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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jan 29;67(Pt 2):m285. doi: 10.1107/S1600536811002728

catena-Poly[[[2-(pyridin-2-yldisulfan­yl)pyridine-κ2 N,S]copper(I)]-μ1,5-dicyanamido]

Shixi Wu a, Wei Jiang a, Fengsheng Li a,*, Li Liu a
PMCID: PMC3051621  PMID: 21522929

Abstract

In the title compound, [Cu(C2N3)(C10H8N2S2)]n, the CuI atoms are connected by bridging dicyanamide ligands, forming chains parallel to [100]. Each CuI atom displays a tetra­hedral coordination environment, formed by one S atom and three N atoms from one 2-(pyridin-2-yldisulfan­yl)pyridine and two dicyanamide ligands. The crystal structure is stabilized by C—H⋯N hydrogen bonds, forming a three-dimensional network.

Related literature

For potential applications of metal-organic frameworks, see: Eddaoudi et al. (2001 ▶). For metal-organic frameworks constructed from flexible ligands, see: Xu et al. (2009 ▶). For related structures, see: Mal et al. (2006 ▶); Schlueter et al. (2007 ▶); Sen et al. (2007 ▶).graphic file with name e-67-0m285-scheme1.jpg

Experimental

Crystal data

  • [Cu(C2N3)(C10H8N2S2)]

  • M r = 349.92

  • Triclinic, Inline graphic

  • a = 7.6294 (15) Å

  • b = 9.5964 (19) Å

  • c = 10.202 (2) Å

  • α = 84.19 (3)°

  • β = 80.63 (3)°

  • γ = 70.93 (3)°

  • V = 695.6 (2) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 1.87 mm−1

  • T = 293 K

  • 0.20 × 0.16 × 0.12 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.893, T max = 1.000

  • 6615 measured reflections

  • 2669 independent reflections

  • 2301 reflections with I > 2σ(I)

  • R int = 0.018

Refinement

  • R[F 2 > 2σ(F 2)] = 0.028

  • wR(F 2) = 0.081

  • S = 1.07

  • 2669 reflections

  • 181 parameters

  • H-atom parameters constrained

  • Δρmax = 0.39 e Å−3

  • Δρmin = −0.29 e Å−3

Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811002728/zq2085sup1.cif

e-67-0m285-sup1.cif (15.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811002728/zq2085Isup2.hkl

e-67-0m285-Isup2.hkl (131.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C9—H9⋯N3i 0.93 2.53 3.453 (3) 171

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors are grateful for the financial support of the National Natural Science Foundation of China (Nos. 50602024, 50972060) and NUST Research Funding (No. 2010ZDJH06).

supplementary crystallographic information

Comment

Metal-organic compounds have attracted much attention because of their diverse structures (Eddaoudi et al., 2001). Flexible ligands can play different roles in constructing metal-organic frameworks (Xu et al., 2009). The title compound, {C12H8CuN5S2}n, is constructed by two kinds of flexible ligands: briding dicyanamide ligands and chelate 2-(pyridin-2-yldisulfanyl)pyridine ligands. In this paper, the crystal structure of the title compound is presented. As illustrated in Fig. 1, the Cu atoms are connected by briding dicyanamide ligands, forming a serrate chain. Each Cu atom displays a tetrahedral coordination environment, formed by one S atom and three N atoms from one 2-(pyridin-2-yldisulfanyl)pyridine and two dicyanamide ligands, where the Cu—S and average Cu—N bonds are 2.472 (1) and 1.969 Å, respectively. The crystal structure is stabilized by C—H···N hydrogen bonds [H9···N3iii = 2.53 Å, C9···N3iii = 3.453 (3) Å, and C9—H9···N3iii = 171°] between the central N atom of the dicyanamide and one H atom of a pyridine ring, forming a three-dimensional network [symmetry code: (iii) x + 1, y - 1, z].

Experimental

CuN(CN)2 (0.4 mmol) and NaN(CN)2 (1.2 mmol) were added into 2 ml DMF with thorough stir for 6 minutes. After filtration, the colorless filtrate was carefully laid on the surface with the solution of bis(2-pyridyl)disulfide (0.5 mmol) in 5 ml i-PrOH. Colorless crystals were obtained after 3 weeks.

Refinement

The H atoms were positioned geometrically and refined with a riding model, with C—H = 0.93 Å and Uiso = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

The molecular structure of a portion of the title compound, with atom labels and 30% probability displacement ellipsoids. All H atoms have been omitted [symmetry code: (i) x+1, y, z].

