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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Dec 11;67(Pt 1):o67. doi: 10.1107/S1600536810050361

(S)-N-Benzyl-2-methyl-1,2,3,4-tetra­hydro­isoquinoline-3-carboxamide

Tricia Naicker a, Thavendran Govender a, Hendrik G Kruger b, Glenn EM Maguire b,*
PMCID: PMC3050362  PMID: 21522778

Abstract

The structure of the title compound, C18H20N2O, at 173 K has hexa­gonal (P61) symmetry. The N-containing six-membered ring assumes a half-chair conformation. In the crystal, inter­molecular N—H⋯O hydrogen bonding via the amide groups cross-link the mol­ecules along the a axis. The absolute configuration was confirmed by 2D NMR studies.

Related literature

The title compound is a precursor to chiral ligands involving a tetra­hydro­isoquinoline backbone. For the application of these ligands as catalysts, see: Chakka et al. (2009); Peters et al. (2010); Naicker et al. (2010a ). For related structures, see: Chakka et al. (2010). For a related structure with the same chiral centre and conformation of the six-membered ring, see: Naicker et al. (2010b ).graphic file with name e-67-00o67-scheme1.jpg

Experimental

Crystal data

  • C18H20N2O

  • M r = 280.36

  • Hexagonal, Inline graphic

  • a = 10.1838 (13) Å

  • c = 25.965 (3) Å

  • V = 2332.1 (5) Å3

  • Z = 6

  • Mo Kα radiation

  • μ = 0.08 mm−1

  • T = 173 K

  • 0.22 × 0.12 × 0.03 mm

Data collection

  • Bruker Kappa DUO APEXII diffractometer

  • 18777 measured reflections

  • 1759 independent reflections

  • 1358 reflections with I > 2σ(I)

  • R int = 0.059

Refinement

  • R[F 2 > 2σ(F 2)] = 0.036

  • wR(F 2) = 0.088

  • S = 1.05

  • 1759 reflections

  • 195 parameters

  • 2 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.14 e Å−3

  • Δρmin = −0.14 e Å−3

Data collection: APEX2 (Bruker, 2006); cell refinement: SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050361/hg2752sup1.cif

e-67-00o67-sup1.cif (19.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050361/hg2752Isup2.hkl

e-67-00o67-Isup2.hkl (86.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2⋯O1i 0.96 (2) 1.92 (2) 2.852 (3) 165 (3)

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors wish to thank Dr Hong Su of the Chemistry Department of the University of Cape Town for her assistance with the crystallographic data collection.

supplementary crystallographic information

Comment

The title compound (Fig. 1) is a precursor in the synthesis of novel chiral ligands involving a tetrahydroisoquinoline backbone. Recently, we have reported the application of these ligands as useful catalysts for transfer hydrogenation of prochiral ketones (Chakka et al., 2009), Henry reactions, hydrogenation of olefins (Peters et al. 2010) and Diels-Alder reactions (Naicker et al., 2010a).

Compound 1 was derived from commercially available S-phenyl glycine and formaldehyde. The absolute stereochemistry was confirmed to be S at the C9 position from proton NMR spectroscopy. (Peters et al. 2010).

From the crystal structure it is evident that the N-containing six membered ring assumes a half chair conformation (Fig. 1), in which the 1—N1—C9—C8 bond has a torsion angle of 68.7 (3)°. This observation is similar to analogous structures that we have reported recently (Chakka et al., 2010) and (Naicker et al., 2010b).

The molecule exhibits intermolecular hydrogen bonding, which involves the atom O1 which links the molecules together see Table 1 and Fig. 2.

Experimental

(S)-2-methyl-1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid (1.5 g, 7.8 mmol) was dissolved in DMF (15 ml) followed by addition of 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC) hydrochloride (8.8 mmol), hydroxybenzotriazole (0.81 g, 8.3 mmol), a catalytic amount of 4-dimethylaminopyridine and benzyl amine (8.3 mmol). The reaction mixture was then stirred at room temperature until no more starting material could be detected by TLC analysis (approximately 1 h). The reaction mixture was poured into 30 volumes of chilled water; the mixture was then extracted twice with ethyl acetate. The extracts were combined, washed with 5% HCl (aq) to remove latent EDC urea, dried over anhydrous magnesium sulfate and then concentrated to dryness affording the crude product which was purified by column chromatography.

