Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Dec 11;67(Pt 1):o71. doi: 10.1107/S1600536810050609

2-Amino-4-(2,4-dichloro­phen­yl)-6-(naphthalen-1-yl)nicotinonitrile

Yuan-Feng Ye a,*, Huai-Qing Wang a, Zhi-Qiang Feng a
PMCID: PMC3050377  PMID: 21522783

Abstract

In the crystal structure of the title compound, C22H13Cl2N3, the mol­ecules are connected via inter­molecular C—H⋯N and N—H⋯N hydrogen bonds, forming a three-dimensional network. The dihedral angles between naphthyl ring system and the pyridyl and benzene rings are 55.04 (7) and 75.87 (7)°, respectively, whereas the pyridyl and benzene rings are oriented at a dihedral angle of 59.56 (8)°.

Related literature

For the synthetic procedure, see: Mantri et al. (2008 ▶). For the use of the title compound in the preparation of medicines, see: Mkhalid et al. (2006 ▶). For general background to this type of compound, see: Moreau & Huber (1999 ▶).graphic file with name e-67-00o71-scheme1.jpg

Experimental

Crystal data

  • C22H13Cl2N3

  • M r = 390.25

  • Triclinic, Inline graphic

  • a = 9.5020 (19) Å

  • b = 10.054 (2) Å

  • c = 10.735 (2) Å

  • α = 72.78 (3)°

  • β = 89.17 (3)°

  • γ = 74.81 (3)°

  • V = 943.1 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 0.36 mm−1

  • T = 293 K

  • 0.30 × 0.10 × 0.10 mm

Data collection

  • Entaf–Nonius CAD-4 diffractometer

  • Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.901, T max = 0.965

  • 3686 measured reflections

  • 3463 independent reflections

  • 2648 reflections with I > 2σ(I)

  • R int = 0.014

  • 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

  • R[F 2 > 2σ(F 2)] = 0.048

  • wR(F 2) = 0.146

  • S = 1.00

  • 3463 reflections

  • 252 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.18 e Å−3

  • Δρmin = −0.37 e Å−3

Data collection: CAD-4 Software (Enraf–Nonius, 1985 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050609/bq2258sup1.cif

e-67-00o71-sup1.cif (19.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050609/bq2258Isup2.hkl

e-67-00o71-Isup2.hkl (169.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
N2—H2A⋯N1i 0.85 (3) 2.19 (3) 3.034 (3) 176 (2)
C4—H4A⋯N3ii 0.93 2.62 3.488 (4) 155

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank the Center of Testing and Analysis, Nanjing University, and the fund of Jinling Institute of Technology (jit-n-2009–017) for support..

supplementary crystallographic information

Comment

The title compound, C22H13Cl2N3,(I), contains amino group, which can react with different groups to prepare various function organic compounds. It is a kind of aromatic organic intermediate which can be used for many fields such as medicine (Mantri et al., 2008). The molecular structure of (I) is shown in Fig. 1. In (I), the naphthyl and the two rings, pyridyl and phenyl are oriented with different dihedral angles; 55.04 (7) ° between naphthyl and pyridyl, 75.87 (7) ° between naphthyl and phenyl and 59.56 (8) ° between pyridyl and phenyl. In the crystal structure of the title compound, the molecules were connected together via N—H···N and C—H···N intermolecular hydrogen bonds to form a three dimensional network, which seems to be very effective in the stabilization of the crystal structure.

Experimental

The title compound, (I) was prepared by the literature method (Mantri et al., 2008). Crystals suitable for X-ray analysis were obtained by dissolving (I) (0.5 g) in methanol (20 ml) and evaporating the solvent slowly at room temperature for about 5 d.

Refinement

All H atoms were positioned geometrically and constrained to ride on their parent atoms, with C—H = 0.93 Å for aromatic H and 0.86 Å for N—H, respectively. The Uiso(H) = xUeq(C), where x = 1.2 for aromatic H, and x = 1.5 for other H.

Figures

Fig. 1.

Fig. 1.

The molecular structure of (I), with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

A packing diagram for (I). C—H···N and N—H···N hydrogen bonds are shown by dashed lines.

