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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jan 8;67(Pt 2):o254. doi: 10.1107/S1600536810053201

2-Isobutyl-6-phenyl­imidazo[2,1-b][1,3,4]thia­diazole

Hoong-Kun Fun a,*,, Madhukar Hemamalini a, D Jagadeesh Prasad b, Prakash Anil Castelino c, V V Anitha b
PMCID: PMC3051612  PMID: 21522948

Abstract

In the title compound, C14H15N3S, the imidazo[2,1-b][1,3,4]thia­diazole fused-ring system is close to planar, with a maximum deviation of 0.042 (1) Å, and the dihedral angle between it and the phenyl ring is 24.21 (6)°. The isobutyl group is disordered over two sets of sites in a 0.899 (9):0.101 (9) ratio. In the crystal, weak aromatic π–π stacking inter­actions involving the imidazole and thia­diazole rings with a centroid–centroid distance of 3.8067 (7) Å occur.

Related literature

For applications of imidazo [2,1-b]-1,3,4-thia­diazole derivatives, see: Terzioglu & Gursoy (2003); Kolavi et al. (2006); Gadad et al. (2000); Andotra et al. (1997); Khazi et al. (1996); Andreani et al. (1982, 1987, 1991); Eberle & Robert (1977).graphic file with name e-67-0o254-scheme1.jpg

Experimental

Crystal data

  • C14H15N3S

  • M r = 257.35

  • Monoclinic, Inline graphic

  • a = 5.6921 (1) Å

  • b = 19.6453 (4) Å

  • c = 12.3610 (2) Å

  • β = 96.127 (1)°

  • V = 1374.35 (4) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.22 mm−1

  • T = 296 K

  • 0.65 × 0.48 × 0.25 mm

Data collection

  • Bruker SMART APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2009) T min = 0.870, T max = 0.947

  • 36499 measured reflections

  • 4038 independent reflections

  • 3378 reflections with I > 2σ(I)

  • R int = 0.028

Refinement

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.115

  • S = 1.03

  • 4038 reflections

  • 191 parameters

  • 3 restraints

  • H-atom parameters constrained

  • Δρmax = 0.31 e Å−3

  • Δρmin = −0.30 e Å−3

Data collection: APEX2 (Bruker, 2009); cell refinement: SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810053201/hb5776sup1.cif

e-67-0o254-sup1.cif (20.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053201/hb5776Isup2.hkl

e-67-0o254-Isup2.hkl (197.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Acknowledgments

HKF and MH thank the Malaysian Government and Universiti Sains Malaysia for the Research University grant No. 1001/PFIZIK/811160. MH also thanks Universiti Sains Malaysia for a post-doctoral research fellowship.

supplementary crystallographic information

Comment

Imidazo [2,1-b]-1,3,4-thiadiazole derivatives are found to be biological active compounds possessing anticancer (Terzioglu & Gursoy, 2003), antitubercular (Kolavi et al., 2006), antibacterial (Gadad et al., 2000), antifungal (Andotra et al., 1997), anticonvulsant, analgesic (Khazi et al., 1996), anti-inflammatory (Andreani et al., 1982), diuretic (Andreani et al., 1991) and herbicidal activities (Andreani et al., 1991). Moreover 1,3,4-thiadiazoles have many interesting biological activities, for example, 2-amino-5-(trifluoromethylphenyl alkyl)-1,3,4 thidadiazoles were used in the treatment of insomnia and anxiety (Eberle & Robert, 1977).

The title compound is shown in Fig. 1. The imidazo[2,1-b] [1,3,4]thiadiazole (S1/N1–N3/C7–C10) ring is essentially planar, with a maximum deviation of 0.042 (1) Å for atom C7. The isobutyl group is disordered over two sets of positions, with a refined occupancy ratio of 0.899 (9):0.101 (9). The dihedral angle between the imidazo[2,1-b] [1,3,4]thiadiazole (S1/N1–N3/C7–C10) ring and the benzene ring (C1–C6) is 24.21 (6)°.

In the crystal structure (Fig. 2), there are no classical hydrogen bonds and stabilization is achieved by weak π–π stacking interactions between the thiadiazole (S1/N2–N3/C8–C9) ring and imidazole (N1–N2/C7–C8/C10) ring with centroid-to-centroid distance of 3.8067 (7) Å [symmetry code: 2-x, -y, 2-z].