Crystal data

[Cu(C2N3)(C10H8N2S2)] Z = 2
Mr = 349.92 F(000) = 352
Triclinic, P1 Dx = 1.671 Mg m−3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.6294 (15) Å Cell parameters from 3088 reflections
b = 9.5964 (19) Å θ = 3.0–28.9°
c = 10.202 (2) Å µ = 1.87 mm−1
α = 84.19 (3)° T = 293 K
β = 80.63 (3)° Block, colourless
γ = 70.93 (3)° 0.20 × 0.16 × 0.12 mm
V = 695.6 (2) Å3

Data collection

Bruker APEXII CCD diffractometer 2669 independent reflections
Radiation source: fine-focus sealed tube 2301 reflections with I > 2σ(I)
graphite Rint = 0.018
ω scans θmax = 26.0°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −8→9
Tmin = 0.893, Tmax = 1.000 k = −11→11
6615 measured reflections l = −12→12

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081 H-atom parameters constrained
S = 1.07 w = 1/[σ2(Fo2) + (0.0478P)2 + 0.0204P] where P = (Fo2 + 2Fc2)/3
2669 reflections (Δ/σ)max < 0.001
181 parameters Δρmax = 0.39 e Å−3
0 restraints Δρmin = −0.29 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cu1 −0.03943 (3) 0.83530 (3) 0.16964 (3) 0.05693 (13)
S1 −0.00326 (7) 0.67390 (7) 0.37486 (5) 0.05609 (17)
S2 0.11161 (9) 0.47767 (7) 0.28919 (5) 0.06255 (18)
N1 −0.3026 (2) 0.9293 (2) 0.16879 (19) 0.0580 (5)
N2 0.1131 (2) 0.9633 (2) 0.17961 (19) 0.0599 (5)
N3 −0.6377 (2) 1.0592 (2) 0.2077 (2) 0.0694 (6)
N4 0.3589 (3) 0.6469 (2) 0.38308 (18) 0.0610 (5)
N5 0.1249 (2) 0.65814 (18) 0.06703 (15) 0.0464 (4)
C1 −0.4605 (3) 0.9840 (2) 0.1839 (2) 0.0489 (5)
C2 0.2361 (3) 1.0016 (2) 0.1905 (2) 0.0480 (5)
C3 0.1841 (3) 0.7106 (2) 0.43562 (18) 0.0452 (4)
C4 0.1311 (3) 0.8103 (3) 0.5330 (2) 0.0612 (6)
H4 0.0059 0.8499 0.5684 0.073*
C5 0.2682 (4) 0.8504 (3) 0.5770 (2) 0.0709 (7)
H5 0.2372 0.9197 0.6414 0.085*
C6 0.4516 (4) 0.7863 (3) 0.5242 (2) 0.0692 (7)
H6 0.5475 0.8109 0.5519 0.083*
C7 0.4889 (3) 0.6858 (3) 0.4302 (2) 0.0695 (7)
H7 0.6136 0.6409 0.3963 0.083*
C8 0.1811 (3) 0.5212 (2) 0.11824 (18) 0.0462 (5)
C9 0.2919 (4) 0.4027 (2) 0.0454 (2) 0.0627 (6)
H9 0.3245 0.3078 0.0850 0.075*
C10 0.3528 (4) 0.4264 (3) −0.0852 (2) 0.0681 (7)
H10 0.4289 0.3484 −0.1362 0.082*
C11 0.2996 (4) 0.5682 (3) −0.1403 (2) 0.0660 (6)
H11 0.3402 0.5877 −0.2292 0.079*
C12 0.1868 (3) 0.6795 (2) −0.0633 (2) 0.0568 (5)
H12 0.1505 0.7748 −0.1019 0.068*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cu1 0.03597 (17) 0.0595 (2) 0.0745 (2) −0.01273 (13) −0.00278 (13) −0.01572 (14)
S1 0.0434 (3) 0.0798 (4) 0.0469 (3) −0.0244 (3) 0.0007 (2) −0.0063 (3)
S2 0.0847 (4) 0.0645 (4) 0.0502 (3) −0.0423 (3) −0.0082 (3) 0.0048 (3)
N1 0.0393 (10) 0.0623 (11) 0.0748 (12) −0.0157 (9) −0.0099 (8) −0.0125 (9)
N2 0.0394 (10) 0.0572 (11) 0.0836 (13) −0.0155 (9) −0.0067 (9) −0.0086 (10)
N3 0.0382 (10) 0.0433 (10) 0.1278 (17) −0.0077 (8) −0.0184 (10) −0.0154 (11)
N4 0.0464 (10) 0.0763 (13) 0.0606 (10) −0.0187 (9) 0.0016 (8) −0.0213 (10)
N5 0.0448 (9) 0.0463 (9) 0.0459 (9) −0.0120 (7) −0.0051 (7) −0.0025 (7)
C1 0.0433 (12) 0.0430 (10) 0.0654 (12) −0.0170 (9) −0.0154 (10) −0.0011 (9)
C2 0.0353 (10) 0.0381 (10) 0.0647 (12) −0.0040 (8) −0.0064 (9) −0.0028 (9)
C3 0.0450 (11) 0.0532 (11) 0.0357 (9) −0.0147 (9) −0.0049 (8) 0.0008 (9)
C4 0.0542 (13) 0.0674 (14) 0.0528 (11) −0.0058 (11) −0.0028 (10) −0.0145 (11)
C5 0.0843 (18) 0.0700 (15) 0.0601 (13) −0.0197 (14) −0.0148 (12) −0.0186 (12)
C6 0.0719 (16) 0.0802 (17) 0.0667 (14) −0.0325 (14) −0.0237 (13) −0.0036 (13)
C7 0.0453 (12) 0.0879 (18) 0.0762 (15) −0.0188 (12) −0.0066 (11) −0.0184 (14)
C8 0.0496 (11) 0.0484 (11) 0.0467 (10) −0.0227 (9) −0.0093 (9) −0.0022 (9)
C9 0.0802 (17) 0.0417 (11) 0.0665 (14) −0.0190 (11) −0.0118 (12) −0.0030 (11)
C10 0.0834 (18) 0.0525 (13) 0.0635 (14) −0.0162 (12) 0.0008 (12) −0.0167 (11)
C11 0.0817 (17) 0.0652 (15) 0.0466 (11) −0.0200 (13) 0.0006 (11) −0.0081 (11)
C12 0.0596 (13) 0.0518 (12) 0.0520 (11) −0.0108 (10) −0.0056 (10) 0.0024 (10)