Melting point 91–95 oC. [α]20D -7.93 (c 0.21 in CHCl3).

IR (neat) nmax: 3281, 2923, 1646, 1548, 1454, 1240, 739, 696 cm-1.

1H NMR (400 MHz, CDCl3) δ = 2.78 (d, 3H), 3.12 (m, 2), 3.52 (t, 1H), 3.66 (m, 3H), 3.78 (d, 1H), 6.99 (d, 1H), 7.19 (m, 3H), 7.30 (m, 6H)

Recrystallization from EtOAc afforded colourless crystals suitable for X-ray analysis.

Refinement

All hydrogen atoms on carbons were positioned geometrically with C—H distances ranging from 0.95 Å to 1.00 Å and refined as riding on their parent atoms, with Uiso (H) = 1.2 - 1.5 Ueq (C). The position of amine hydrogen H2 was located in the difference electron density maps and refined with simple bond length constraints. The Flack x parameter is -0.5 (15) without merging Friedel pairs, so Friedel pairs were merged at the final refinement.

Figures

Fig. 1.

Fig. 1.

The molecular structure of compound 1 with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Hydrogen atoms have been omitted for clarity.

Fig. 2.

Fig. 2.

Hydrogen bonding interactions between atoms N2—H2···O1.

Crystal data

C18H20N2O Dx = 1.198 Mg m3
Mr = 280.36 Melting point: 365 K
Hexagonal, P61 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 61 Cell parameters from 18777 reflections
a = 10.1838 (13) Å θ = 2.3–27.2°
c = 25.965 (3) Å µ = 0.08 mm1
V = 2332.1 (5) Å3 T = 173 K
Z = 6 Needle, colourless
F(000) = 900 0.22 × 0.12 × 0.03 mm

Data collection

Bruker Kappa DUO APEXII diffractometer 1358 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.059
graphite θmax = 27.2°, θmin = 2.3°
0.5° φ scans and ω scans h = −13→12
18777 measured reflections k = −12→13
1759 independent reflections l = −33→33

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.088 w = 1/[σ2(Fo2) + (0.0377P)2 + 0.3273P] where P = (Fo2 + 2Fc2)/3
S = 1.05 (Δ/σ)max < 0.001
1759 reflections Δρmax = 0.14 e Å3
195 parameters Δρmin = −0.14 e Å3
2 restraints Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methods Extinction coefficient: 0.0033 (7)