Experimental

5-isobutyl-1,3,4-thiadiazole-2-amine (1 molar equivalent) and phenacyl bromide (1 molar equivalent) are refluxed with ethanol for 4 hrs. The solvent was then distilled off and the reaction mass was poured into the crushed ice. The resulting solid, 2-isobutylimidazo[2,1-b][1,3,4]thiadiazole, that separated out was filtered and dried. The compound was recrystallized using ethanol and DMF mixture to form yellow blocks of the title compound. M.pt. 121–126°C.

Refinement

All the H atoms were positioned geometrically [C–H = 0.93–0.98 Å] and were refined using a riding model, with Uiso(H) = 1.2 or 1.5 Ueq(C). The isobutyl group is disordered over two sites with refined occupancies of 0.899 (9):0.101 (9).

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of the title compound, showing 50% probability displacement ellipsoids. Open bonds represent minor disorder components [H atoms are omitted for clarity].

Fig. 2.

Fig. 2.

The crystal packing of the title compound (I).

Crystal data

C14H15N3S F(000) = 544
Mr = 257.35 Dx = 1.244 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 9875 reflections
a = 5.6921 (1) Å θ = 2.7–30.3°
b = 19.6453 (4) Å µ = 0.22 mm1
c = 12.3610 (2) Å T = 296 K
β = 96.127 (1)° Block, yellow
V = 1374.35 (4) Å3 0.65 × 0.48 × 0.25 mm
Z = 4

Data collection

Bruker SMART APEXII CCD diffractometer 4038 independent reflections
Radiation source: fine-focus sealed tube 3378 reflections with I > 2σ(I)
graphite Rint = 0.028
φ and ω scans θmax = 30.1°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009) h = −8→8
Tmin = 0.870, Tmax = 0.947 k = −27→27
36499 measured reflections l = −17→17

