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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jan 8;67(Pt 2):o239. doi: 10.1107/S1600536810052955

(R)-(+)-Dimeth­yl[4-oxido-2-oxo-1-(1-phenyl­eth­yl)-1,2,5,6-tetra­hydro­pyridin-3-yl]sulfonium

Paola G Gordillo a, Joel L Terán a, Jorge R Juárez a, Angel Mendoza a,*
PMCID: PMC3051604  PMID: 21522933

Abstract

In the title zwitterionic compound, C15H19NO2S, the six-membered heterocycle adopts a sofa conformation. The negative charge is delocalized along the carbonyl and enolate system on the ring and the positive charge is localized on the S atom. Two inter­molecular C—H⋯O inter­actions help to establish the packing.

Related literature

For background to the synthesis of chiral non-racemic zwitterionic 4-alk­oxy-3-sulfonium ylide pyridine-2-ones, see: Zang et al. (2008); Kappe et al. (1983); Palillero et al. (2009). For the biological activity of related structures, see: Basco et al. (1994); Koruzňjak et al., 2003). For ring conformation analysis, see: Cremer & Pople (1975).graphic file with name e-67-0o239-scheme1.jpg

Experimental

Crystal data

  • C15H19NO2S

  • M r = 277.37

  • Orthorhombic, Inline graphic

  • a = 5.9860 (17) Å

  • b = 7.4050 (14) Å

  • c = 31.589 (5) Å

  • V = 1400.2 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.23 mm−1

  • T = 293 K

  • 0.5 × 0.4 × 0.2 mm

Data collection

  • Siemens P4 diffractometer

  • Absorption correction: ψ scan (North et al., 1968) T min = 0.728, T max = 0.846

  • 3016 measured reflections

  • 2683 independent reflections

  • 1928 reflections with I > 2σ(I)

  • R int = 0.045

  • 3 standard reflections every 97 reflections intensity decay: 3%

Refinement

  • R[F 2 > 2σ(F 2)] = 0.061

  • wR(F 2) = 0.153

  • S = 1.03

  • 2683 reflections

  • 172 parameters

  • H-atom parameters constrained

  • Δρmax = 0.63 e Å−3

  • Δρmin = −0.39 e Å−3

  • Absolute structure: Flack (1983), 532 Friedel pairs

  • Flack parameter: −0.01 (16)

Data collection: XSCANS (Siemens, 1994); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810052955/bt5438sup1.cif

e-67-0o239-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052955/bt5438Isup2.hkl

e-67-0o239-Isup2.hkl (129.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C7—H7C⋯O2i 0.96 2.36 3.315 (6) 172
C15—H15A⋯O1ii 0.96 2.38 3.167 (5) 138

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

We are grateful to CONACyT (Project 83185) for financial support. PGG also thanks CONACyT for a scholarship (169011). Special thanks go to Dr Marcos Flores (USAI-FQ-UNAM) for useful comments.

supplementary crystallographic information

Comment

The synthesis of chiral non racemic zwitterionic 4-alkoxy-3-sulfonium ylide pyridine-2-ones is an original area of interest in organic chemistry (Zang et al., 2008; Kappe et al., 1983) because they are useful for the synthesis of piperidine-2,4-dione and pyridine-2-one (Palillero et al., 2009) compounds and because of their interesting biological properties (Basco et al., 1994; Koruzňjak et al., 2003).

The title compound I, features a zwitterionic molecule. The chiral centre shows an R configuration with [α]D= +70.5. The six member ring N1/C1/C2/C3/C4/C5 shows an sofa conformation with puckering parameters (Cremer & Pople, 1975) Q = 0.465 (4) Å, θ2 = 119.7 (5)°, φ2 = 103.2 (6)°, q2 = 0.404 (4) Å and q3 = -0.231 (4) Å. The bond distances of N1—C1, N1—C5, C5—C4 and C4—C3 show typical values, so that C2—C3 distance shows a single double bond (1.415 (5) Å), while C1—C2 (1.455 (5) Å) distance is shorter than common sp3—sp3 bonds, furthermore C3—O2 (1.244 (5) Å) and C1—O1 (1.250 (4) Å) distances are longer than related enolates and amide groups respectively these values suggest that negative charge is delocalized over O1/C1/C2/C3/O2 system and in the sulfonium group is located the positive charge in the zwitterion. Crystal packing is stabilized by two weak intermolecular C —H···O interactions.

