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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2010 Dec 8;67(Pt 1):o43. doi: 10.1107/S1600536810050257

5-(Pyridinium-4-yl)-1H-1,2,3,4-tetra­zol-1-ide

Qian Xu a,*, Jie Xu a
PMCID: PMC3050385  PMID: 21522752

Abstract

In the title zwitterionic mol­ecule, C6H5N5, the tetra­zole and pyridine rings are nearly coplanar, making a dihedral angle of 2.08 (1)°. In the crystal, mol­ecules are connected by classical N—H⋯N and weak C—H⋯N hydrogen bonds.

Related literature

For applications of tetra­zole derivatives, see: Zhao et al. (2008); Fu et al. (2008, 2009). For the crystal structures and properties of related compounds, see: Fu et al. (2007, 2009); Fu & Xiong (2008).graphic file with name e-67-00o43-scheme1.jpg

Experimental

Crystal data

  • C6H5N5

  • M r = 147.15

  • Monoclinic, Inline graphic

  • a = 7.0508 (14) Å

  • b = 7.4007 (15) Å

  • c = 11.926 (2) Å

  • β = 96.56 (3)°

  • V = 618.2 (2) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.11 mm−1

  • T = 298 K

  • 0.30 × 0.20 × 0.15 mm

Data collection

  • Rigaku Mercury2 diffractometer

  • 3122 measured reflections

  • 719 independent reflections

  • 633 reflections with I > 2σ(I)

  • R int = 0.039

Refinement

  • R[F 2 > 2σ(F 2)] = 0.040

  • wR(F 2) = 0.096

  • S = 1.13

  • 719 reflections

  • 100 parameters

  • 2 restraints

  • H-atom parameters constrained

  • Δρmax = 0.23 e Å−3

  • Δρmin = −0.21 e Å−3

Data collection: CrystalClear (Rigaku, 2005); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050257/xu5093sup1.cif

e-67-00o43-sup1.cif (12.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050257/xu5093Isup2.hkl

e-67-00o43-Isup2.hkl (35.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1A⋯N2i 0.86 1.89 2.745 (4) 176
N1—H1A⋯N3i 0.86 2.52 3.306 (4) 152
C1—H1⋯N5ii 0.93 2.46 3.308 (4) 152
C5—H5⋯N4iii 0.93 2.38 3.168 (4) 142

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

This work was supported by a start-up grant from Southeast University, China.

supplementary crystallographic information

Comment

Tetrazole compounds attracted more attention as phase transition dielectric materials for its application in micro-electronics, memory storage. With the purpose of obtaining phase transition crystals of tetrazole compound, a series of new materials have been elaborated with this organic molecule (Zhao et al., 2008; Fu et al., 2008; Fu et al., 2007; Fu & Xiong 2008). We report here the crystal structure of the title compound, 5-(pyridinium-4-yl)tetrazol-1-ide.

The dielectric constant of title compound as a function of temperature indicates that the permittivity is basically temperature-independent, suggesting that this compound should be not a real ferroelectrics or there may be no distinct phase transition occurred within the measured temperature range. Similarly, below the melting point (413K) of the compound, the dielectric constant as a function of temperature also goes smoothly, and there is no dielectric anomaly observed (dielectric constant equaling to 6.1 to 7.9).

In the title compound (Fig.1), the pyridine N atom is protonated, thus indicating a positive charge in the pyridine N atom. And the tetrazole ring was showing a negative charge to make the charge balance. The tetrazole and pyridine rings are twisted from each other by a dihedral angle of 2.08 (1)°. The geometric parameters of the tetrazole rings are comparable to those in related molecules (Fu et al., 2009).

In the crystal structure the molecules are connected by classic N—H···N and weak C—H···N hydrogen bonds (Table 1).

Experimental

5-(Pyridinium-4-yl)tetrazol-1-ide was obtained commercially, and the single crystals were obtained from an ethanol solution.

