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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jan 22;67(Pt 2):o452. doi: 10.1107/S1600536811001838

1-(4-Carb­oxy­phen­yl)-1H-imidazol-3-ium chloride dihydrate

Zhi-Peng Yu a, Wen-Qian Geng a, Lin Kong a, Hong-Ping Zhou a,*
PMCID: PMC3051584  PMID: 21523114

Abstract

In the crystal structure of the title compound, C10H9N2O2 +·Cl·2H2O, the components are linked by O—H⋯O, N—H⋯O, O—H⋯Cl and N—H⋯Cl hydrogen bonds. In the cation, the imidazole ring is oriented at a dihedral angle of 13.67 (17)° with respect to the benzene ring. In the crystal, π–π stacking occurs between nearly parallel benzene rings, which are oriented at a dihedral angle of 3.4 (1)°, the centroid–centroid distance being 3.798 (3) Å.

Related literature

For related imidazole-containing compounds, see: Nyamori & Bala (2008); Nie et al. (2009).graphic file with name e-67-0o452-scheme1.jpg

Experimental

Crystal data

  • C10H9N2O2 +·Cl·2H2O

  • M r = 260.67

  • Orthorhombic, Inline graphic

  • a = 7.427 (5) Å

  • b = 17.708 (5) Å

  • c = 18.748 (5) Å

  • V = 2465.7 (19) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.32 mm−1

  • T = 298 K

  • 0.30 × 0.20 × 0.20 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2001) T min = 0.912, T max = 0.940

  • 14555 measured reflections

  • 2165 independent reflections

  • 1515 reflections with I > 2σ(I)

  • R int = 0.033

Refinement

  • R[F 2 > 2σ(F 2)] = 0.040

  • wR(F 2) = 0.146

  • S = 0.96

  • 2165 reflections

  • 175 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.20 e Å−3

  • Δρmin = −0.32 e Å−3

Data collection: SMART (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811001838/xu5134sup1.cif

e-67-0o452-sup1.cif (16.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001838/xu5134Isup2.hkl

e-67-0o452-Isup2.hkl (106.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N2—H2⋯O1i 0.86 2.21 2.822 (3) 128
N2—H2⋯Cl1ii 0.86 2.62 3.231 (2) 129
O2—H7⋯O4iii 0.82 1.77 2.594 (3) 177
O3—H10⋯Cl1iv 0.83 (4) 2.36 (4) 3.150 (3) 159 (3)
O3—H11⋯Cl1v 0.94 (5) 2.22 (5) 3.141 (3) 168 (3)
O4—H12⋯O3 0.76 (4) 1.99 (4) 2.718 (4) 162 (4)
O4—H13⋯Cl1 0.86 (4) 2.22 (4) 3.066 (4) 172 (3)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic.

Acknowledgments

This work was supported by grants from the National Natural Science Foundation of China (21071001), the Education Committee of Anhui Province (KJ2009A52, KJ2010A30), the Team for Scientific Innovation Foundation of Anhui Province (2006 K J007TD), the Ministry of Education Person with Ability Foundation of Anhui University, the Science and Technological Fund of Anhui Province for Outstanding Youth (10040606Y22), and the 211 Project of Anhui University.

supplementary crystallographic information

Comment

Imidazol - based materials had been investigated for their electrical and optical properties. Beside, the introduction about the structure of its complex has been reported (Nie et al., 2009). The title molecule that we has designed and synthesized is a good intermediate and penetratingly investigated. In the title molecule(I) (Fig.1), the bond lengths and angles show normal values. The imidazole ring is twisted out of the plane of the center benzene ring at a dihedral angle of 13.67 (17)°. In the title molecule (I) (Fig.2), the neighboring molecules connect through O—H···O, N—H···O, O—H···Cl and N—H···Cl hydrogen bonds (Table 1). π–π stacking is observed between nearly parallel benzene rings, the centroids distance being 3.798 (3) Å.