Crystal data

C22H13Cl2N3 Z = 2
Mr = 390.25 F(000) = 400
Triclinic, P1 Dx = 1.374 Mg m−3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 9.5020 (19) Å Cell parameters from 25 reflections
b = 10.054 (2) Å θ = 10–14°
c = 10.735 (2) Å µ = 0.36 mm−1
α = 72.78 (3)° T = 293 K
β = 89.17 (3)° Block, colourless
γ = 74.81 (3)° 0.30 × 0.10 × 0.10 mm
V = 943.1 (3) Å3

Data collection

Entaf–Nonius CAD-4 diffractometer 2648 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.014
graphite θmax = 25.4°, θmin = 2.0°
ω/2θ scans h = 0→11
Absorption correction: ψ scan (North et al., 1968) k = −11→12
Tmin = 0.901, Tmax = 0.965 l = −12→12
3686 measured reflections 3 standard reflections every 200 reflections
3463 independent reflections intensity decay: 1%

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146 H atoms treated by a mixture of independent and constrained refinement
S = 1.00 w = 1/[σ2(Fo2) + (0.095P)2 + ] where P = (Fo2 + 2Fc2)/3
3463 reflections (Δ/σ)max < 0.001
252 parameters Δρmax = 0.18 e Å−3
0 restraints Δρmin = −0.37 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 −0.37446 (8) 0.08316 (9) 0.92700 (9) 0.0687 (3)
N1 0.36411 (19) 0.4640 (2) 0.89712 (17) 0.0331 (4)
C1 −0.0992 (3) 0.2943 (3) 0.9925 (3) 0.0425 (6)
H1B −0.0942 0.3531 1.0439 0.051*
Cl2 0.13996 (8) 0.12749 (9) 0.73801 (8) 0.0635 (3)
N2 0.4248 (2) 0.3529 (3) 1.1161 (2) 0.0414 (5)
H2A 0.480 (3) 0.408 (3) 1.110 (2) 0.044 (7)*
H2B 0.398 (3) 0.313 (3) 1.193 (3) 0.053 (8)*
C2 −0.2176 (3) 0.2375 (3) 0.9987 (3) 0.0477 (6)
H2C −0.2919 0.2580 1.0532 0.057*
C3 −0.2235 (3) 0.1508 (3) 0.9234 (3) 0.0442 (6)
N3 0.1702 (3) 0.1711 (3) 1.2494 (2) 0.0542 (6)
C4 −0.1143 (3) 0.1165 (3) 0.8436 (2) 0.0426 (6)
H4A −0.1192 0.0557 0.7942 0.051*
C5 0.0034 (3) 0.1752 (3) 0.8384 (2) 0.0390 (6)
C6 0.0130 (2) 0.2659 (2) 0.9114 (2) 0.0350 (5)
C7 0.1356 (2) 0.3340 (2) 0.9053 (2) 0.0347 (5)
C8 0.1657 (3) 0.4256 (3) 0.7898 (2) 0.0394 (6)
H8A 0.1114 0.4431 0.7125 0.047*
C9 0.2771 (2) 0.4911 (2) 0.7898 (2) 0.0353 (5)
C10 0.3364 (2) 0.3766 (2) 1.0103 (2) 0.0315 (5)
C11 0.2194 (2) 0.3119 (2) 1.0184 (2) 0.0327 (5)
C12 0.1897 (2) 0.2309 (3) 1.1454 (2) 0.0372 (5)
C13 0.3005 (2) 0.6054 (3) 0.6730 (2) 0.0364 (5)
C14 0.1836 (3) 0.7200 (3) 0.6165 (3) 0.0528 (7)
H14A 0.0907 0.7181 0.6441 0.063*
C15 0.2017 (4) 0.8417 (3) 0.5168 (3) 0.0660 (9)
H15A 0.1209 0.9184 0.4783 0.079*
C16 0.3370 (3) 0.8461 (3) 0.4774 (3) 0.0615 (8)
H16A 0.3486 0.9278 0.4140 0.074*
C17 0.4602 (3) 0.7293 (3) 0.5308 (2) 0.0459 (6)
