 −0.2598 (4) 0.0073 (4) 0.4639 (4) 0.0408 (7)
H4 −0.3335 −0.0668 0.5253 0.049*
Mg1 0.5000 0.5000 1.0000 0.0303 (3)
O1W 0.2634 (3) 0.3471 (3) 0.8692 (2) 0.0497 (6)
H1WA 0.2453 0.3674 0.7906 0.075*
H1WB 0.1806 0.2467 0.8849 0.075*
O2W 0.5507 (3) 0.6851 (2) 0.8697 (2) 0.0465 (6)
H2WA 0.5117 0.6602 0.7829 0.070*
H2WB 0.6098 0.7777 0.8780 0.070*
O3W 0.3123 (4) 0.5786 (3) 1.1155 (2) 0.0532 (6)
H3WA 0.2760 0.6585 1.0834 0.080*
H3WB 0.3030 0.5606 1.2130 0.080*
Br1 0.79518 (5) 0.08632 (4) 0.89951 (3) 0.04481 (14)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N4 0.0315 (12) 0.0309 (13) 0.0353 (14) 0.0055 (11) −0.0054 (10) −0.0025 (11)
N2 0.0307 (12) 0.0285 (12) 0.0293 (13) 0.0041 (10) 0.0010 (10) 0.0027 (10)
C6 0.0242 (13) 0.0277 (14) 0.0257 (14) 0.0080 (11) 0.0012 (10) 0.0028 (11)
N5 0.0325 (12) 0.0336 (13) 0.0262 (13) 0.0053 (11) −0.0038 (10) 0.0027 (10)
C2 0.0270 (13) 0.0270 (14) 0.0269 (14) 0.0097 (11) 0.0010 (11) 0.0009 (11)
C3 0.0309 (14) 0.0311 (15) 0.0313 (15) 0.0083 (12) 0.0010 (11) 0.0051 (12)
N1 0.0513 (16) 0.0464 (17) 0.0333 (15) 0.0059 (14) −0.0096 (12) −0.0124 (13)
N3 0.0332 (13) 0.0292 (13) 0.0411 (15) 0.0063 (11) 0.0026 (11) 0.0039 (11)
C1 0.0410 (16) 0.0376 (17) 0.0297 (16) 0.0025 (14) 0.0027 (13) −0.0010 (13)
C5 0.0369 (17) 0.0301 (17) 0.061 (2) 0.0016 (14) −0.0041 (16) −0.0084 (16)
C4 0.0344 (16) 0.0307 (16) 0.052 (2) 0.0049 (13) 0.0049 (14) 0.0061 (15)
Mg1 0.0387 (7) 0.0245 (7) 0.0216 (7) 0.0047 (6) 0.0004 (5) 0.0022 (5)
O1W 0.0520 (13) 0.0454 (14) 0.0302 (12) −0.0069 (11) −0.0088 (10) 0.0073 (10)
O2W 0.0710 (15) 0.0213 (10) 0.0310 (12) −0.0015 (10) −0.0103 (10) 0.0041 (9)
O3W 0.0792 (17) 0.0629 (17) 0.0342 (13) 0.0432 (15) 0.0173 (12) 0.0161 (12)
Br1 0.0546 (2) 0.03047 (19) 0.0402 (2) 0.00473 (15) 0.00206 (14) 0.00592 (14)

Geometric parameters (Å, °)

