Abstract
The structure of the title compound, C18H20N2O, at 173 K has hexagonal (P61) symmetry. The N-containing six-membered ring assumes a half-chair conformation. In the crystal, intermolecular N—H⋯O hydrogen bonding via the amide groups cross-link the molecules along the a axis. The absolute configuration was confirmed by 2D NMR studies.
Related literature
The title compound is a precursor to chiral ligands involving a tetrahydroisoquinoline backbone. For the application of these ligands as catalysts, see: Chakka et al. (2009 ▶); Peters et al. (2010 ▶); Naicker et al. (2010a
▶). For related structures, see: Chakka et al. (2010 ▶). For a related structure with the same chiral centre and conformation of the six-membered ring, see: Naicker et al. (2010b
▶).
Experimental
Crystal data
C18H20N2O
M r = 280.36
Hexagonal,
a = 10.1838 (13) Å
c = 25.965 (3) Å
V = 2332.1 (5) Å3
Z = 6
Mo Kα radiation
μ = 0.08 mm−1
T = 173 K
0.22 × 0.12 × 0.03 mm
Data collection
Bruker Kappa DUO APEXII diffractometer
18777 measured reflections
1759 independent reflections
1358 reflections with I > 2σ(I)
R int = 0.059
Refinement
R[F 2 > 2σ(F 2)] = 0.036
wR(F 2) = 0.088
S = 1.05
1759 reflections
195 parameters
2 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.14 e Å−3
Δρmin = −0.14 e Å−3
Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXL97.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050361/hg2752sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050361/hg2752Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2⋯O1i | 0.96 (2) | 1.92 (2) | 2.852 (3) | 165 (3) |
Symmetry code: (i)
.
Acknowledgments
The authors wish to thank Dr Hong Su of the Chemistry Department of the University of Cape Town for her assistance with the crystallographic data collection.
supplementary crystallographic information
Comment
The title compound (Fig. 1) is a precursor in the synthesis of novel chiral ligands involving a tetrahydroisoquinoline backbone. Recently, we have reported the application of these ligands as useful catalysts for transfer hydrogenation of prochiral ketones (Chakka et al., 2009), Henry reactions, hydrogenation of olefins (Peters et al. 2010) and Diels-Alder reactions (Naicker et al., 2010a).
Compound 1 was derived from commercially available S-phenyl glycine and formaldehyde. The absolute stereochemistry was confirmed to be S at the C9 position from proton NMR spectroscopy. (Peters et al. 2010).
From the crystal structure it is evident that the N-containing six membered ring assumes a half chair conformation (Fig. 1), in which the 1—N1—C9—C8 bond has a torsion angle of 68.7 (3)°. This observation is similar to analogous structures that we have reported recently (Chakka et al., 2010) and (Naicker et al., 2010b).
The molecule exhibits intermolecular hydrogen bonding, which involves the atom O1 which links the molecules together see Table 1 and Fig. 2.
Experimental
(S)-2-methyl-1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid (1.5 g, 7.8 mmol) was dissolved in DMF (15 ml) followed by addition of 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC) hydrochloride (8.8 mmol), hydroxybenzotriazole (0.81 g, 8.3 mmol), a catalytic amount of 4-dimethylaminopyridine and benzyl amine (8.3 mmol). The reaction mixture was then stirred at room temperature until no more starting material could be detected by TLC analysis (approximately 1 h). The reaction mixture was poured into 30 volumes of chilled water; the mixture was then extracted twice with ethyl acetate. The extracts were combined, washed with 5% HCl (aq) to remove latent EDC urea, dried over anhydrous magnesium sulfate and then concentrated to dryness affording the crude product which was purified by column chromatography.
Melting point 91–95 oC. [α]20D -7.93 (c 0.21 in CHCl3).
IR (neat) nmax: 3281, 2923, 1646, 1548, 1454, 1240, 739, 696 cm-1.
1H NMR (400 MHz, CDCl3) δ = 2.78 (d, 3H), 3.12 (m, 2), 3.52 (t, 1H), 3.66 (m, 3H), 3.78 (d, 1H), 6.99 (d, 1H), 7.19 (m, 3H), 7.30 (m, 6H)
Recrystallization from EtOAc afforded colourless crystals suitable for X-ray analysis.