Refinement

H atoms attached to N atoms were located in a difference Fourier map, and refined in riding mode with N–H = 0.86 Å and Uiso(H) = 1.2Ueq(N). Other H atoms were fixed geometrically and treated as riding with C–H = 0.93 Å and Uiso(H) = 1.2Ueq(C). As no significant anomalous scattering, Friedel pairs were merged.

Figures

Fig. 1.

Fig. 1.

A view of the title compound with the atomic numbering scheme. Displacement ellipsoids were drawn at the 30% probability level.

Crystal data

C6H5N5 F(000) = 304
Mr = 147.15 Dx = 1.581 Mg m3
Monoclinic, Cc Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2yc Cell parameters from 1425 reflections
a = 7.0508 (14) Å θ = 3.4–24.5°
b = 7.4007 (15) Å µ = 0.11 mm1
c = 11.926 (2) Å T = 298 K
β = 96.56 (3)° Block, colorless
V = 618.2 (2) Å3 0.30 × 0.20 × 0.15 mm
Z = 4

Data collection

Rigaku Mercury2 diffractometer 633 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.039
graphite θmax = 27.5°, θmin = 3.4°
Detector resolution: 13.6612 pixels mm-1 h = −9→9
CCD profile fitting scans k = −9→9
3122 measured reflections l = −15→15
719 independent reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096 H-atom parameters constrained
S = 1.13 w = 1/[σ2(Fo2) + (0.056P)2] where P = (Fo2 + 2Fc2)/3
719 reflections (Δ/σ)max < 0.001
100 parameters Δρmax = 0.23 e Å3
2 restraints Δρmin = −0.21 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 1.0961 (4) 0.3035 (4) 0.4442 (2) 0.0382 (6)
H1A 1.1462 0.3791 0.4937 0.046*
N2 0.7525 (4) −0.0341 (4) 0.1099 (2) 0.0375 (6)
N3 0.7094 (4) −0.1968 (3) 0.0653 (2) 0.0443 (7)
N4 0.7884 (4) −0.3224 (3) 0.1321 (2) 0.0444 (8)
N5 0.8864 (3) −0.2457 (4) 0.2218 (2) 0.0395 (7)
C1 0.9963 (5) 0.3659 (4) 0.3504 (3) 0.0397 (9)
H1 0.9805 0.4896 0.3394 0.048*
C2 0.9185 (4) 0.2487 (4) 0.2718 (3) 0.0368 (7)
H2 0.8496 0.2920 0.2062 0.044*
C3 0.9406 (4) 0.0634 (4) 0.2879 (2) 0.0290 (6)
C4 1.0442 (4) 0.0050 (4) 0.3861 (2) 0.0372 (8)
H4 1.0622 −0.1179 0.3996 0.045*
C5 1.1202 (4) 0.1280 (4) 0.4632 (3) 0.0391 (7)
H5 1.1896 0.0888 0.5298 0.047*
C6 0.8605 (4) −0.0704 (4) 0.2067 (2) 0.0305 (7)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0486 (14) 0.0342 (16) 0.0299 (14) −0.0035 (13) −0.0037 (10) −0.0059 (13)
N2 0.0465 (15) 0.0288 (12) 0.0353 (13) 0.0003 (11) −0.0040 (10) 0.0010 (11)
N3 0.0595 (17) 0.0348 (13) 0.0359 (13) −0.0060 (15) −0.0060 (11) −0.0082 (14)
N4 0.062 (2) 0.0293 (14) 0.0404 (19) −0.0004 (13) −0.0010 (15) −0.0045 (12)
N5 0.0533 (16) 0.0251 (13) 0.0377 (16) 0.0014 (11) −0.0051 (13) −0.0026 (11)
C1 0.0455 (17) 0.029 (2) 0.0431 (16) 0.0041 (15) 0.0005 (13) 0.0020 (15)
C2 0.0422 (17) 0.0311 (16) 0.0346 (16) 0.0031 (13) −0.0059 (12) 0.0052 (13)
C3 0.0355 (14) 0.0240 (15) 0.0264 (13) 0.0001 (12) −0.0007 (11) −0.0009 (11)
C4 0.0514 (19) 0.0257 (18) 0.0319 (15) 0.0008 (12) −0.0060 (12) −0.0004 (13)
C5 0.0512 (18) 0.0331 (16) 0.0304 (14) 0.0035 (14) −0.0069 (13) −0.0014 (13)
C6 0.0369 (16) 0.0263 (15) 0.0272 (14) 0.0002 (12) −0.0016 (11) 0.0014 (13)