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115 H-atom parameters constrained
S = 1.03 w = 1/[σ2(Fo2) + (0.0607P)2 + 0.2698P] where P = (Fo2 + 2Fc2)/3
4038 reflections (Δ/σ)max = 0.001
191 parameters Δρmax = 0.31 e Å3
3 restraints Δρmin = −0.30 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
S1 −0.10652 (5) 0.001167 (15) 0.83286 (3) 0.04296 (11)
N1 −0.09710 (16) 0.12234 (5) 0.96090 (8) 0.0375 (2)
N2 0.23227 (16) 0.07221 (5) 0.91884 (8) 0.0369 (2)
N3 0.34801 (18) 0.02027 (5) 0.87202 (9) 0.0412 (2)
C1 −0.1245 (2) 0.25685 (7) 1.06391 (14) 0.0544 (3)
H1A −0.2492 0.2450 1.0125 0.065*
C2 −0.1425 (3) 0.31387 (9) 1.12942 (17) 0.0724 (5)
H2A −0.2792 0.3401 1.1213 0.087*
C3 0.0404 (3) 0.33173 (9) 1.20606 (16) 0.0731 (5)
H3A 0.0269 0.3697 1.2498 0.088*
C4 0.2424 (3) 0.29331 (9) 1.21764 (14) 0.0688 (4)
H4A 0.3664 0.3055 1.2691 0.083*
C5 0.2629 (3) 0.23646 (8) 1.15317 (12) 0.0540 (3)
H5A 0.4005 0.2106 1.1620 0.065*
C6 0.0797 (2) 0.21756 (6) 1.07525 (10) 0.0395 (2)
C7 0.10261 (19) 0.15721 (6) 1.00717 (9) 0.0361 (2)
C8 −0.00847 (18) 0.07150 (6) 0.90932 (9) 0.0346 (2)
C9 0.1913 (2) −0.02035 (6) 0.82471 (10) 0.0387 (2)
C10 0.3078 (2) 0.12707 (6) 0.98180 (10) 0.0406 (3)
H10A 0.4625 0.1408 1.0026 0.049*
C11 0.2544 (2) −0.08474 (6) 0.77025 (11) 0.0456 (3)
H11A 0.1916 −0.1229 0.8079 0.055* 0.899 (9)
H11B 0.4251 −0.0891 0.7778 0.055* 0.899 (9)
H11C 0.1818 −0.1211 0.8065 0.055* 0.101 (9)
H11D 0.4220 −0.0903 0.7866 0.055* 0.101 (9)
C12 0.1633 (7) −0.08944 (18) 0.6491 (3) 0.0618 (9) 0.899 (9)
H12A −0.0066 −0.0798 0.6399 0.074* 0.899 (9)
C13 0.2898 (12) −0.03784 (19) 0.5858 (3) 0.1205 (16) 0.899 (9)
H13A 0.2567 0.0071 0.6105 0.181* 0.899 (9)
H13B 0.2362 −0.0418 0.5098 0.181* 0.899 (9)
H13C 0.4569 −0.0460 0.5970 0.181* 0.899 (9)
C14 0.2053 (8) −0.16347 (16) 0.6126 (3) 0.0948 (11) 0.899 (9)
H14A 0.1100 −0.1940 0.6500 0.142* 0.899 (9)
H14B 0.3690 −0.1750 0.6295 0.142* 0.899 (9)
H14C 0.1629 −0.1673 0.5355 0.142* 0.899 (9)
C12A 0.205 (7) −0.0960 (19) 0.666 (2) 0.081 (12) 0.101 (9)
H12B 0.0650 −0.1245 0.6708 0.097* 0.101 (9)
C13A 0.096 (9) −0.0463 (17) 0.583 (3) 0.122 (14) 0.101 (9)
H13D 0.0313 −0.0705 0.5196 0.182* 0.101 (9)
H13E 0.2154 −0.0152 0.5641 0.182* 0.101 (9)
H13F −0.0266 −0.0214 0.6131 0.182* 0.101 (9)
C14A 0.347 (8) −0.147 (2) 0.601 (2) 0.119 (13) 0.101 (9)
H14D 0.2895 −0.1445 0.5251 0.179* 0.101 (9)
H14E 0.3267 −0.1923 0.6271 0.179* 0.101 (9)
H14F 0.5114 −0.1350 0.6105 0.179* 0.101 (9)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.03290 (16) 0.04292 (18) 0.0523 (2) 0.00072 (10) 0.00121 (12) −0.00946 (12)
N1 0.0321 (4) 0.0376 (5) 0.0430 (5) 0.0029 (4) 0.0052 (4) −0.0013 (4)
N2 0.0301 (4) 0.0383 (5) 0.0433 (5) 0.0006 (3) 0.0085 (3) −0.0043 (4)
N3 0.0344 (5) 0.0421 (5) 0.0484 (6) 0.0028 (4) 0.0112 (4) −0.0066 (4)
C1 0.0432 (7) 0.0453 (7) 0.0753 (9) 0.0023 (5) 0.0096 (6) −0.0114 (6)
C2 0.0595 (9) 0.0530 (8) 0.1081 (14) 0.0077 (7) 0.0254 (9) −0.0217 (9)
C3 0.0771 (11) 0.0602 (9) 0.0865 (12) −0.0070 (8) 0.0290 (9) −0.0330 (9)
C4 0.0735 (11) 0.0698 (10) 0.0628 (9) −0.0057 (8) 0.0062 (8) −0.0265 (8)
C5 0.0543 (8) 0.0548 (8) 0.0522 (7) 0.0028 (6) 0.0029 (6) −0.0118 (6)
C6 0.0416 (6) 0.0358 (5) 0.0426 (6) −0.0016 (4) 0.0116 (5) −0.0015 (4)
C7 0.0354 (5) 0.0351 (5) 0.0383 (5) −0.0004 (4) 0.0068 (4) 0.0000 (4)
C8 0.0297 (5) 0.0364 (5) 0.0378 (5) 0.0012 (4) 0.0038 (4) 0.0004 (4)
C9 0.0371 (5) 0.0393 (5) 0.0403 (6) 0.0034 (4) 0.0077 (4) −0.0009 (4)
C10 0.0328 (5) 0.0413 (6) 0.0482 (6) −0.0040 (4) 0.0071 (4) −0.0070 (5)
C11 0.0472 (6) 0.0403 (6) 0.0503 (7) 0.0036 (5) 0.0107 (5) −0.0065 (5)
C12 0.0621 (18) 0.0715 (19) 0.0501 (12) 0.0138 (12) −0.0009 (11) −0.0205 (13)
C13 0.182 (5) 0.123 (3) 0.0616 (15) −0.005 (3) 0.037 (2) 0.0168 (16)
C14 0.104 (2) 0.0893 (19) 0.0898 (18) 0.0083 (16) 0.0063 (16) −0.0506 (15)
C12A 0.049 (13) 0.082 (17) 0.11 (3) 0.033 (11) −0.001 (12) 0.044 (17)
C13A 0.15 (4) 0.12 (3) 0.088 (19) −0.01 (2) 0.00 (2) −0.037 (19)
C14A 0.15 (3) 0.14 (3) 0.070 (14) −0.02 (2) 0.020 (18) −0.055 (16)