C18 0.6025 (3) 0.7317 (4) 0.4896 (3) 0.0615 (8)
H18A 0.6156 0.8140 0.4280 0.074*
C19 0.7199 (3) 0.6162 (4) 0.5385 (3) 0.0623 (8)
H19A 0.8128 0.6208 0.5126 0.075*
C20 0.7004 (3) 0.4907 (3) 0.6275 (3) 0.0520 (7)
H20A 0.7801 0.4101 0.6576 0.062*
C21 0.5663 (3) 0.4846 (3) 0.6708 (2) 0.0411 (6)
H21A 0.5561 0.3999 0.7306 0.049*
C22 0.4431 (3) 0.6037 (3) 0.6270 (2) 0.0355 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0450 (4) 0.0707 (5) 0.1083 (7) −0.0386 (4) 0.0167 (4) −0.0338 (5)
N1 0.0318 (10) 0.0407 (11) 0.0316 (10) −0.0177 (8) 0.0053 (8) −0.0112 (8)
C1 0.0358 (13) 0.0445 (14) 0.0554 (15) −0.0182 (11) 0.0083 (11) −0.0211 (12)
Cl2 0.0653 (5) 0.0837 (5) 0.0692 (5) −0.0447 (4) 0.0347 (4) −0.0439 (4)
N2 0.0432 (12) 0.0565 (14) 0.0308 (11) −0.0301 (11) 0.0007 (9) −0.0078 (10)
C2 0.0350 (13) 0.0484 (15) 0.0667 (17) −0.0175 (11) 0.0154 (12) −0.0227 (13)
C3 0.0327 (13) 0.0409 (14) 0.0607 (16) −0.0206 (11) 0.0027 (11) −0.0083 (12)
N3 0.0611 (15) 0.0587 (14) 0.0428 (13) −0.0297 (12) 0.0063 (11) −0.0038 (11)
C4 0.0444 (14) 0.0422 (14) 0.0486 (14) −0.0229 (12) 0.0031 (11) −0.0148 (11)
C5 0.0370 (13) 0.0454 (14) 0.0371 (12) −0.0202 (11) 0.0064 (10) −0.0083 (11)
C6 0.0315 (12) 0.0369 (12) 0.0376 (12) −0.0161 (10) −0.0002 (10) −0.0068 (10)
C7 0.0308 (11) 0.0372 (12) 0.0412 (13) −0.0154 (10) 0.0055 (10) −0.0141 (10)
C8 0.0367 (13) 0.0532 (15) 0.0345 (12) −0.0242 (11) 0.0004 (10) −0.0117 (11)
C9 0.0351 (12) 0.0412 (13) 0.0338 (12) −0.0166 (10) 0.0067 (10) −0.0124 (10)
C10 0.0307 (11) 0.0338 (12) 0.0339 (12) −0.0131 (9) 0.0056 (9) −0.0122 (9)
C11 0.0314 (11) 0.0344 (12) 0.0359 (12) −0.0149 (9) 0.0062 (9) −0.0110 (10)
C12 0.0361 (12) 0.0378 (13) 0.0418 (14) −0.0186 (10) 0.0031 (10) −0.0106 (11)
C13 0.0376 (13) 0.0434 (13) 0.0310 (12) −0.0179 (11) 0.0030 (10) −0.0092 (10)
C14 0.0411 (15) 0.0617 (18) 0.0483 (15) −0.0126 (13) 0.0071 (12) −0.0071 (13)
C15 0.0593 (19) 0.0566 (18) 0.0579 (18) −0.0013 (15) 0.0045 (15) 0.0059 (14)
C16 0.0656 (19) 0.0498 (17) 0.0534 (17) −0.0141 (15) 0.0135 (14) 0.0057 (13)
C17 0.0513 (15) 0.0503 (15) 0.0363 (13) −0.0222 (13) 0.0078 (11) −0.0062 (11)
C18 0.065 (2) 0.069 (2) 0.0523 (16) −0.0370 (17) 0.0211 (14) −0.0053 (15)
C19 0.0465 (16) 0.088 (2) 0.0569 (18) −0.0307 (17) 0.0174 (14) −0.0192 (16)
C20 0.0407 (14) 0.0675 (18) 0.0458 (15) −0.0114 (13) 0.0085 (12) −0.0174 (14)
C21 0.0445 (14) 0.0472 (14) 0.0315 (12) −0.0153 (12) 0.0056 (10) −0.0094 (11)
C22 0.0396 (13) 0.0437 (13) 0.0290 (11) −0.0191 (11) 0.0039 (9) −0.0125 (10)