Geometric parameters (Å, °)

N1—C5 1.325 (4) C1—H1 0.9300
N1—C1 1.334 (5) C2—C3 1.391 (4)
N1—H1A 0.8600 C2—H2 0.9300
N2—C6 1.335 (4) C3—C4 1.377 (4)
N2—N3 1.337 (4) C3—C6 1.453 (4)
N3—N4 1.306 (4) C4—C5 1.359 (4)
N4—N5 1.333 (4) C4—H4 0.9300
N5—C6 1.320 (4) C5—H5 0.9300
C1—C2 1.348 (5)
C5—N1—C1 121.8 (3) C4—C3—C2 117.8 (3)
C5—N1—H1A 119.1 C4—C3—C6 118.8 (2)
C1—N1—H1A 119.1 C2—C3—C6 123.4 (2)
C6—N2—N3 104.1 (3) C5—C4—C3 119.6 (3)
N4—N3—N2 109.6 (3) C5—C4—H4 120.2
N3—N4—N5 109.4 (2) C3—C4—H4 120.2
C6—N5—N4 104.9 (2) N1—C5—C4 120.5 (3)
N1—C1—C2 119.6 (3) N1—C5—H5 119.7
N1—C1—H1 120.2 C4—C5—H5 119.7
C2—C1—H1 120.2 N5—C6—N2 111.8 (3)
C1—C2—C3 120.5 (3) N5—C6—C3 122.8 (2)
C1—C2—H2 119.7 N2—C6—C3 125.4 (3)
C3—C2—H2 119.7

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1A···N2i 0.86 1.89 2.745 (4) 176
N1—H1A···N3i 0.86 2.52 3.306 (4) 152
C1—H1···N5ii 0.93 2.46 3.308 (4) 152
C5—H5···N4iii 0.93 2.38 3.168 (4) 142

Symmetry codes: (i) x+1/2, −y+1/2, z+1/2; (ii) x, y+1, z; (iii) x+1/2, −y−1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5093).

References

  1. Fu, D.-W., Ge, J.-Z., Dai, J., Ye, H.-Y. & Qu, Z.-R. (2009). Inorg. Chem. Commun. 12, 994–997.
  2. Fu, D.-W., Song, Y.-M., Wang, G.-X., Ye, Q., Xiong, R.-G., Akutagawa, T., Nakamura, T., Chan, P. W. H. & Huang, S.-P.-D. (2007). J. Am. Chem. Soc. 129, 5346–5347. [DOI] [PubMed]
  3. Fu, D.-W. & Xiong, R.-G. (2008). Dalton Trans. pp. 3946–3948. [DOI] [PubMed]
  4. Fu, D.-W., Zhang, W. & Xiong, R.-G. (2008). Cryst. Growth Des. 8, 3461–3464.
  5. Rigaku (2005). CrystalClear Rigaku Corporation, Tokyo, Japan.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  7. Zhao, H., Qu, Z.-R., Ye, H.-Y. & Xiong, R.-G. (2008). Chem. Soc. Rev. 37, 84–100. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050257/xu5093sup1.cif

e-67-00o43-sup1.cif (12.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050257/xu5093Isup2.hkl

e-67-00o43-Isup2.hkl (35.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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