Experimental

A 150 ml round-bottom flask was charged with a magnetic stirrer and a reflux condenser, iminazole (44 mmol), K2CO3 (6.00 g, 43 mmol), 30 ml DMSO and a little Aliquat 336 were added. 4-Fluorobenzaldehyde (4.5 ml, 42 mmol) was added dropwise to the mixture at 363 K and stirred for 15 min. Then the reaction mixture was refluxed for 24 h at 353 K, cooled to room temperature, poured into 150 ml ice-water and filtered. The primrose yellow crude product was obtained, washed with distilled water, and dried in vacuo at room temperature, then purified by recrystallization with ethyl acetate to give the desired analytical pure intermediate products. Intermediate product (12.5 mmol) and 15 ml 20% (wt) NaOH (aq) were added to a round-bottom flask equipped with a magnetic stirrer and a reflux condenser at 333 K for 30 min. Then AgNO3 (4.00 g, 24 mmol) was added to the mixture group by group. The reaction mixture was refluxed for 24 h at 333 K, cooled to room temperature and filtered. Excessive HCl (1 M) was added to the filtrate and adjust pH to 2, a great deal of sediments were obtained and then filtered. The crude product was recrystallized from ethanol-water solution.

Refinement

Water H atoms were located in a difference Fourier map and refined isotropically. Other H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms, with O—H = 0.82 and C—H = 0.93 Å, Uiso(H) = 1.5Ueq(O) and 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title molecule(I) showing 30% probability displacement ellipsoids.

Fig. 2.

Fig. 2.

The H-bond and weak π–π interaction diagram of the title molecule(I).

Crystal data

C10H9N2O2+·Cl·2H2O F(000) = 1088
Mr = 260.67 Dx = 1.404 Mg m3
Orthorhombic, Pbca Mo Kα radiation, λ = 0.71069 Å
Hall symbol: -P 2ac 2ab Cell parameters from 3445 reflections
a = 7.427 (5) Å θ = 2.3–21.7°
b = 17.708 (5) Å µ = 0.32 mm1
c = 18.748 (5) Å T = 298 K
V = 2465.7 (19) Å3 Block, yellow
Z = 8 0.30 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer 2165 independent reflections
Radiation source: fine-focus sealed tube 1515 reflections with I > 2σ(I)
graphite Rint = 0.033
φ and ω scans θmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2001) h = −8→7
Tmin = 0.912, Tmax = 0.940 k = −21→16
14555 measured reflections l = −17→22