Geometric parameters (Å, °)

Cl1—C3 1.736 (2) C9—C13 1.488 (3)
N1—C10 1.341 (3) C10—C11 1.417 (3)
N1—C9 1.345 (3) C11—C12 1.434 (3)
C1—C2 1.382 (3) C13—C14 1.365 (4)
C1—C6 1.392 (3) C13—C22 1.432 (3)
C1—H1B 0.9300 C14—C15 1.414 (4)
Cl2—C5 1.736 (2) C14—H14A 0.9300
N2—C10 1.347 (3) C15—C16 1.356 (4)
N2—H2A 0.84 (3) C15—H15A 0.9300
N2—H2B 0.86 (3) C16—C17 1.406 (4)
C2—C3 1.365 (4) C16—H16A 0.9300
C2—H2C 0.9300 C17—C18 1.421 (4)
C3—C4 1.376 (3) C17—C22 1.421 (3)
N3—C12 1.139 (3) C18—C19 1.358 (4)
C4—C5 1.388 (3) C18—H18A 0.9300
C4—H4A 0.9300 C19—C20 1.394 (4)
C5—C6 1.387 (3) C19—H19A 0.9300
C6—C7 1.490 (3) C20—C21 1.360 (4)
C7—C8 1.386 (3) C20—H20A 0.9300
C7—C11 1.390 (3) C21—C22 1.405 (3)
C8—C9 1.384 (3) C21—H21A 0.9300
C8—H8A 0.9300
C10—N1—C9 118.57 (19) C7—C11—C10 119.3 (2)
C2—C1—C6 121.8 (2) C7—C11—C12 123.0 (2)
C2—C1—H1B 119.1 C10—C11—C12 117.6 (2)
C6—C1—H1B 119.1 N3—C12—C11 175.9 (3)
C10—N2—H2A 117.4 (17) C14—C13—C22 120.1 (2)
C10—N2—H2B 118.6 (19) C14—C13—C9 118.0 (2)
H2A—N2—H2B 118 (2) C22—C13—C9 121.7 (2)
C3—C2—C1 118.7 (2) C13—C14—C15 121.0 (3)
C3—C2—H2C 120.7 C13—C14—H14A 119.5
C1—C2—H2C 120.7 C15—C14—H14A 119.5
C2—C3—C4 122.0 (2) C16—C15—C14 119.8 (3)
C2—C3—Cl1 119.0 (2) C16—C15—H15A 120.1
C4—C3—Cl1 118.96 (19) C14—C15—H15A 120.1
C3—C4—C5 118.3 (2) C15—C16—C17 121.2 (3)
C3—C4—H4A 120.8 C15—C16—H16A 119.4
C5—C4—H4A 120.8 C17—C16—H16A 119.4
C6—C5—C4 121.7 (2) C16—C17—C18 121.9 (3)
C6—C5—Cl2 121.38 (17) C16—C17—C22 119.7 (2)
C4—C5—Cl2 116.88 (19) C18—C17—C22 118.4 (2)
C5—C6—C1 117.4 (2) C19—C18—C17 121.3 (3)
C5—C6—C7 123.1 (2) C19—C18—H18A 119.3
C1—C6—C7 119.5 (2) C17—C18—H18A 119.3
C8—C7—C11 118.0 (2) C18—C19—C20 119.6 (3)
C8—C7—C6 121.8 (2) C18—C19—H19A 120.2
C11—C7—C6 120.2 (2) C20—C19—H19A 120.2
C9—C8—C7 119.8 (2) C21—C20—C19 120.8 (3)
C9—C8—H8A 120.1 C21—C20—H20A 119.6
C7—C8—H8A 120.1 C19—C20—H20A 119.6
N1—C9—C8 122.7 (2) C20—C21—C22 121.4 (2)
N1—C9—C13 115.38 (19) C20—C21—H21A 119.3
C8—C9—C13 121.8 (2) C22—C21—H21A 119.3
N1—C10—N2 117.0 (2) C21—C22—C17 118.2 (2)
N1—C10—C11 121.53 (19) C21—C22—C13 123.8 (2)
N2—C10—C11 121.4 (2) C17—C22—C13 118.0 (2)
C6—C1—C2—C3 0.3 (4) N2—C10—C11—C7 −176.9 (2)
C1—C2—C3—C4 1.1 (4) N1—C10—C11—C12 −174.4 (2)
C1—C2—C3—Cl1 −178.1 (2) N2—C10—C11—C12 5.6 (3)
C2—C3—C4—C5 −1.3 (4) C7—C11—C12—N3 −155 (4)