Refinement
All hydrogen atoms on carbons were positioned geometrically with C—H distances ranging from 0.95 Å to 1.00 Å and refined as riding on their parent atoms, with Uiso (H) = 1.2 - 1.5 Ueq (C). The position of amine hydrogen H2 was located in the difference electron density maps and refined with simple bond length constraints. The Flack x parameter is -0.5 (15) without merging Friedel pairs, so Friedel pairs were merged at the final refinement.
Figures
Fig. 1.
The molecular structure of compound 1 with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Hydrogen atoms have been omitted for clarity.
Fig. 2.
Hydrogen bonding interactions between atoms N2—H2···O1.
Crystal data
| C18H20N2O | Dx = 1.198 Mg m−3 |
| Mr = 280.36 | Melting point: 365 K |
| Hexagonal, P61 | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: P 61 | Cell parameters from 18777 reflections |
| a = 10.1838 (13) Å | θ = 2.3–27.2° |
| c = 25.965 (3) Å | µ = 0.08 mm−1 |
| V = 2332.1 (5) Å3 | T = 173 K |
| Z = 6 | Needle, colourless |
| F(000) = 900 | 0.22 × 0.12 × 0.03 mm |
Data collection
| Bruker Kappa DUO APEXII diffractometer | 1358 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.059 |
| graphite | θmax = 27.2°, θmin = 2.3° |
| 0.5° φ scans and ω scans | h = −13→12 |
| 18777 measured reflections | k = −12→13 |
| 1759 independent reflections | l = −33→33 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.036 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.088 | w = 1/[σ2(Fo2) + (0.0377P)2 + 0.3273P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.05 | (Δ/σ)max < 0.001 |
| 1759 reflections | Δρmax = 0.14 e Å−3 |
| 195 parameters | Δρmin = −0.14 e Å−3 |
| 2 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0033 (7) |
Special details
| Experimental. Half sphere of data collected using SAINT strategy (Bruker, 2006). Crystal to detector distance = 40 mm; combination of φ and ω scans of 0.5°, 30 s per °, 2 iterations. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.73695 (19) | 0.77313 (19) | 0.97396 (7) | 0.0450 (5) | |
| N1 | 0.9118 (2) | 1.1026 (2) | 0.98992 (8) | 0.0385 (5) | |
| N2 | 0.7085 (2) | 0.8382 (2) | 0.89310 (8) | 0.0362 (5) | |
| H2 | 0.747 (3) | 0.915 (2) | 0.8671 (9) | 0.051 (8)* | |
| C1 | 1.0391 (3) | 1.2586 (3) | 0.98885 (11) | 0.0465 (7) | |
| H1A | 1.0402 | 1.3099 | 1.0214 | 0.056* | |
| H1B | 1.0241 | 1.3139 | 0.9602 | 0.056* | |
| C2 | 1.1898 (3) | 1.2671 (3) | 0.98225 (10) | 0.0406 (6) | |
| C3 | 1.3244 (4) | 1.4003 (3) | 0.99539 (12) | 0.0537 (8) | |
| H3 | 1.3197 | 1.4848 | 1.0087 | 0.064* | |
| C4 | 1.4632 (3) | 1.4096 (3) | 0.98919 (13) | 0.0595 (8) | |