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146 H atoms treated by a mixture of independent and constrained refinement
S = 0.96 w = 1/[σ2(Fo2) + (0.1P)2 + 0.3P] where P = (Fo2 + 2Fc2)/3
2165 reflections (Δ/σ)max < 0.001
175 parameters Δρmax = 0.20 e Å3
0 restraints Δρmin = −0.32 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.99581 (9) 0.35765 (4) 0.14987 (4) 0.0637 (3)
O3 0.4071 (3) 0.34344 (12) 0.18640 (13) 0.0661 (6)
N1 0.6552 (3) 0.13527 (10) 0.12446 (10) 0.0467 (5)
C4 0.6689 (3) 0.11991 (13) 0.19963 (12) 0.0423 (6)
O4 0.6325 (4) 0.41591 (12) 0.09501 (10) 0.0628 (6)
O2 0.6026 (3) 0.11860 (11) 0.46109 (9) 0.0678 (6)
H7 0.6154 0.1068 0.5031 0.102*
O1 0.7751 (3) 0.01818 (11) 0.44419 (10) 0.0717 (6)
C10 0.6934 (3) 0.07130 (14) 0.42051 (13) 0.0484 (6)
C6 0.7468 (3) 0.03739 (12) 0.29454 (12) 0.0473 (6)
H6 0.7936 −0.0083 0.3105 0.057*
C7 0.6859 (3) 0.09017 (12) 0.34359 (12) 0.0436 (6)
C5 0.7388 (3) 0.05180 (13) 0.22262 (12) 0.0481 (6)
H5 0.7798 0.0163 0.1899 0.058*
C8 0.6198 (3) 0.15821 (13) 0.31931 (13) 0.0483 (6)
H8 0.5805 0.1941 0.3520 0.058*
C9 0.6110 (3) 0.17379 (12) 0.24755 (13) 0.0469 (6)
H9 0.5667 0.2199 0.2316 0.056*
N2 0.6424 (3) 0.12032 (12) 0.01107 (11) 0.0572 (6)
H2 0.6454 0.0992 −0.0302 0.069*
C3 0.6691 (3) 0.08596 (14) 0.07173 (13) 0.0532 (7)
H3 0.6941 0.0348 0.0771 0.064*
C2 0.6095 (6) 0.19392 (17) 0.02329 (16) 0.0848 (11)
C1 0.6184 (6) 0.20415 (17) 0.09362 (16) 0.0934 (12)
H1 0.6026 0.2496 0.1176 0.112*
H12 0.554 (5) 0.402 (2) 0.117 (2) 0.079 (13)*
H13 0.734 (5) 0.3965 (18) 0.1065 (16) 0.076 (11)*
H11 0.283 (6) 0.341 (2) 0.179 (2) 0.118 (15)*
H10 0.421 (6) 0.359 (2) 0.228 (2) 0.112 (15)*
H4 0.597 (5) 0.230 (2) −0.017 (2) 0.112 (12)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0640 (5) 0.0782 (5) 0.0489 (5) −0.0013 (3) 0.0008 (3) −0.0005 (3)
O3 0.0661 (15) 0.0778 (14) 0.0545 (14) 0.0097 (11) 0.0031 (11) −0.0011 (11)
N1 0.0583 (12) 0.0435 (11) 0.0383 (11) −0.0004 (9) −0.0028 (9) −0.0008 (9)
C4 0.0480 (13) 0.0421 (12) 0.0370 (13) −0.0030 (10) −0.0038 (10) −0.0021 (10)
O4 0.0735 (15) 0.0696 (13) 0.0452 (12) 0.0004 (13) 0.0000 (12) 0.0038 (9)
O2 0.0905 (15) 0.0737 (12) 0.0393 (10) 0.0220 (11) 0.0038 (10) 0.0017 (10)
O1 0.0959 (15) 0.0695 (12) 0.0497 (11) 0.0272 (12) −0.0011 (10) 0.0107 (9)
C10 0.0514 (14) 0.0493 (13) 0.0444 (14) 0.0007 (12) −0.0044 (12) −0.0011 (12)
C6 0.0571 (14) 0.0351 (11) 0.0497 (14) 0.0043 (11) −0.0047 (12) 0.0016 (11)
C7 0.0460 (13) 0.0431 (13) 0.0416 (13) −0.0026 (10) −0.0050 (10) 0.0009 (10)
C5 0.0623 (15) 0.0406 (13) 0.0413 (13) 0.0032 (11) 0.0000 (12) −0.0057 (11)
C8 0.0602 (16) 0.0449 (13) 0.0397 (14) 0.0045 (11) −0.0018 (11) −0.0059 (10)
C9 0.0583 (15) 0.0374 (11) 0.0450 (14) 0.0064 (11) −0.0015 (11) 0.0012 (11)
N2 0.0716 (15) 0.0631 (14) 0.0369 (12) −0.0002 (11) −0.0019 (10) −0.0056 (10)
C3 0.0677 (17) 0.0500 (14) 0.0420 (14) 0.0050 (12) −0.0007 (12) −0.0075 (12)
C2 0.152 (3) 0.0592 (19) 0.0428 (17) 0.011 (2) −0.0073 (19) 0.0062 (14)
C1 0.186 (4) 0.0480 (16) 0.0467 (17) 0.017 (2) −0.010 (2) 0.0026 (13)

Geometric parameters (Å, °)