Special details

Experimental. Half sphere of data collected using SAINT strategy (Bruker, 2006). Crystal to detector distance = 40 mm; combination of φ and ω scans of 0.5°, 30 s per °, 2 iterations.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.73695 (19) 0.77313 (19) 0.97396 (7) 0.0450 (5)
N1 0.9118 (2) 1.1026 (2) 0.98992 (8) 0.0385 (5)
N2 0.7085 (2) 0.8382 (2) 0.89310 (8) 0.0362 (5)
H2 0.747 (3) 0.915 (2) 0.8671 (9) 0.051 (8)*
C1 1.0391 (3) 1.2586 (3) 0.98885 (11) 0.0465 (7)
H1A 1.0402 1.3099 1.0214 0.056*
H1B 1.0241 1.3139 0.9602 0.056*
C2 1.1898 (3) 1.2671 (3) 0.98225 (10) 0.0406 (6)
C3 1.3244 (4) 1.4003 (3) 0.99539 (12) 0.0537 (8)
H3 1.3197 1.4848 1.0087 0.064*
C4 1.4632 (3) 1.4096 (3) 0.98919 (13) 0.0595 (8)
H4 1.5535 1.4999 0.9984 0.071*
C5 1.4714 (3) 1.2876 (4) 0.96964 (13) 0.0581 (8)
H5 1.5671 1.2941 0.9652 0.070*
C6 1.3402 (3) 1.1566 (3) 0.95657 (11) 0.0463 (7)
H6 1.3461 1.0725 0.9436 0.056*
C7 1.1987 (3) 1.1457 (3) 0.96216 (10) 0.0374 (6)
C8 1.0561 (3) 1.0021 (3) 0.94725 (11) 0.0378 (6)
H8A 1.0356 0.9225 0.9730 0.045*
H8B 1.0718 0.9668 0.9135 0.045*
C9 0.9188 (3) 1.0240 (3) 0.94379 (10) 0.0345 (5)
H9 0.9283 1.0859 0.9126 0.041*
C10 0.7785 (3) 0.8671 (3) 0.93857 (10) 0.0343 (5)
C11 0.5866 (3) 0.6863 (3) 0.87851 (10) 0.0393 (6)
H11A 0.5110 0.6958 0.8573 0.047*
H11B 0.5349 0.6288 0.9100 0.047*
C12 0.6459 (3) 0.6001 (3) 0.84871 (9) 0.0373 (6)
C13 0.7331 (4) 0.5489 (4) 0.87268 (12) 0.0623 (9)
H13 0.7528 0.5655 0.9085 0.075*
C14 0.7920 (4) 0.4739 (4) 0.84516 (14) 0.0685 (10)
H14 0.8523 0.4402 0.8622 0.082*
C15 0.7643 (4) 0.4478 (4) 0.79358 (13) 0.0615 (9)
H15 0.8053 0.3967 0.7747 0.074*
C16 0.6769 (4) 0.4962 (4) 0.76946 (13) 0.0680 (10)
H16 0.6565 0.4782 0.7337 0.082*
C17 0.6180 (4) 0.5713 (3) 0.79703 (12) 0.0529 (7)
H17 0.5568 0.6037 0.7798 0.063*
C18 0.7705 (3) 1.1059 (4) 0.99296 (14) 0.0573 (8)
H18A 0.6846 1.0019 0.9935 0.086*
H18B 0.7619 1.1594 0.9629 0.086*
H18C 0.7700 1.1586 1.0245 0.086*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0379 (9) 0.0402 (10) 0.0409 (10) 0.0076 (8) −0.0062 (8) 0.0136 (8)
N1 0.0387 (12) 0.0377 (11) 0.0414 (12) 0.0208 (10) 0.0035 (9) 0.0012 (9)
N2 0.0370 (11) 0.0366 (11) 0.0349 (11) 0.0183 (9) −0.0024 (9) 0.0071 (9)
C1 0.0571 (16) 0.0354 (14) 0.0488 (16) 0.0245 (13) −0.0015 (13) −0.0017 (12)
C2 0.0453 (14) 0.0287 (12) 0.0408 (14) 0.0133 (11) −0.0010 (12) 0.0058 (11)
C3 0.065 (2) 0.0303 (14) 0.0522 (18) 0.0137 (14) −0.0029 (14) 0.0044 (12)
C4 0.0422 (16) 0.0433 (16) 0.065 (2) 0.0006 (13) −0.0056 (15) 0.0107 (15)
C5 0.0371 (15) 0.0565 (18) 0.067 (2) 0.0128 (14) −0.0042 (14) 0.0108 (16)
C6 0.0365 (14) 0.0439 (15) 0.0532 (17) 0.0162 (12) 0.0031 (12) 0.0094 (13)
C7 0.0381 (13) 0.0290 (12) 0.0388 (13) 0.0121 (11) 0.0011 (11) 0.0073 (11)
C8 0.0336 (12) 0.0299 (12) 0.0459 (14) 0.0130 (11) 0.0036 (11) −0.0001 (11)
C9 0.0349 (13) 0.0321 (12) 0.0340 (12) 0.0149 (10) 0.0029 (10) 0.0071 (10)
C10 0.0315 (12) 0.0360 (13) 0.0356 (13) 0.0170 (10) 0.0005 (10) 0.0067 (10)
C11 0.0295 (13) 0.0442 (14) 0.0403 (14) 0.0156 (11) −0.0071 (11) 0.0036 (11)
C12 0.0300 (12) 0.0325 (13) 0.0375 (14) 0.0067 (10) 0.0004 (11) 0.0021 (11)
C13 0.073 (2) 0.097 (3) 0.0420 (17) 0.061 (2) −0.0073 (15) −0.0093 (16)
C14 0.069 (2) 0.089 (3) 0.067 (2) 0.054 (2) −0.0099 (18) −0.0217 (19)
C15 0.0525 (18) 0.0532 (18) 0.064 (2) 0.0151 (15) 0.0066 (16) −0.0209 (16)
C16 0.085 (3) 0.0545 (19) 0.0404 (16) 0.0168 (18) −0.0052 (17) −0.0131 (15)
C17 0.0631 (19) 0.0404 (15) 0.0440 (16) 0.0174 (14) −0.0140 (14) −0.0050 (13)
C18 0.0526 (17) 0.067 (2) 0.065 (2) 0.0395 (16) 0.0052 (15) −0.0012 (16)