Experimental

The title compound, was obtained by an intramolecular cyclization reaction of (1'R)-(+)-{[(2-methoxycarbonyl-ethyl)-(1'-phenyl-ethyl)-carbamoyl]-methyl}-dimethyl-sulfonium; bromide (1 mmol), which was dissolved in CH3CN (10 mL), treated with KOH (1.2 mmol) and stirred for two hours at room temperature. The resulting mixture was concentrated in vacuum and dissolved in ethyl acetate, filtered and concentrated giving the desired compound in 95%. Crystals were obtained from an ethyl acetate/diethylether solution; m.p. 139–140°C, [α]D= +70.5 (c 1.1, MeOH). IR (KBr) 1656 cm-1. 1H NMR (400 MHz, CDCl3) δ (p.p.m., J Hz): 1.51 (d, J = 7.2, 3H, Me), 2.32 (m, 2H), 2.90 (m, 1H), 2.98 (s, 3H, SMe), 3.00 (s, 3H, SMe), 3.16 (m, 1H), 5.94 (q, J =7.2, 1H), 7.27–7.40 (m, 5H). 13C NMR (100 MHz, CDCl3) δ p.p.m. 15.4, 26.0, 26.3, 36.3, 37.6, 48.9, 74.3, 126.5–141.0, 166.2, 187.5. HRMS (FAB): Calcd for C15H19NO2S: 277.1124. Found: 277.1103.

Refinement

H atoms linked to C atoms were placed in geometrical idealized positions and refined as riding on their parent atoms, with C—H = 0.93–0.98 Å and with Uiso(H) = 1.2 Ueq(C) or Ueq(H) = 1.5 Ueq(C) for methyl groups.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with 50% probability displacement ellipsoids for non-H atoms.

Crystal data

C15H19NO2S F(000) = 592
Mr = 277.37 Dx = 1.316 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 46 reflections
a = 5.9860 (17) Å θ = 21.3–35.1°
b = 7.4050 (14) Å µ = 0.23 mm1
c = 31.589 (5) Å T = 293 K
V = 1400.2 (5) Å3 Prism, colorless
Z = 4 0.5 × 0.4 × 0.2 mm

Data collection

Siemens P4 diffractometer Rint = 0.045
graphite θmax = 29.0°, θmin = 2.6°
2θ/ω scans h = −1→8
Absorption correction: ψ scan (North et al., 1968) k = −1→10
Tmin = 0.728, Tmax = 0.846 l = −43→1
3016 measured reflections 3 standard reflections every 97 reflections
2683 independent reflections intensity decay: 3%
1928 reflections with I > 2σ(I)

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.061 H-atom parameters constrained
wR(F2) = 0.153 w = 1/[σ2(Fo2) + (0.0631P)2 + 1.1965P] where P = (Fo2 + 2Fc2)/3
S = 1.03 (Δ/σ)max < 0.001
2683 reflections Δρmax = 0.63 e Å3
172 parameters Δρmin = −0.39 e Å3
0 restraints Absolute structure: Flack (1983), 532 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: −0.01 (16)