Geometric parameters (Å, °)

S1—C8 1.7324 (11) C11—C12 1.534 (3)
S1—C9 1.7605 (12) C11—H11A 0.9700
N1—C8 1.3142 (14) C11—H11B 0.9700
N1—C7 1.3963 (15) C11—H11C 0.9600
N2—C8 1.3629 (14) C11—H11D 0.9600
N2—C10 1.3714 (15) C12—C13 1.509 (5)
N2—N3 1.3753 (13) C12—C14 1.549 (4)
N3—C9 1.2895 (16) C12—H12A 0.9800
C1—C6 1.3894 (18) C13—H13A 0.9600
C1—C2 1.392 (2) C13—H13B 0.9600
C1—H1A 0.9300 C13—H13C 0.9600
C2—C3 1.376 (3) C14—H14A 0.9600
C2—H2A 0.9300 C14—H14B 0.9600
C3—C4 1.370 (3) C14—H14C 0.9600
C3—H3A 0.9300 C12A—C13A 1.501 (18)
C4—C5 1.384 (2) C12A—C14A 1.563 (18)
C4—H4A 0.9300 C12A—H12B 0.9800
C5—C6 1.3925 (19) C13A—H13D 0.9600
C5—H5A 0.9300 C13A—H13E 0.9600
C6—C7 1.4678 (16) C13A—H13F 0.9600
C7—C10 1.3753 (15) C14A—H14D 0.9600
C9—C11 1.4946 (16) C14A—H14E 0.9600
C10—H10A 0.9300 C14A—H14F 0.9600
C11—C12A 1.30 (3)
C8—S1—C9 88.09 (5) C12A—C11—H11C 106.0
C8—N1—C7 103.51 (9) C9—C11—H11C 106.5
C8—N2—C10 107.97 (9) C12—C11—H11C 107.0
C8—N2—N3 118.59 (9) H11B—C11—H11C 111.4
C10—N2—N3 133.36 (10) C12A—C11—H11D 107.0
C9—N3—N2 108.10 (9) C9—C11—H11D 106.5
C6—C1—C2 120.06 (15) C12—C11—H11D 115.0
C6—C1—H1A 120.0 H11A—C11—H11D 102.7
C2—C1—H1A 120.0 H11C—C11—H11D 106.5
C3—C2—C1 120.55 (16) C13—C12—C11 109.6 (3)
C3—C2—H2A 119.7 C13—C12—C14 112.5 (3)
C1—C2—H2A 119.7 C11—C12—C14 107.1 (3)
C4—C3—C2 119.75 (15) C13—C12—H12A 109.2
C4—C3—H3A 120.1 C11—C12—H12A 109.2
C2—C3—H3A 120.1 C14—C12—H12A 109.2
C3—C4—C5 120.38 (16) C12—C13—H13A 109.5
C3—C4—H4A 119.8 C12—C13—H13B 109.5
C5—C4—H4A 119.8 H13A—C13—H13B 109.5
C4—C5—C6 120.69 (14) C12—C13—H13C 109.5
C4—C5—H5A 119.7 H13A—C13—H13C 109.5
C6—C5—H5A 119.7 H13B—C13—H13C 109.5
C1—C6—C5 118.57 (12) C12—C14—H14A 109.5
C1—C6—C7 121.03 (12) C12—C14—H14B 109.5
C5—C6—C7 120.40 (11) H14A—C14—H14B 109.5
C10—C7—N1 111.69 (10) C12—C14—H14C 109.5
C10—C7—C6 127.46 (11) H14A—C14—H14C 109.5
N1—C7—C6 120.84 (10) H14B—C14—H14C 109.5
N1—C8—N2 112.63 (10) C11—C12A—C13A 126 (2)
N1—C8—S1 138.83 (9) C11—C12A—C14A 123 (2)
N2—C8—S1 108.52 (8) C13A—C12A—C14A 105 (2)