Geometric parameters (Å, °)

O1—C10 1.239 (3) C8—H8A 0.9900
N1—C18 1.458 (3) C8—H8B 0.9900
N1—C9 1.462 (3) C9—C10 1.527 (3)
N1—C1 1.465 (3) C9—H9 1.0000
N2—C10 1.334 (3) C11—C12 1.504 (4)
N2—C11 1.469 (3) C11—H11A 0.9900
N2—H2 0.957 (10) C11—H11B 0.9900
C1—C2 1.503 (4) C12—C17 1.373 (4)
C1—H1A 0.9900 C12—C13 1.383 (4)
C1—H1B 0.9900 C13—C14 1.383 (4)
C2—C7 1.386 (4) C13—H13 0.9500
C2—C3 1.406 (4) C14—C15 1.367 (5)
C3—C4 1.378 (4) C14—H14 0.9500
C3—H3 0.9500 C15—C16 1.365 (5)
C4—C5 1.382 (5) C15—H15 0.9500
C4—H4 0.9500 C16—C17 1.385 (5)
C5—C6 1.377 (4) C16—H16 0.9500
C5—H5 0.9500 C17—H17 0.9500
C6—C7 1.396 (4) C18—H18A 0.9800
C6—H6 0.9500 C18—H18B 0.9800
C7—C8 1.508 (4) C18—H18C 0.9800
C8—C9 1.524 (3)
C18—N1—C9 112.1 (2) C8—C9—C10 107.39 (19)
C18—N1—C1 109.0 (2) N1—C9—H9 109.5
C9—N1—C1 108.61 (19) C8—C9—H9 109.5
C10—N2—C11 122.5 (2) C10—C9—H9 109.5
C10—N2—H2 119.4 (18) O1—C10—N2 123.2 (2)
C11—N2—H2 117.6 (18) O1—C10—C9 121.5 (2)
N1—C1—C2 112.9 (2) N2—C10—C9 115.3 (2)
N1—C1—H1A 109.0 N2—C11—C12 111.9 (2)
C2—C1—H1A 109.0 N2—C11—H11A 109.2
N1—C1—H1B 109.0 C12—C11—H11A 109.2
C2—C1—H1B 109.0 N2—C11—H11B 109.2
H1A—C1—H1B 107.8 C12—C11—H11B 109.2
C7—C2—C3 119.0 (3) H11A—C11—H11B 107.9
C7—C2—C1 120.8 (2) C17—C12—C13 117.6 (3)
C3—C2—C1 120.2 (3) C17—C12—C11 121.8 (3)
C4—C3—C2 120.6 (3) C13—C12—C11 120.6 (2)
C4—C3—H3 119.7 C12—C13—C14 120.9 (3)
C2—C3—H3 119.7 C12—C13—H13 119.5
C3—C4—C5 120.1 (3) C14—C13—H13 119.5
C3—C4—H4 119.9 C15—C14—C13 120.6 (3)
C5—C4—H4 119.9 C15—C14—H14 119.7
C6—C5—C4 119.7 (3) C13—C14—H14 119.7
C6—C5—H5 120.2 C16—C15—C14 119.2 (3)
C4—C5—H5 120.2 C16—C15—H15 120.4
C5—C6—C7 121.0 (3) C14—C15—H15 120.4
C5—C6—H6 119.5 C15—C16—C17 120.2 (3)
C7—C6—H6 119.5 C15—C16—H16 119.9
C2—C7—C6 119.6 (2) C17—C16—H16 119.9
C2—C7—C8 120.0 (2) C12—C17—C16 121.5 (3)
C6—C7—C8 120.4 (2) C12—C17—H17 119.3
C7—C8—C9 112.5 (2) C16—C17—H17 119.3
C7—C8—H8A 109.1 N1—C18—H18A 109.5
C9—C8—H8A 109.1 N1—C18—H18B 109.5
C7—C8—H8B 109.1 H18A—C18—H18B 109.5
C9—C8—H8B 109.1 N1—C18—H18C 109.5
H8A—C8—H8B 107.8 H18A—C18—H18C 109.5
N1—C9—C8 109.34 (19) H18B—C18—H18C 109.5
N1—C9—C10 111.7 (2)
C18—N1—C1—C2 −176.3 (2) C1—N1—C9—C10 −172.63 (19)
C9—N1—C1—C2 −53.9 (3) C7—C8—C9—N1 −48.2 (3)
N1—C1—C2—C7 20.3 (4) C7—C8—C9—C10 −169.6 (2)
N1—C1—C2—C3 −161.2 (2) C11—N2—C10—O1 −7.5 (4)
C7—C2—C3—C4 −1.0 (4) C11—N2—C10—C9 170.4 (2)
C1—C2—C3—C4 −179.6 (3) N1—C9—C10—O1 −53.7 (3)
C2—C3—C4—C5 0.4 (5) C8—C9—C10—O1 66.2 (3)
C3—C4—C5—C6 −0.2 (5) N1—C9—C10—N2 128.3 (2)
C4—C5—C6—C7 0.8 (4) C8—C9—C10—N2 −111.8 (2)
C3—C2—C7—C6 1.6 (4) C10—N2—C11—C12 −94.2 (3)
C1—C2—C7—C6 −179.9 (2) N2—C11—C12—C17 −109.0 (3)
C3—C2—C7—C8 −179.4 (2) N2—C11—C12—C13 70.0 (3)
C1—C2—C7—C8 −0.8 (4) C17—C12—C13—C14 1.2 (5)
C5—C6—C7—C2 −1.5 (4) C11—C12—C13—C14 −177.9 (3)
C5—C6—C7—C8 179.4 (3) C12—C13—C14—C15 −0.4 (6)
C2—C7—C8—C9 14.7 (3) C13—C14—C15—C16 −0.3 (5)
C6—C7—C8—C9 −166.2 (2) C14—C15—C16—C17 0.3 (5)
C18—N1—C9—C8 −170.9 (2) C13—C12—C17—C16 −1.1 (4)
C1—N1—C9—C8 68.7 (2) C11—C12—C17—C16 177.9 (3)
C18—N1—C9—C10 −52.2 (3) C15—C16—C17—C12 0.4 (5)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2···O1i 0.96 (2) 1.92 (2) 2.852 (3) 165 (3)