Special details

Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 1.10027 (19) 0.87732 (14) 0.03372 (3) 0.0323 (2)
O1 0.8859 (6) 0.5383 (4) 0.05505 (8) 0.0393 (7)
N1 0.7630 (6) 0.6122 (4) 0.12114 (10) 0.0300 (7)
O2 1.0851 (7) 1.1013 (4) 0.11356 (10) 0.0511 (9)
C9 0.8558 (7) 0.3759 (6) 0.19114 (12) 0.0351 (9)
H9 0.9723 0.4434 0.1798 0.042*
C1 0.8724 (7) 0.6511 (5) 0.08437 (10) 0.0278 (8)
C6 0.6341 (8) 0.4423 (5) 0.12418 (12) 0.0345 (10)
H6 0.7011 0.3572 0.1041 0.041*
C4 0.8971 (9) 0.8843 (6) 0.15731 (11) 0.0373 (9)
H4A 1.0124 0.8199 0.1727 0.045*
H4B 0.8501 0.9863 0.1744 0.045*
C3 0.9911 (8) 0.9518 (6) 0.11576 (12) 0.0340 (9)
C8 0.6557 (7) 0.3579 (5) 0.16847 (12) 0.0305 (9)
C10 0.8816 (9) 0.2937 (6) 0.23044 (13) 0.0404 (10)
H10 1.0143 0.3077 0.2454 0.049*
C15 1.3821 (8) 0.9447 (7) 0.04512 (13) 0.0427 (11)
H15A 1.4586 0.9711 0.0191 0.064*
H15B 1.4578 0.8487 0.0596 0.064*
H15C 1.3805 1.0505 0.0627 0.064*
C2 0.9708 (7) 0.8304 (5) 0.08140 (11) 0.0285 (9)
C5 0.7006 (8) 0.7604 (6) 0.14990 (12) 0.0345 (10)
H5A 0.6507 0.7108 0.1767 0.041*
H5B 0.578 0.8286 0.1377 0.041*
C13 0.4867 (8) 0.2558 (6) 0.18589 (14) 0.0396 (10)
H13 0.3523 0.2426 0.1714 0.048*
C12 0.5156 (9) 0.1720 (6) 0.22507 (14) 0.0445 (11)
H12 0.401 0.1021 0.2363 0.053*
C11 0.7107 (9) 0.1916 (6) 0.24725 (14) 0.0443 (12)
H11 0.7278 0.1363 0.2735 0.053*
C14 0.9890 (9) 1.0887 (7) 0.01517 (15) 0.0544 (13)
H14A 1.0569 1.1193 −0.0114 0.082*
H14B 1.0205 1.1817 0.0355 0.082*
H14C 0.8304 1.078 0.0115 0.082*
C7 0.3927 (9) 0.4733 (7) 0.10987 (16) 0.0524 (13)
H7A 0.3922 0.5252 0.082 0.079*
H7B 0.3199 0.5539 0.1293 0.079*
H7C 0.3147 0.36 0.1094 0.079*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0354 (5) 0.0314 (4) 0.0300 (4) −0.0059 (5) 0.0034 (5) 0.0035 (4)
O1 0.056 (2) 0.0317 (14) 0.0304 (13) −0.0091 (19) 0.0042 (15) −0.0028 (11)
N1 0.0319 (17) 0.0246 (15) 0.0334 (15) −0.0086 (18) 0.0047 (14) 0.0014 (14)
O2 0.066 (2) 0.0325 (15) 0.0543 (17) −0.023 (2) 0.0150 (19) −0.0100 (13)
C9 0.034 (2) 0.0334 (19) 0.0379 (19) −0.002 (2) 0.0054 (17) 0.0015 (18)
C1 0.030 (2) 0.0288 (18) 0.0245 (15) −0.003 (2) −0.0033 (16) 0.0029 (14)
C6 0.040 (3) 0.0282 (18) 0.0352 (19) −0.010 (2) 0.0001 (19) 0.0041 (16)
C4 0.052 (2) 0.0315 (18) 0.0287 (17) −0.007 (3) 0.009 (2) −0.0067 (16)
C3 0.037 (2) 0.0305 (19) 0.0348 (19) −0.003 (2) 0.0052 (19) −0.0037 (17)
C8 0.036 (2) 0.0214 (17) 0.0341 (18) 0.0030 (19) 0.0052 (17) −0.0042 (15)
C10 0.042 (2) 0.041 (2) 0.039 (2) 0.006 (3) −0.001 (2) −0.0008 (18)
C15 0.031 (2) 0.055 (3) 0.042 (2) −0.006 (3) 0.008 (2) 0.001 (2)
C2 0.033 (2) 0.0234 (17) 0.0292 (17) −0.0035 (18) 0.0036 (16) 0.0020 (14)
C5 0.042 (2) 0.030 (2) 0.0321 (19) −0.002 (2) 0.0077 (19) −0.0005 (16)
C13 0.034 (2) 0.037 (2) 0.048 (2) −0.003 (2) 0.001 (2) 0.0091 (19)
C12 0.046 (3) 0.040 (2) 0.048 (3) −0.006 (3) 0.012 (2) 0.013 (2)
C11 0.057 (3) 0.041 (2) 0.035 (2) 0.013 (3) 0.009 (2) 0.0050 (19)
C14 0.051 (3) 0.057 (3) 0.055 (3) 0.004 (3) 0.004 (2) 0.026 (2)
C7 0.042 (3) 0.057 (3) 0.058 (3) −0.016 (3) −0.015 (3) 0.019 (2)

Geometric parameters (Å, °)