O3—H11 0.94 (5) C6—C7 1.387 (3)
O3—H10 0.83 (4) C6—H6 0.9300
N1—C3 1.323 (3) C7—C8 1.379 (3)
N1—C1 1.377 (3) C5—H5 0.9300
N1—C4 1.439 (3) C8—C9 1.375 (3)
C4—C9 1.379 (3) C8—H8 0.9300
C4—C5 1.382 (3) C9—H9 0.9300
O4—H12 0.76 (4) N2—C3 1.305 (3)
O4—H13 0.86 (3) N2—C2 1.346 (4)
O2—C10 1.317 (3) N2—H2 0.8600
O2—H7 0.8200 C3—H3 0.9300
O1—C10 1.204 (3) C2—C1 1.333 (4)
C10—C7 1.481 (3) C2—H4 0.99 (4)
C6—C5 1.373 (3) C1—H1 0.9300
H11—O3—H10 106 (4) C4—C5—H5 120.5
C3—N1—C1 106.6 (2) C9—C8—C7 121.0 (2)
C3—N1—C4 127.0 (2) C9—C8—H8 119.5
C1—N1—C4 126.3 (2) C7—C8—H8 119.5
C9—C4—C5 121.2 (2) C8—C9—C4 118.9 (2)
C9—C4—N1 119.0 (2) C8—C9—H9 120.5
C5—C4—N1 119.8 (2) C4—C9—H9 120.5
H12—O4—H13 115 (3) C3—N2—C2 109.3 (2)
C10—O2—H7 109.5 C3—N2—H2 125.3
O1—C10—O2 122.8 (2) C2—N2—H2 125.3
O1—C10—C7 123.6 (2) N2—C3—N1 109.4 (2)
O2—C10—C7 113.6 (2) N2—C3—H3 125.3
C5—C6—C7 120.8 (2) N1—C3—H3 125.3
C5—C6—H6 119.6 C1—C2—N2 106.9 (3)
C7—C6—H6 119.6 C1—C2—H4 132 (2)
C8—C7—C6 119.1 (2) N2—C2—H4 121 (2)
C8—C7—C10 122.1 (2) C2—C1—N1 107.8 (3)
C6—C7—C10 118.8 (2) C2—C1—H1 126.1
C6—C5—C4 119.0 (2) N1—C1—H1 126.1
C6—C5—H5 120.5
C3—N1—C4—C9 −165.3 (2) C6—C7—C8—C9 1.0 (4)
C1—N1—C4—C9 12.2 (4) C10—C7—C8—C9 −178.7 (2)
C3—N1—C4—C5 14.4 (4) C7—C8—C9—C4 0.3 (4)
C1—N1—C4—C5 −168.1 (3) C5—C4—C9—C8 −1.5 (4)
C5—C6—C7—C8 −1.1 (4) N1—C4—C9—C8 178.3 (2)
C5—C6—C7—C10 178.6 (2) C2—N2—C3—N1 −0.2 (3)
O1—C10—C7—C8 −167.9 (3) C1—N1—C3—N2 −0.3 (3)
O2—C10—C7—C8 11.7 (3) C4—N1—C3—N2 177.6 (2)
O1—C10—C7—C6 12.4 (4) C3—N2—C2—C1 0.6 (4)
O2—C10—C7—C6 −168.0 (2) N2—C2—C1—N1 −0.7 (4)
C7—C6—C5—C4 0.0 (4) C3—N1—C1—C2 0.6 (4)
C9—C4—C5—C6 1.4 (4) C4—N1—C1—C2 −177.3 (3)
N1—C4—C5—C6 −178.4 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N2—H2···O1i 0.86 2.21 2.822 (3) 128
N2—H2···Cl1ii 0.86 2.62 3.231 (2) 129
O2—H7···O4iii 0.82 1.77 2.594 (3) 177
O3—H10···Cl1iv 0.83 (4) 2.36 (4) 3.150 (3) 159 (3)
O3—H11···Cl1v 0.94 (5) 2.22 (5) 3.141 (3) 168 (3)
O4—H12···O3 0.76 (4) 1.99 (4) 2.718 (4) 162 (4)
O4—H13···Cl1 0.86 (4) 2.22 (4) 3.066 (4) 172 (3)

Symmetry codes: (i) −x+3/2, −y, z−1/2; (ii) x−1/2, −y+1/2, −z; (iii) x, −y+1/2, z+1/2; (iv) x−1/2, y, −z+1/2; (v) x−1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5134).

References

  1. Bruker (2001). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (2007). SAMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Nie, J.-J., Li, J.-H. & Xu, D.-J. (2009). Acta Cryst. E65, m822–m823. [DOI] [PMC free article] [PubMed]
  4. Nyamori, V. O. & Bala, M. D. (2008). Acta Cryst. E64, m1451. [DOI] [PMC free article] [PubMed]
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811001838/xu5134sup1.cif

e-67-0o452-sup1.cif (16.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001838/xu5134Isup2.hkl

e-67-0o452-Isup2.hkl (106.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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