N4—N3 1.312 (4) C5—H5 0.9300
N4—N5 1.341 (3) C4—H4 0.9300
N2—N3 1.336 (3) Mg1—O2Wi 2.048 (2)
N2—C6 1.336 (3) Mg1—O2W 2.048 (2)
C6—N5 1.329 (3) Mg1—O3Wi 2.061 (2)
C6—C2 1.460 (4) Mg1—O3W 2.061 (2)
C2—C1 1.373 (4) Mg1—O1W 2.087 (2)
C2—C3 1.390 (4) Mg1—O1Wi 2.087 (2)
C3—C4 1.386 (4) O1W—H1WA 0.8068
C3—H3 0.9300 O1W—H1WB 0.8907
N1—C5 1.333 (4) O2W—H2WA 0.8615
N1—C1 1.339 (4) O2W—H2WB 0.7636
N1—H1A 0.8600 O3W—H3WA 0.9085
C1—H1 0.9300 O3W—H3WB 0.9576
C5—C4 1.363 (5)
N3—N4—N5 110.0 (2) O2Wi—Mg1—O2W 180.000 (1)
N3—N2—C6 105.2 (2) O2Wi—Mg1—O3Wi 91.93 (10)
N5—C6—N2 111.4 (2) O2W—Mg1—O3Wi 88.07 (10)
N5—C6—C2 124.2 (2) O2Wi—Mg1—O3W 88.07 (10)
N2—C6—C2 124.4 (2) O2W—Mg1—O3W 91.93 (10)
C6—N5—N4 104.5 (2) O3Wi—Mg1—O3W 180.000 (1)
C1—C2—C3 117.8 (3) O2Wi—Mg1—O1W 89.55 (9)
C1—C2—C6 120.7 (3) O2W—Mg1—O1W 90.45 (9)
C3—C2—C6 121.5 (3) O3Wi—Mg1—O1W 90.10 (11)
C4—C3—C2 120.7 (3) O3W—Mg1—O1W 89.90 (11)
C4—C3—H3 119.6 O2Wi—Mg1—O1Wi 90.45 (9)
C2—C3—H3 119.6 O2W—Mg1—O1Wi 89.55 (9)
C5—N1—C1 123.3 (3) O3Wi—Mg1—O1Wi 89.90 (11)
C5—N1—H1A 118.3 O3W—Mg1—O1Wi 90.10 (11)
C1—N1—H1A 118.3 O1W—Mg1—O1Wi 180.000 (1)
N4—N3—N2 108.8 (2) Mg1—O1W—H1WA 122.5
N1—C1—C2 119.9 (3) Mg1—O1W—H1WB 126.6
N1—C1—H1 120.1 H1WA—O1W—H1WB 110.2
C2—C1—H1 120.1 Mg1—O2W—H2WA 119.0
N1—C5—C4 119.4 (3) Mg1—O2W—H2WB 133.7
N1—C5—H5 120.3 H2WA—O2W—H2WB 107.0
C4—C5—H5 120.3 Mg1—O3W—H3WA 118.6
C5—C4—C3 119.0 (3) Mg1—O3W—H3WB 118.7
C5—C4—H4 120.5 H3WA—O3W—H3WB 119.2
C3—C4—H4 120.5

Symmetry codes: (i) −x+1, −y+1, −z+2.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1A···Br1ii 0.86 2.41 3.240 (3) 161
O1W—H1WA···N5 0.81 1.98 2.780 (3) 171
O1W—H1WB···Br1iii 0.89 2.66 3.382 (3) 138
O2W—H2WA···N4 0.86 1.89 2.738 (3) 167
O2W—H2WB···Br1iv 0.76 2.53 3.296 (2) 178
O3W—H3WA···Br1i 0.91 2.48 3.328 (2) 156
O3W—H3WB···N2v 0.96 1.78 2.730 (3) 174

Symmetry codes: (ii) x−1, y, z−1; (iii) x−1, y, z; (iv) x, y+1, z; (i) −x+1, −y+1, −z+2; (v) x, y, z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HY2389).

References

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  2. Fu, D.-W., Ge, J.-Z., Dai, J., Ye, H.-Y. & Qu, Z.-R. (2009). Inorg. Chem. Commun. 12, 994–997.
  3. Fu, D.-W., Song, Y.-M., Wang, G.-X., Ye, Q., Xiong, R.-G., Akutagawa, T., Nakamura, T., Chan, P. W. H. & Huang, S. D. (2007). J. Am. Chem. Soc. 129, 5346–5347. [DOI] [PubMed]
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  5. Fu, D.-W., Zhang, W. & Xiong, R.-G. (2008). Cryst. Growth Des. 8, 3461–3464.
  6. Rigaku (2005). CrystalClear Rigaku Corporation, Tokyo, Japan.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810052992/hy2389sup1.cif

e-67-0m113-sup1.cif (14.5KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052992/hy2389Isup2.hkl

e-67-0m113-Isup2.hkl (129KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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