S1—C2 1.729 (4) C8—C13 1.378 (6)
S1—C15 1.796 (5) C10—C11 1.379 (7)
S1—C14 1.799 (5) C10—H10 0.93
O1—C1 1.250 (4) C15—H15A 0.96
N1—C1 1.364 (5) C15—H15B 0.96
N1—C5 1.473 (5) C15—H15C 0.96
N1—C6 1.479 (5) C5—H5A 0.97
O2—C3 1.244 (5) C5—H5B 0.97
C9—C10 1.391 (6) C13—C12 1.395 (6)
C9—C8 1.402 (6) C13—H13 0.93
C9—H9 0.93 C12—C11 1.369 (7)
C1—C2 1.455 (5) C12—H12 0.93
C6—C7 1.531 (7) C11—H11 0.93
C6—C8 1.538 (5) C14—H14A 0.96
C6—H6 0.98 C14—H14B 0.96
C4—C5 1.510 (6) C14—H14C 0.96
C4—C3 1.513 (5) C7—H7A 0.96
C4—H4A 0.97 C7—H7B 0.96
C4—H4B 0.97 C7—H7C 0.96
C3—C2 1.415 (5)
C2—S1—C15 107.6 (2) H15A—C15—H15B 109.5
C2—S1—C14 107.0 (2) S1—C15—H15C 109.5
C15—S1—C14 99.9 (2) H15A—C15—H15C 109.5
C1—N1—C5 119.4 (3) H15B—C15—H15C 109.5
C1—N1—C6 119.0 (3) C3—C2—C1 124.4 (3)
C5—N1—C6 117.5 (3) C3—C2—S1 120.1 (3)
C10—C9—C8 120.6 (4) C1—C2—S1 114.9 (3)
C10—C9—H9 119.7 N1—C5—C4 110.5 (3)
C8—C9—H9 119.7 N1—C5—H5A 109.5
O1—C1—N1 121.4 (3) C4—C5—H5A 109.5
O1—C1—C2 122.4 (3) N1—C5—H5B 109.5
N1—C1—C2 116.2 (3) C4—C5—H5B 109.5
N1—C6—C7 110.2 (4) H5A—C5—H5B 108.1
N1—C6—C8 111.2 (3) C8—C13—C12 120.5 (4)
C7—C6—C8 114.1 (4) C8—C13—H13 119.8
N1—C6—H6 107 C12—C13—H13 119.8
C7—C6—H6 107 C11—C12—C13 120.9 (4)
C8—C6—H6 107 C11—C12—H12 119.6
C5—C4—C3 110.8 (3) C13—C12—H12 119.6
C5—C4—H4A 109.5 C12—C11—C10 119.6 (4)
C3—C4—H4A 109.5 C12—C11—H11 120.2
C5—C4—H4B 109.5 C10—C11—H11 120.2
C3—C4—H4B 109.5 S1—C14—H14A 109.5
H4A—C4—H4B 108.1 S1—C14—H14B 109.5
O2—C3—C2 124.2 (4) H14A—C14—H14B 109.5
O2—C3—C4 120.7 (4) S1—C14—H14C 109.5
C2—C3—C4 115.1 (3) H14A—C14—H14C 109.5
C13—C8—C9 118.4 (4) H14B—C14—H14C 109.5
C13—C8—C6 121.6 (4) C6—C7—H7A 109.5
C9—C8—C6 119.9 (4) C6—C7—H7B 109.5
C11—C10—C9 120.1 (5) H7A—C7—H7B 109.5
C11—C10—H10 120 C6—C7—H7C 109.5
C9—C10—H10 120 H7A—C7—H7C 109.5
S1—C15—H15A 109.5 H7B—C7—H7C 109.5
S1—C15—H15B 109.5
C5—N1—C1—O1 −164.3 (4) O2—C3—C2—S1 5.4 (7)
C6—N1—C1—O1 −7.7 (6) C4—C3—C2—S1 −172.1 (3)
C5—N1—C1—C2 15.5 (5) O1—C1—C2—C3 −169.5 (4)
C6—N1—C1—C2 172.0 (3) N1—C1—C2—C3 10.7 (6)
C1—N1—C6—C7 −90.2 (5) O1—C1—C2—S1 1.8 (5)
C5—N1—C6—C7 66.8 (5) N1—C1—C2—S1 −178.0 (3)
C1—N1—C6—C8 142.2 (4) C15—S1—C2—C3 46.9 (4)
C5—N1—C6—C8 −60.8 (5) C14—S1—C2—C3 −59.6 (4)
C5—C4—C3—O2 151.0 (4) C15—S1—C2—C1 −124.8 (3)
C5—C4—C3—C2 −31.4 (6) C14—S1—C2—C1 128.7 (3)
C10—C9—C8—C13 −0.6 (6) C1—N1—C5—C4 −48.4 (5)
C10—C9—C8—C6 −177.2 (4) C6—N1—C5—C4 154.7 (3)
N1—C6—C8—C13 149.8 (4) C3—C4—C5—N1 54.5 (5)
C7—C6—C8—C13 24.4 (6) C9—C8—C13—C12 −0.3 (6)
N1—C6—C8—C9 −33.6 (5) C6—C8—C13—C12 176.3 (4)
C7—C6—C8—C9 −159.1 (4) C8—C13—C12—C11 0.9 (7)
C8—C9—C10—C11 0.8 (6) C13—C12—C11—C10 −0.7 (7)
O2—C3—C2—C1 176.3 (4) C9—C10—C11—C12 −0.2 (7)
C4—C3—C2—C1 −1.2 (6)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C7—H7C···O2i 0.96 2.36 3.315 (6) 172
C15—H15A···O1ii 0.96 2.38 3.167 (5) 138

Symmetry codes: (i) x−1, y−1, z; (ii) x+1/2, −y+3/2, −z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BT5438).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810052955/bt5438sup1.cif

e-67-0o239-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052955/bt5438Isup2.hkl

e-67-0o239-Isup2.hkl (129.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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