N3—C9—C11 122.70 (11) C11—C12A—H12B 97.6
N3—C9—S1 116.69 (9) C13A—C12A—H12B 97.6
C11—C9—S1 120.53 (9) C14A—C12A—H12B 97.6
N2—C10—C7 104.19 (10) C12A—C13A—H13D 109.5
N2—C10—H10A 127.9 C12A—C13A—H13E 109.5
C7—C10—H10A 127.9 H13D—C13A—H13E 109.5
C12A—C11—C9 123.4 (13) C12A—C13A—H13F 109.5
C9—C11—C12 114.71 (15) H13D—C13A—H13F 109.5
C12A—C11—H11A 106.9 H13E—C13A—H13F 109.5
C9—C11—H11A 108.6 C12A—C14A—H14D 109.5
C12—C11—H11A 108.6 C12A—C14A—H14E 109.5
C12A—C11—H11B 100.8 H14D—C14A—H14E 109.5
C9—C11—H11B 108.6 C12A—C14A—H14F 109.5
C12—C11—H11B 108.6 H14D—C14A—H14F 109.5
H11A—C11—H11B 107.6 H14E—C14A—H14F 109.5
C8—N2—N3—C9 0.80 (15) C9—S1—C8—N1 −177.43 (13)
C10—N2—N3—C9 177.01 (12) C9—S1—C8—N2 1.10 (9)
C6—C1—C2—C3 −0.3 (3) N2—N3—C9—C11 −176.63 (11)
C1—C2—C3—C4 0.3 (3) N2—N3—C9—S1 0.17 (13)
C2—C3—C4—C5 −0.4 (3) C8—S1—C9—N3 −0.77 (10)
C3—C4—C5—C6 0.3 (3) C8—S1—C9—C11 176.10 (10)
C2—C1—C6—C5 0.2 (2) C8—N2—C10—C7 −0.12 (13)
C2—C1—C6—C7 179.96 (14) N3—N2—C10—C7 −176.62 (12)
C4—C5—C6—C1 −0.2 (2) N1—C7—C10—N2 −0.26 (13)
C4—C5—C6—C7 −179.99 (13) C6—C7—C10—N2 178.61 (11)
C8—N1—C7—C10 0.54 (13) N3—C9—C11—C12A −117 (2)
C8—N1—C7—C6 −178.42 (10) S1—C9—C11—C12A 66 (2)
C1—C6—C7—C10 156.55 (13) N3—C9—C11—C12 −121.5 (2)
C5—C6—C7—C10 −23.69 (19) S1—C9—C11—C12 61.8 (2)
C1—C6—C7—N1 −24.67 (17) C12A—C11—C12—C13 −89 (14)
C5—C6—C7—N1 155.09 (12) C9—C11—C12—C13 67.7 (4)
C7—N1—C8—N2 −0.62 (13) C12A—C11—C12—C14 33 (13)
C7—N1—C8—S1 177.88 (11) C9—C11—C12—C14 −170.0 (2)
C10—N2—C8—N1 0.49 (13) C9—C11—C12A—C13A 5(6)
N3—N2—C8—N1 177.59 (10) C12—C11—C12A—C13A 30 (10)
C10—N2—C8—S1 −178.47 (8) C9—C11—C12A—C14A 155 (3)
N3—N2—C8—S1 −1.36 (13)

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5776).

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810053201/hb5776sup1.cif

e-67-0o254-sup1.cif (20.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053201/hb5776Isup2.hkl

e-67-0o254-Isup2.hkl (197.9KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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