| H4 | 1.5535 | 1.4999 | 0.9984 | 0.071* | |
| C5 | 1.4714 (3) | 1.2876 (4) | 0.96964 (13) | 0.0581 (8) | |
| H5 | 1.5671 | 1.2941 | 0.9652 | 0.070* | |
| C6 | 1.3402 (3) | 1.1566 (3) | 0.95657 (11) | 0.0463 (7) | |
| H6 | 1.3461 | 1.0725 | 0.9436 | 0.056* | |
| C7 | 1.1987 (3) | 1.1457 (3) | 0.96216 (10) | 0.0374 (6) | |
| C8 | 1.0561 (3) | 1.0021 (3) | 0.94725 (11) | 0.0378 (6) | |
| H8A | 1.0356 | 0.9225 | 0.9730 | 0.045* | |
| H8B | 1.0718 | 0.9668 | 0.9135 | 0.045* | |
| C9 | 0.9188 (3) | 1.0240 (3) | 0.94379 (10) | 0.0345 (5) | |
| H9 | 0.9283 | 1.0859 | 0.9126 | 0.041* | |
| C10 | 0.7785 (3) | 0.8671 (3) | 0.93857 (10) | 0.0343 (5) | |
| C11 | 0.5866 (3) | 0.6863 (3) | 0.87851 (10) | 0.0393 (6) | |
| H11A | 0.5110 | 0.6958 | 0.8573 | 0.047* | |
| H11B | 0.5349 | 0.6288 | 0.9100 | 0.047* | |
| C12 | 0.6459 (3) | 0.6001 (3) | 0.84871 (9) | 0.0373 (6) | |
| C13 | 0.7331 (4) | 0.5489 (4) | 0.87268 (12) | 0.0623 (9) | |
| H13 | 0.7528 | 0.5655 | 0.9085 | 0.075* | |
| C14 | 0.7920 (4) | 0.4739 (4) | 0.84516 (14) | 0.0685 (10) | |
| H14 | 0.8523 | 0.4402 | 0.8622 | 0.082* | |
| C15 | 0.7643 (4) | 0.4478 (4) | 0.79358 (13) | 0.0615 (9) | |
| H15 | 0.8053 | 0.3967 | 0.7747 | 0.074* | |
| C16 | 0.6769 (4) | 0.4962 (4) | 0.76946 (13) | 0.0680 (10) | |
| H16 | 0.6565 | 0.4782 | 0.7337 | 0.082* | |
| C17 | 0.6180 (4) | 0.5713 (3) | 0.79703 (12) | 0.0529 (7) | |
| H17 | 0.5568 | 0.6037 | 0.7798 | 0.063* | |
| C18 | 0.7705 (3) | 1.1059 (4) | 0.99296 (14) | 0.0573 (8) | |
| H18A | 0.6846 | 1.0019 | 0.9935 | 0.086* | |
| H18B | 0.7619 | 1.1594 | 0.9629 | 0.086* | |
| H18C | 0.7700 | 1.1586 | 1.0245 | 0.086* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0379 (9) | 0.0402 (10) | 0.0409 (10) | 0.0076 (8) | −0.0062 (8) | 0.0136 (8) |
| N1 | 0.0387 (12) | 0.0377 (11) | 0.0414 (12) | 0.0208 (10) | 0.0035 (9) | 0.0012 (9) |
| N2 | 0.0370 (11) | 0.0366 (11) | 0.0349 (11) | 0.0183 (9) | −0.0024 (9) | 0.0071 (9) |
| C1 | 0.0571 (16) | 0.0354 (14) | 0.0488 (16) | 0.0245 (13) | −0.0015 (13) | −0.0017 (12) |
| C2 | 0.0453 (14) | 0.0287 (12) | 0.0408 (14) | 0.0133 (11) | −0.0010 (12) | 0.0058 (11) |
| C3 | 0.065 (2) | 0.0303 (14) | 0.0522 (18) | 0.0137 (14) | −0.0029 (14) | 0.0044 (12) |
| C4 | 0.0422 (16) | 0.0433 (16) | 0.065 (2) | 0.0006 (13) | −0.0056 (15) | 0.0107 (15) |
| C5 | 0.0371 (15) | 0.0565 (18) | 0.067 (2) | 0.0128 (14) | −0.0042 (14) | 0.0108 (16) |
| C6 | 0.0365 (14) | 0.0439 (15) | 0.0532 (17) | 0.0162 (12) | 0.0031 (12) | 0.0094 (13) |
| C7 | 0.0381 (13) | 0.0290 (12) | 0.0388 (13) | 0.0121 (11) | 0.0011 (11) | 0.0073 (11) |