Cl1—C3—C4—C5 177.91 (18) C10—C11—C12—N3 22 (4)
C3—C4—C5—C6 0.1 (4) N1—C9—C13—C14 −123.8 (2)
C3—C4—C5—Cl2 179.22 (19) C8—C9—C13—C14 51.5 (3)
C4—C5—C6—C1 1.2 (4) N1—C9—C13—C22 50.6 (3)
Cl2—C5—C6—C1 −177.86 (18) C8—C9—C13—C22 −134.1 (2)
C4—C5—C6—C7 −178.2 (2) C22—C13—C14—C15 −3.2 (4)
Cl2—C5—C6—C7 2.7 (3) C9—C13—C14—C15 171.4 (3)
C2—C1—C6—C5 −1.4 (4) C13—C14—C15—C16 −0.9 (5)
C2—C1—C6—C7 178.0 (2) C14—C15—C16—C17 2.3 (5)
C5—C6—C7—C8 59.9 (3) C15—C16—C17—C18 179.4 (3)
C1—C6—C7—C8 −119.5 (3) C15—C16—C17—C22 0.4 (5)
C5—C6—C7—C11 −123.1 (3) C16—C17—C18—C19 −177.6 (3)
C1—C6—C7—C11 57.5 (3) C22—C17—C18—C19 1.3 (4)
C11—C7—C8—C9 0.3 (4) C17—C18—C19—C20 2.2 (5)
C6—C7—C8—C9 177.4 (2) C18—C19—C20—C21 −3.1 (4)
C10—N1—C9—C8 −4.0 (3) C19—C20—C21—C22 0.4 (4)
C10—N1—C9—C13 171.27 (19) C20—C21—C22—C17 3.1 (4)
C7—C8—C9—N1 3.5 (4) C20—C21—C22—C13 −177.5 (2)
C7—C8—C9—C13 −171.4 (2) C16—C17—C22—C21 175.1 (2)
C9—N1—C10—N2 −179.4 (2) C18—C17—C22—C21 −3.9 (4)
C9—N1—C10—C11 0.7 (3) C16—C17—C22—C13 −4.4 (4)
C8—C7—C11—C10 −3.4 (3) C18—C17—C22—C13 176.7 (2)
C6—C7—C11—C10 179.4 (2) C14—C13—C22—C21 −173.7 (2)
C8—C7—C11—C12 173.9 (2) C9—C13—C22—C21 12.0 (3)
C6—C7—C11—C12 −3.3 (3) C14—C13—C22—C17 5.7 (3)
N1—C10—C11—C7 3.1 (3) C9—C13—C22—C17 −168.6 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2A···N1i 0.85 (3) 2.19 (3) 3.034 (3) 176 (2)
C4—H4A···N3ii 0.93 2.62 3.488 (4) 155

Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x, −y, −z+2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BQ2258).

References

  1. Enraf–Nonius (1985). CAD-4 Software Enraf–Nonius, Delft, The Netherlands.
  2. Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
  3. Mantri, M., Graaf, O., Veldhoven, J. & IJzerman, A. P. (2008). J. Med. Chem. 51, 4449–4455.
  4. Mkhalid, I. A. I., Coventry, D. N., Albesa-Jove, D., Batsanov, A. S., Howard, J. A. K. & Marder, T. B. (2006). Angew. Chem. Int. Ed. 45, 489–491. [DOI] [PubMed]
  5. Moreau, J. L. & Huber, G. (1999). Brain. Res. Rev. 31, 65–82. [DOI] [PubMed]
  6. North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050609/bq2258sup1.cif

e-67-00o71-sup1.cif (19.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050609/bq2258Isup2.hkl

e-67-00o71-Isup2.hkl (169.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES