Abstract
In the title zwitterionic molecule, C6H5N5, the tetrazole and pyridine rings are nearly coplanar, making a dihedral angle of 2.08 (1)°. In the crystal, molecules are connected by classical N—H⋯N and weak C—H⋯N hydrogen bonds.
Related literature
For applications of tetrazole derivatives, see: Zhao et al. (2008 ▶); Fu et al. (2008 ▶, 2009 ▶). For the crystal structures and properties of related compounds, see: Fu et al. (2007 ▶, 2009 ▶); Fu & Xiong (2008 ▶).
Experimental
Crystal data
C6H5N5
M r = 147.15
Monoclinic,
a = 7.0508 (14) Å
b = 7.4007 (15) Å
c = 11.926 (2) Å
β = 96.56 (3)°
V = 618.2 (2) Å3
Z = 4
Mo Kα radiation
μ = 0.11 mm−1
T = 298 K
0.30 × 0.20 × 0.15 mm
Data collection
Rigaku Mercury2 diffractometer
3122 measured reflections
719 independent reflections
633 reflections with I > 2σ(I)
R int = 0.039
Refinement
R[F 2 > 2σ(F 2)] = 0.040
wR(F 2) = 0.096
S = 1.13
719 reflections
100 parameters
2 restraints
H-atom parameters constrained
Δρmax = 0.23 e Å−3
Δρmin = −0.21 e Å−3
Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050257/xu5093sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050257/xu5093Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1A⋯N2i | 0.86 | 1.89 | 2.745 (4) | 176 |
| N1—H1A⋯N3i | 0.86 | 2.52 | 3.306 (4) | 152 |
| C1—H1⋯N5ii | 0.93 | 2.46 | 3.308 (4) | 152 |
| C5—H5⋯N4iii | 0.93 | 2.38 | 3.168 (4) | 142 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
This work was supported by a start-up grant from Southeast University, China.
supplementary crystallographic information
Comment
Tetrazole compounds attracted more attention as phase transition dielectric materials for its application in micro-electronics, memory storage. With the purpose of obtaining phase transition crystals of tetrazole compound, a series of new materials have been elaborated with this organic molecule (Zhao et al., 2008; Fu et al., 2008; Fu et al., 2007; Fu & Xiong 2008). We report here the crystal structure of the title compound, 5-(pyridinium-4-yl)tetrazol-1-ide.
The dielectric constant of title compound as a function of temperature indicates that the permittivity is basically temperature-independent, suggesting that this compound should be not a real ferroelectrics or there may be no distinct phase transition occurred within the measured temperature range. Similarly, below the melting point (413K) of the compound, the dielectric constant as a function of temperature also goes smoothly, and there is no dielectric anomaly observed (dielectric constant equaling to 6.1 to 7.9).
In the title compound (Fig.1), the pyridine N atom is protonated, thus indicating a positive charge in the pyridine N atom. And the tetrazole ring was showing a negative charge to make the charge balance. The tetrazole and pyridine rings are twisted from each other by a dihedral angle of 2.08 (1)°. The geometric parameters of the tetrazole rings are comparable to those in related molecules (Fu et al., 2009).
In the crystal structure the molecules are connected by classic N—H···N and weak C—H···N hydrogen bonds (Table 1).
Experimental
5-(Pyridinium-4-yl)tetrazol-1-ide was obtained commercially, and the single crystals were obtained from an ethanol solution.
Refinement
H atoms attached to N atoms were located in a difference Fourier map, and refined in riding mode with N–H = 0.86 Å and Uiso(H) = 1.2Ueq(N). Other H atoms were fixed geometrically and treated as riding with C–H = 0.93 Å and Uiso(H) = 1.2Ueq(C). As no significant anomalous scattering, Friedel pairs were merged.
Figures
Fig. 1.
A view of the title compound with the atomic numbering scheme. Displacement ellipsoids were drawn at the 30% probability level.
Crystal data
| C6H5N5 | F(000) = 304 |
| Mr = 147.15 | Dx = 1.581 Mg m−3 |
| Monoclinic, Cc | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: C -2yc | Cell parameters from 1425 reflections |
| a = 7.0508 (14) Å | θ = 3.4–24.5° |
| b = 7.4007 (15) Å | µ = 0.11 mm−1 |
| c = 11.926 (2) Å | T = 298 K |
| β = 96.56 (3)° | Block, colorless |
| V = 618.2 (2) Å3 | 0.30 × 0.20 × 0.15 mm |
| Z = 4 |
Data collection
| Rigaku Mercury2 diffractometer | 633 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.039 |
| graphite | θmax = 27.5°, θmin = 3.4° |
| Detector resolution: 13.6612 pixels mm-1 | h = −9→9 |
| CCD profile fitting scans | k = −9→9 |
| 3122 measured reflections | l = −15→15 |
| 719 independent reflections |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.096 | H-atom parameters constrained |
| S = 1.13 | w = 1/[σ2(Fo2) + (0.056P)2] where P = (Fo2 + 2Fc2)/3 |
| 719 reflections | (Δ/σ)max < 0.001 |
| 100 parameters | Δρmax = 0.23 e Å−3 |
| 2 restraints | Δρmin = −0.21 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 1.0961 (4) | 0.3035 (4) | 0.4442 (2) | 0.0382 (6) | |
| H1A | 1.1462 | 0.3791 | 0.4937 | 0.046* | |
| N2 | 0.7525 (4) | −0.0341 (4) | 0.1099 (2) | 0.0375 (6) | |
| N3 | 0.7094 (4) | −0.1968 (3) | 0.0653 (2) | 0.0443 (7) | |
| N4 | 0.7884 (4) | −0.3224 (3) | 0.1321 (2) | 0.0444 (8) | |
| N5 | 0.8864 (3) | −0.2457 (4) | 0.2218 (2) | 0.0395 (7) | |
| C1 | 0.9963 (5) | 0.3659 (4) | 0.3504 (3) | 0.0397 (9) | |
| H1 | 0.9805 | 0.4896 | 0.3394 | 0.048* | |
| C2 | 0.9185 (4) | 0.2487 (4) | 0.2718 (3) | 0.0368 (7) | |
| H2 | 0.8496 | 0.2920 | 0.2062 | 0.044* | |
| C3 | 0.9406 (4) | 0.0634 (4) | 0.2879 (2) | 0.0290 (6) | |
| C4 | 1.0442 (4) | 0.0050 (4) | 0.3861 (2) | 0.0372 (8) | |
| H4 | 1.0622 | −0.1179 | 0.3996 | 0.045* | |
| C5 | 1.1202 (4) | 0.1280 (4) | 0.4632 (3) | 0.0391 (7) | |
| H5 | 1.1896 | 0.0888 | 0.5298 | 0.047* | |
| C6 | 0.8605 (4) | −0.0704 (4) | 0.2067 (2) | 0.0305 (7) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0486 (14) | 0.0342 (16) | 0.0299 (14) | −0.0035 (13) | −0.0037 (10) | −0.0059 (13) |
| N2 | 0.0465 (15) | 0.0288 (12) | 0.0353 (13) | 0.0003 (11) | −0.0040 (10) | 0.0010 (11) |
| N3 | 0.0595 (17) | 0.0348 (13) | 0.0359 (13) | −0.0060 (15) | −0.0060 (11) | −0.0082 (14) |
| N4 | 0.062 (2) | 0.0293 (14) | 0.0404 (19) | −0.0004 (13) | −0.0010 (15) | −0.0045 (12) |
| N5 | 0.0533 (16) | 0.0251 (13) | 0.0377 (16) | 0.0014 (11) | −0.0051 (13) | −0.0026 (11) |
| C1 | 0.0455 (17) | 0.029 (2) | 0.0431 (16) | 0.0041 (15) | 0.0005 (13) | 0.0020 (15) |