| C8 | 0.0336 (12) | 0.0299 (12) | 0.0459 (14) | 0.0130 (11) | 0.0036 (11) | −0.0001 (11) |
| C9 | 0.0349 (13) | 0.0321 (12) | 0.0340 (12) | 0.0149 (10) | 0.0029 (10) | 0.0071 (10) |
| C10 | 0.0315 (12) | 0.0360 (13) | 0.0356 (13) | 0.0170 (10) | 0.0005 (10) | 0.0067 (10) |
| C11 | 0.0295 (13) | 0.0442 (14) | 0.0403 (14) | 0.0156 (11) | −0.0071 (11) | 0.0036 (11) |
| C12 | 0.0300 (12) | 0.0325 (13) | 0.0375 (14) | 0.0067 (10) | 0.0004 (11) | 0.0021 (11) |
| C13 | 0.073 (2) | 0.097 (3) | 0.0420 (17) | 0.061 (2) | −0.0073 (15) | −0.0093 (16) |
| C14 | 0.069 (2) | 0.089 (3) | 0.067 (2) | 0.054 (2) | −0.0099 (18) | −0.0217 (19) |
| C15 | 0.0525 (18) | 0.0532 (18) | 0.064 (2) | 0.0151 (15) | 0.0066 (16) | −0.0209 (16) |
| C16 | 0.085 (3) | 0.0545 (19) | 0.0404 (16) | 0.0168 (18) | −0.0052 (17) | −0.0131 (15) |
| C17 | 0.0631 (19) | 0.0404 (15) | 0.0440 (16) | 0.0174 (14) | −0.0140 (14) | −0.0050 (13) |
| C18 | 0.0526 (17) | 0.067 (2) | 0.065 (2) | 0.0395 (16) | 0.0052 (15) | −0.0012 (16) |
Geometric parameters (Å, °)
| O1—C10 | 1.239 (3) | C8—H8A | 0.9900 |
| N1—C18 | 1.458 (3) | C8—H8B | 0.9900 |
| N1—C9 | 1.462 (3) | C9—C10 | 1.527 (3) |
| N1—C1 | 1.465 (3) | C9—H9 | 1.0000 |
| N2—C10 | 1.334 (3) | C11—C12 | 1.504 (4) |
| N2—C11 | 1.469 (3) | C11—H11A | 0.9900 |
| N2—H2 | 0.957 (10) | C11—H11B | 0.9900 |
| C1—C2 | 1.503 (4) | C12—C17 | 1.373 (4) |
| C1—H1A | 0.9900 | C12—C13 | 1.383 (4) |
| C1—H1B | 0.9900 | C13—C14 | 1.383 (4) |
| C2—C7 | 1.386 (4) | C13—H13 | 0.9500 |
| C2—C3 | 1.406 (4) | C14—C15 | 1.367 (5) |
| C3—C4 | 1.378 (4) | C14—H14 | 0.9500 |
| C3—H3 | 0.9500 | C15—C16 | 1.365 (5) |
| C4—C5 | 1.382 (5) | C15—H15 | 0.9500 |
| C4—H4 | 0.9500 | C16—C17 | 1.385 (5) |
| C5—C6 | 1.377 (4) | C16—H16 | 0.9500 |
| C5—H5 | 0.9500 | C17—H17 | 0.9500 |
| C6—C7 | 1.396 (4) | C18—H18A | 0.9800 |
| C6—H6 | 0.9500 | C18—H18B | 0.9800 |
| C7—C8 | 1.508 (4) | C18—H18C | 0.9800 |
| C8—C9 | 1.524 (3) | ||
| C18—N1—C9 | 112.1 (2) | C8—C9—C10 | 107.39 (19) |
| C18—N1—C1 | 109.0 (2) | N1—C9—H9 | 109.5 |
| C9—N1—C1 | 108.61 (19) | C8—C9—H9 | 109.5 |
| C10—N2—C11 | 122.5 (2) | C10—C9—H9 | 109.5 |
| C10—N2—H2 | 119.4 (18) | O1—C10—N2 | 123.2 (2) |
| C11—N2—H2 | 117.6 (18) | O1—C10—C9 | 121.5 (2) |
| N1—C1—C2 | 112.9 (2) | N2—C10—C9 | 115.3 (2) |
| N1—C1—H1A | 109.0 | N2—C11—C12 | 111.9 (2) |
| C2—C1—H1A | 109.0 | N2—C11—H11A | 109.2 |
| N1—C1—H1B | 109.0 | C12—C11—H11A | 109.2 |
| C2—C1—H1B | 109.0 | N2—C11—H11B | 109.2 |
| H1A—C1—H1B | 107.8 | C12—C11—H11B | 109.2 |
| C7—C2—C3 | 119.0 (3) | H11A—C11—H11B | 107.9 |
| C7—C2—C1 | 120.8 (2) | C17—C12—C13 | 117.6 (3) |
| C3—C2—C1 | 120.2 (3) | C17—C12—C11 | 121.8 (3) |
| C4—C3—C2 | 120.6 (3) | C13—C12—C11 | 120.6 (2) |
| C4—C3—H3 | 119.7 | C12—C13—C14 | 120.9 (3) |
| C2—C3—H3 | 119.7 | C12—C13—H13 | 119.5 |
| C3—C4—C5 | 120.1 (3) | C14—C13—H13 | 119.5 |
| C3—C4—H4 | 119.9 | C15—C14—C13 | 120.6 (3) |
| C5—C4—H4 | 119.9 | C15—C14—H14 | 119.7 |
| C6—C5—C4 | 119.7 (3) | C13—C14—H14 | 119.7 |
| C6—C5—H5 | 120.2 | C16—C15—C14 | 119.2 (3) |
| C4—C5—H5 | 120.2 | C16—C15—H15 | 120.4 |
| C5—C6—C7 | 121.0 (3) | C14—C15—H15 | 120.4 |
| C5—C6—H6 | 119.5 | C15—C16—C17 | 120.2 (3) |
| C7—C6—H6 | 119.5 | C15—C16—H16 | 119.9 |
| C2—C7—C6 | 119.6 (2) | C17—C16—H16 | 119.9 |
| C2—C7—C8 | 120.0 (2) | C12—C17—C16 | 121.5 (3) |
| C6—C7—C8 | 120.4 (2) | C12—C17—H17 | 119.3 |
| C7—C8—C9 | 112.5 (2) | C16—C17—H17 | 119.3 |
| C7—C8—H8A | 109.1 | N1—C18—H18A | 109.5 |
| C9—C8—H8A | 109.1 | N1—C18—H18B | 109.5 |
| C7—C8—H8B | 109.1 | H18A—C18—H18B | 109.5 |
| C9—C8—H8B | 109.1 | N1—C18—H18C | 109.5 |
| H8A—C8—H8B | 107.8 | H18A—C18—H18C | 109.5 |
| N1—C9—C8 | 109.34 (19) | H18B—C18—H18C | 109.5 |
| N1—C9—C10 | 111.7 (2) | ||
| C18—N1—C1—C2 | −176.3 (2) | C1—N1—C9—C10 | −172.63 (19) |
| C9—N1—C1—C2 | −53.9 (3) | C7—C8—C9—N1 | −48.2 (3) |
| N1—C1—C2—C7 | 20.3 (4) | C7—C8—C9—C10 | −169.6 (2) |
| N1—C1—C2—C3 | −161.2 (2) | C11—N2—C10—O1 | −7.5 (4) |
| C7—C2—C3—C4 | −1.0 (4) | C11—N2—C10—C9 | 170.4 (2) |
| C1—C2—C3—C4 | −179.6 (3) | N1—C9—C10—O1 | −53.7 (3) |
| C2—C3—C4—C5 | 0.4 (5) | C8—C9—C10—O1 | 66.2 (3) |
| C3—C4—C5—C6 | −0.2 (5) | N1—C9—C10—N2 | 128.3 (2) |
| C4—C5—C6—C7 | 0.8 (4) | C8—C9—C10—N2 | −111.8 (2) |
| C3—C2—C7—C6 | 1.6 (4) | C10—N2—C11—C12 | −94.2 (3) |
| C1—C2—C7—C6 | −179.9 (2) | N2—C11—C12—C17 | −109.0 (3) |
| C3—C2—C7—C8 | −179.4 (2) | N2—C11—C12—C13 | 70.0 (3) |
| C1—C2—C7—C8 | −0.8 (4) | C17—C12—C13—C14 | 1.2 (5) |
| C5—C6—C7—C2 | −1.5 (4) | C11—C12—C13—C14 | −177.9 (3) |
| C5—C6—C7—C8 | 179.4 (3) | C12—C13—C14—C15 | −0.4 (6) |
| C2—C7—C8—C9 | 14.7 (3) | C13—C14—C15—C16 | −0.3 (5) |
| C6—C7—C8—C9 | −166.2 (2) | C14—C15—C16—C17 | 0.3 (5) |
| C18—N1—C9—C8 | −170.9 (2) | C13—C12—C17—C16 | −1.1 (4) |
| C1—N1—C9—C8 | 68.7 (2) | C11—C12—C17—C16 | 177.9 (3) |
| C18—N1—C9—C10 | −52.2 (3) | C15—C16—C17—C12 | 0.4 (5) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2···O1i | 0.96 (2) | 1.92 (2) | 2.852 (3) | 165 (3) |
Symmetry codes: (i) y, −x+y+1, z−1/6.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HG2752).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050361/hg2752sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050361/hg2752Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


