Abstract
The whole molecule of the title coumarin derivative, C11H10O3, is approximately planar, with a maximum deviation of 0.116 (3) Å from the least-squares plane defined by all non-H atoms. In the crystal, adjacent molecules are linked into chains along [011] via intermolecular C—H⋯O hydrogen bonds.
Related literature
For general background to and applications of the title coumarin derivative, see: Grimm & Girard (2006 ▶); Maresca et al. (2010 ▶); Parvez & Hadda (2010 ▶); Raj & Wenge (1998 ▶); Yao & Deng (2000 ▶). For related coumarin structures, see: Asad et al. (2010 ▶); Saidi et al. (2007 ▶). For bond-length data, see: Allen et al. (1987 ▶).
Experimental
Crystal data
C11H10O3
M r = 190.19
Triclinic,
a = 7.2554 (2) Å
b = 8.0880 (2) Å
c = 8.5450 (2) Å
α = 112.988 (1)°
β = 90.234 (1)°
γ = 93.873 (1)°
V = 460.31 (2) Å3
Z = 2
Mo Kα radiation
μ = 0.10 mm−1
T = 293 K
0.40 × 0.35 × 0.06 mm
Data collection
Bruker SMART APEXII CCD area-detector diffractometer
Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.962, T max = 0.994
10271 measured reflections
2793 independent reflections
1675 reflections with I > 2σ(I)
R int = 0.021
Refinement
R[F 2 > 2σ(F 2)] = 0.066
wR(F 2) = 0.218
S = 1.09
2793 reflections
129 parameters
H-atom parameters constrained
Δρmax = 0.70 e Å−3
Δρmin = −0.20 e Å−3
Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810051652/is2642sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810051652/is2642Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
C8—H8A⋯O2i | 0.93 | 2.56 | 3.471 (2) | 165 |
Symmetry code: (i) .
Acknowledgments
HKF and JHG thank Universiti Sains Malaysia (USM) for a Research University Grant (No. 1001/PFIZIK/811160). Financial support from the Fok Ying Tung Education Foundation (114012) is also acknowledged.
supplementary crystallographic information
Comment
Coumarin is the mother-nuclear structure of many natural products and the importance of coumarin and its analogous compounds which exhibit useful pharmaceutical activities are well-known. Some substituted coumarin and their derivatives have been reported as food constituents, anti-oxidants, stabilizers, immunomodulatory substances, inhibitors of some enzymes, fluorescent markers in analysis, lasers, and in clinical use (Parvez & Hadda, 2010; Maresca et al., 2010; Grimm & Girard, 2006). In addition, 4-substituted coumarins have shown many pharmaceutical activities such as anti-bacterial, anti-fungal, anthelmintic, insecticidal, hypnotic and other biological activities, and most precisely 4-methyl-coumarins have been correlated to several beneficial pharmacological effects too (Yao & Deng, 2000; Raj & Wenge, 1998). In view of the importance of the coumarin derivatives, the crystal structure of the title compound is reported in this paper.
The title coumarin derivative (Fig. 1) has an approximately planar molecular structure, with the methoxy-O atom (C10) deviating -0.116 (3) Å from the least-squares plane defined by all non-hydrogen atoms. All bond lengths (Allen et al., 1987) and angles are within normal ranges and are comparable to those related coumarin structures (Asad et al., 2010; Saidi et al., 2007). In the crystal packing (Fig. 2), adjacent molecules are linked into one-dimensional chains propagating along the [011] direction via intermolecular C8—H8A···O2 hydrogen bonds.
Experimental
The title compound was obtained in the photoreaction of 4-(chloromethyl)-6-methoxy-2H-chromen-2-one in visible light. The compound was purified by flash column chromatography. Good quality single crystals suitable for X-ray analysis were obtained from slow evaporation of a 1:1 solution of acetone and petroleum ether.
Refinement
All hydrogen atoms were placed in their calculated positions, with C—H = 0.93 or 0.96 Å, and refined using a riding model, with Uiso(H) = 1.2 or 1.5Ueq(C). The rotating group model was applied to the methyl groups.
Figures
Fig. 1.
The molecular structure of the title coumarin derivative, showing the atomic numbering scheme. Displacement ellipsoids for non-hydrogen atoms are drawn at the 50 % probability level.
Fig. 2.
The crystal structure of the title compound, viewed along the a axis, showing one-dimensional chains propagating along the [011] direction. Intermolecular hydrogen bonds are shown as dashed lines.