Symmetry codes: (i) y, −x+y+1, z−1/6.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG2752).

References

  1. Bruker (2006). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Chakka, S., Andersson, P. G., Govender, T., Kruger, H. G. & Maguire, G. E. M. (2009). Eur. J. Org. Chem. pp. 972–980.
  3. Chakka, S. K., Govender, T., Kruger, H. G. & Maguire, G. E. M. (2010). Acta Cryst. E66, o1818. [DOI] [PMC free article] [PubMed]
  4. Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.
  5. Naicker, T., Govender, T., Kruger, H. G. & Maguire, G. E. M. (2010b). Acta Cryst. E66, o638. [DOI] [PMC free article] [PubMed]
  6. Naicker, T., Petzold, K., Singh, T., Arvidsson, P. I., Kruger, H. G., Maguire, G. E. M. & Govender, T. (2010a). Tetrahedron Asymmetry In the press. doi: 10.1016/j.tetasy.2010.11.010.
  7. Peters, B. K., Chakka, S. K., Naicker, T., Maguire, G. E. M., Kruger, H. G., Andersson, P. G. & Govender, T. (2010). Tetrahedron Asymmetry, 21, 679–687.
  8. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050361/hg2752sup1.cif

e-67-00o67-sup1.cif (19.1KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050361/hg2752Isup2.hkl

e-67-00o67-Isup2.hkl (86.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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