| C2 | 0.0422 (17) | 0.0311 (16) | 0.0346 (16) | 0.0031 (13) | −0.0059 (12) | 0.0052 (13) |
| C3 | 0.0355 (14) | 0.0240 (15) | 0.0264 (13) | 0.0001 (12) | −0.0007 (11) | −0.0009 (11) |
| C4 | 0.0514 (19) | 0.0257 (18) | 0.0319 (15) | 0.0008 (12) | −0.0060 (12) | −0.0004 (13) |
| C5 | 0.0512 (18) | 0.0331 (16) | 0.0304 (14) | 0.0035 (14) | −0.0069 (13) | −0.0014 (13) |
| C6 | 0.0369 (16) | 0.0263 (15) | 0.0272 (14) | 0.0002 (12) | −0.0016 (11) | 0.0014 (13) |
Geometric parameters (Å, °)
| N1—C5 | 1.325 (4) | C1—H1 | 0.9300 |
| N1—C1 | 1.334 (5) | C2—C3 | 1.391 (4) |
| N1—H1A | 0.8600 | C2—H2 | 0.9300 |
| N2—C6 | 1.335 (4) | C3—C4 | 1.377 (4) |
| N2—N3 | 1.337 (4) | C3—C6 | 1.453 (4) |
| N3—N4 | 1.306 (4) | C4—C5 | 1.359 (4) |
| N4—N5 | 1.333 (4) | C4—H4 | 0.9300 |
| N5—C6 | 1.320 (4) | C5—H5 | 0.9300 |
| C1—C2 | 1.348 (5) | ||
| C5—N1—C1 | 121.8 (3) | C4—C3—C2 | 117.8 (3) |
| C5—N1—H1A | 119.1 | C4—C3—C6 | 118.8 (2) |
| C1—N1—H1A | 119.1 | C2—C3—C6 | 123.4 (2) |
| C6—N2—N3 | 104.1 (3) | C5—C4—C3 | 119.6 (3) |
| N4—N3—N2 | 109.6 (3) | C5—C4—H4 | 120.2 |
| N3—N4—N5 | 109.4 (2) | C3—C4—H4 | 120.2 |
| C6—N5—N4 | 104.9 (2) | N1—C5—C4 | 120.5 (3) |
| N1—C1—C2 | 119.6 (3) | N1—C5—H5 | 119.7 |
| N1—C1—H1 | 120.2 | C4—C5—H5 | 119.7 |
| C2—C1—H1 | 120.2 | N5—C6—N2 | 111.8 (3) |
| C1—C2—C3 | 120.5 (3) | N5—C6—C3 | 122.8 (2) |
| C1—C2—H2 | 119.7 | N2—C6—C3 | 125.4 (3) |
| C3—C2—H2 | 119.7 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1A···N2i | 0.86 | 1.89 | 2.745 (4) | 176 |
| N1—H1A···N3i | 0.86 | 2.52 | 3.306 (4) | 152 |
| C1—H1···N5ii | 0.93 | 2.46 | 3.308 (4) | 152 |
| C5—H5···N4iii | 0.93 | 2.38 | 3.168 (4) | 142 |
Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) x, y+1, z; (iii) x+1/2, −y−1/2, z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5093).
References
- Fu, D.-W., Ge, J.-Z., Dai, J., Ye, H.-Y. & Qu, Z.-R. (2009). Inorg. Chem. Commun. 12, 994–997.
- Fu, D.-W., Song, Y.-M., Wang, G.-X., Ye, Q., Xiong, R.-G., Akutagawa, T., Nakamura, T., Chan, P. W. H. & Huang, S.-P.-D. (2007). J. Am. Chem. Soc. 129, 5346–5347. [DOI] [PubMed]
- Fu, D.-W. & Xiong, R.-G. (2008). Dalton Trans. pp. 3946–3948. [DOI] [PubMed]
- Fu, D.-W., Zhang, W. & Xiong, R.-G. (2008). Cryst. Growth Des. 8, 3461–3464.
- Rigaku (2005). CrystalClear Rigaku Corporation, Tokyo, Japan.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Zhao, H., Qu, Z.-R., Ye, H.-Y. & Xiong, R.-G. (2008). Chem. Soc. Rev. 37, 84–100. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050257/xu5093sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050257/xu5093Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