Crystal data
C11H10O3 | Z = 2 |
Mr = 190.19 | F(000) = 200 |
Triclinic, P1 | Dx = 1.372 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.2554 (2) Å | Cell parameters from 3241 reflections |
b = 8.0880 (2) Å | θ = 2.6–30.0° |
c = 8.5450 (2) Å | µ = 0.10 mm−1 |
α = 112.988 (1)° | T = 293 K |
β = 90.234 (1)° | Plate, yellow |
γ = 93.873 (1)° | 0.40 × 0.35 × 0.06 mm |
V = 460.31 (2) Å3 |
Data collection
Bruker SMART APEXII CCD area-detector diffractometer | 2793 independent reflections |
Radiation source: fine-focus sealed tube | 1675 reflections with I > 2σ(I) |
graphite | Rint = 0.021 |
φ and ω scans | θmax = 30.6°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −10→10 |
Tmin = 0.962, Tmax = 0.994 | k = −11→11 |
10271 measured reflections | l = −11→12 |
Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.066 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.218 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0991P)2 + 0.086P] where P = (Fo2 + 2Fc2)/3 |
2793 reflections | (Δ/σ)max < 0.001 |
129 parameters | Δρmax = 0.70 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
Special details
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
O1 | 0.19469 (16) | 0.53037 (17) | 0.87871 (16) | 0.0508 (4) | |
O2 | 0.6197 (2) | 1.09931 (18) | 1.34611 (17) | 0.0638 (4) | |
O3 | 0.1468 (2) | 0.2933 (2) | 0.63843 (19) | 0.0679 (5) | |
C1 | 0.3087 (2) | 0.6718 (2) | 0.9894 (2) | 0.0417 (4) | |
C2 | 0.2327 (3) | 0.7819 (3) | 1.1396 (2) | 0.0512 (5) | |
H2A | 0.1101 | 0.7603 | 1.1617 | 0.061* | |
C3 | 0.3402 (3) | 0.9229 (3) | 1.2551 (2) | 0.0527 (5) | |
H3A | 0.2901 | 0.9974 | 1.3559 | 0.063* | |
C4 | 0.5250 (3) | 0.9555 (2) | 1.2222 (2) | 0.0472 (4) | |
C5 | 0.5999 (2) | 0.8469 (2) | 1.0726 (2) | 0.0438 (4) | |
H5A | 0.7225 | 0.8696 | 1.0510 | 0.053* | |
C6 | 0.4917 (2) | 0.7016 (2) | 0.9521 (2) | 0.0384 (4) | |
C7 | 0.5603 (2) | 0.5807 (2) | 0.7919 (2) | 0.0414 (4) | |
C8 | 0.4450 (2) | 0.4441 (2) | 0.6875 (2) | 0.0463 (4) | |
H8A | 0.4895 | 0.3663 | 0.5851 | 0.056* | |
C9 | 0.2564 (3) | 0.4127 (2) | 0.7264 (2) | 0.0475 (4) | |
C10 | 0.8119 (3) | 1.1270 (3) | 1.3272 (3) | 0.0695 (6) | |
H10C | 0.8624 | 1.2287 | 1.4242 | 0.104* | |
H10D | 0.8317 | 1.1495 | 1.2260 | 0.104* | |
H10A | 0.8718 | 1.0217 | 1.3187 | 0.104* | |
C11 | 0.7558 (3) | 0.6091 (3) | 0.7459 (3) | 0.0573 (5) | |
H11D | 0.7824 | 0.5119 | 0.6419 | 0.086* | |
H11A | 0.8387 | 0.6128 | 0.8352 | 0.086* | |
H11B | 0.7713 | 0.7209 | 0.7311 | 0.086* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0352 (6) | 0.0577 (8) | 0.0514 (8) | 0.0001 (5) | 0.0021 (5) | 0.0132 (6) |
O2 | 0.0694 (10) | 0.0531 (8) | 0.0488 (8) | 0.0036 (7) | −0.0011 (7) | −0.0017 (6) |
O3 | 0.0523 (8) | 0.0717 (9) | 0.0622 (9) | −0.0130 (7) | −0.0092 (7) | 0.0103 (8) |
C1 | 0.0368 (8) | 0.0467 (9) | 0.0413 (9) | 0.0056 (7) | 0.0016 (7) | 0.0164 (7) |
C2 | 0.0411 (9) | 0.0600 (11) | 0.0516 (11) | 0.0141 (8) | 0.0130 (8) | 0.0193 (9) |
C3 | 0.0579 (11) | 0.0553 (11) | 0.0413 (10) | 0.0187 (9) | 0.0120 (8) | 0.0125 (8) |
C4 | 0.0541 (11) | 0.0434 (9) | 0.0394 (9) | 0.0087 (8) | −0.0003 (8) | 0.0104 (7) |
C5 | 0.0400 (9) | 0.0467 (9) | 0.0416 (9) | 0.0039 (7) | 0.0031 (7) | 0.0139 (7) |
C6 | 0.0362 (8) | 0.0418 (8) | 0.0367 (8) | 0.0073 (6) | 0.0023 (6) | 0.0141 (7) |
C7 | 0.0384 (9) | 0.0457 (9) | 0.0387 (9) | 0.0068 (7) | 0.0042 (7) | 0.0145 (7) |
C8 | 0.0461 (10) | 0.0480 (9) | 0.0388 (9) | 0.0059 (7) | 0.0031 (7) | 0.0102 (7) |
C9 | 0.0429 (9) | 0.0511 (10) | 0.0440 (10) | 0.0006 (8) | −0.0033 (7) | 0.0144 (8) |
C10 | 0.0654 (14) | 0.0596 (12) | 0.0646 (14) | −0.0073 (10) | −0.0111 (11) | 0.0060 (10) |
C11 | 0.0466 (10) | 0.0633 (12) | 0.0508 (11) | 0.0045 (9) | 0.0119 (8) | 0.0100 (9) |
Geometric parameters (Å, °)
O1—C9 | 1.377 (2) | C5—H5A | 0.9300 |
O1—C1 | 1.381 (2) | C6—C7 | 1.450 (2) |
O2—C4 | 1.367 (2) | C7—C8 | 1.348 (2) |
O2—C10 | 1.417 (3) | C7—C11 | 1.500 (2) |
O3—C9 | 1.206 (2) | C8—C9 | 1.438 (3) |
C1—C2 | 1.387 (2) | C8—H8A | 0.9300 |
C1—C6 | 1.394 (2) | C10—H10C | 0.9600 |
C2—C3 | 1.370 (3) | C10—H10D | 0.9600 |
C2—H2A | 0.9300 | C10—H10A | 0.9600 |
C3—C4 | 1.400 (3) | C11—H11D | 0.9600 |
C3—H3A | 0.9300 | C11—H11A | 0.9600 |
C4—C5 | 1.376 (2) | C11—H11B | 0.9600 |
C5—C6 | 1.407 (2) | ||
C9—O1—C1 | 121.54 (14) | C8—C7—C11 | 121.52 (15) |
C4—O2—C10 | 117.77 (15) | C6—C7—C11 | 119.97 (15) |
O1—C1—C2 | 116.85 (15) | C7—C8—C9 | 123.28 (16) |
O1—C1—C6 | 121.51 (15) | C7—C8—H8A | 118.4 |
C2—C1—C6 | 121.65 (16) | C9—C8—H8A | 118.4 |
C3—C2—C1 | 119.36 (17) | O3—C9—O1 | 116.69 (17) |
C3—C2—H2A | 120.3 | O3—C9—C8 | 126.37 (18) |
C1—C2—H2A | 120.3 | O1—C9—C8 | 116.95 (15) |
C2—C3—C4 | 120.41 (16) | O2—C10—H10C | 109.5 |
C2—C3—H3A | 119.8 | O2—C10—H10D | 109.5 |
C4—C3—H3A | 119.8 | H10C—C10—H10D | 109.5 |
O2—C4—C5 | 124.24 (17) | O2—C10—H10A | 109.5 |
O2—C4—C3 | 115.58 (16) | H10C—C10—H10A | 109.5 |
C5—C4—C3 | 120.18 (17) | H10D—C10—H10A | 109.5 |
C4—C5—C6 | 120.30 (16) | C7—C11—H11D | 109.5 |
C4—C5—H5A | 119.8 | C7—C11—H11A | 109.5 |
C6—C5—H5A | 119.8 | H11D—C11—H11A | 109.5 |
C1—C6—C5 | 118.10 (15) | C7—C11—H11B | 109.5 |
C1—C6—C7 | 118.22 (15) | H11D—C11—H11B | 109.5 |
C5—C6—C7 | 123.68 (15) | H11A—C11—H11B | 109.5 |
C8—C7—C6 | 118.51 (15) | ||
C9—O1—C1—C2 | −179.81 (14) | C2—C1—C6—C7 | −179.76 (15) |
C9—O1—C1—C6 | −0.2 (3) | C4—C5—C6—C1 | −0.1 (3) |
O1—C1—C2—C3 | 179.14 (15) | C4—C5—C6—C7 | −179.79 (14) |
C6—C1—C2—C3 | −0.4 (3) | C1—C6—C7—C8 | −0.8 (2) |
C1—C2—C3—C4 | −0.1 (3) | C5—C6—C7—C8 | 178.89 (15) |
C10—O2—C4—C5 | −6.8 (3) | C1—C6—C7—C11 | 179.31 (16) |
C10—O2—C4—C3 | 173.65 (17) | C5—C6—C7—C11 | −1.0 (3) |
C2—C3—C4—O2 | −179.84 (16) | C6—C7—C8—C9 | 0.4 (3) |
C2—C3—C4—C5 | 0.6 (3) | C11—C7—C8—C9 | −179.67 (17) |
O2—C4—C5—C6 | −179.97 (15) | C1—O1—C9—O3 | 179.91 (15) |
C3—C4—C5—C6 | −0.4 (3) | C1—O1—C9—C8 | −0.2 (3) |
O1—C1—C6—C5 | −178.98 (14) | C7—C8—C9—O3 | 179.99 (18) |
C2—C1—C6—C5 | 0.6 (3) | C7—C8—C9—O1 | 0.1 (3) |
O1—C1—C6—C7 | 0.7 (2) |
Hydrogen-bond geometry (Å, °)
D—H···A | D—H | H···A | D···A | D—H···A |
C8—H8A···O2i | 0.93 | 2.56 | 3.471 (2) | 165 |
Symmetry codes: (i) x, y−1, z−1.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: IS2642).
References
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- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
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- Yao, M.-L. & Deng, M.-Z. (2000). Heteroat. Chem. 11, 380–382.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810051652/is2642sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536810051652/is2642Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report