Geometric parameters (Å, °)

Cu1—N1 1.9143 (18) C3—C4 1.369 (3)
Cu1—N2 1.967 (2) C4—C5 1.377 (4)
Cu1—N5 2.0244 (18) C4—H4 0.9300
Cu1—S1 2.4720 (10) C5—C6 1.373 (4)
S1—C3 1.792 (2) C5—H5 0.9300
S1—S2 2.0207 (11) C6—C7 1.361 (4)
S2—C8 1.787 (2) C6—H6 0.9300
N1—C1 1.138 (3) C7—H7 0.9300
N2—C2 1.138 (3) C8—C9 1.378 (3)
N3—C2i 1.298 (3) C9—C10 1.360 (3)
N3—C1 1.303 (3) C9—H9 0.9300
N4—C3 1.319 (3) C10—C11 1.375 (3)
N4—C7 1.337 (3) C10—H10 0.9300
N5—C8 1.322 (3) C11—C12 1.359 (3)
N5—C12 1.356 (3) C11—H11 0.9300
C2—N3ii 1.298 (3) C12—H12 0.9300
N1—Cu1—N2 117.16 (8) C6—C5—C4 118.9 (2)
N1—Cu1—N5 126.58 (8) C6—C5—H5 120.6
N2—Cu1—N5 107.60 (7) C4—C5—H5 120.6
N1—Cu1—S1 106.75 (7) C7—C6—C5 118.1 (2)
N2—Cu1—S1 104.29 (6) C7—C6—H6 121.0
N5—Cu1—S1 87.90 (5) C5—C6—H6 121.0
C3—S1—S2 105.95 (8) N4—C7—C6 124.6 (2)
C3—S1—Cu1 102.35 (7) N4—C7—H7 117.7
S2—S1—Cu1 98.20 (4) C6—C7—H7 117.7
C8—S2—S1 105.52 (8) N5—C8—C9 123.48 (18)
C1—N1—Cu1 172.06 (19) N5—C8—S2 121.22 (16)
C2—N2—Cu1 161.63 (17) C9—C8—S2 115.29 (16)
C2i—N3—C1 120.23 (19) C10—C9—C8 119.1 (2)
C3—N4—C7 115.9 (2) C10—C9—H9 120.5
C8—N5—C12 116.52 (18) C8—C9—H9 120.5
C8—N5—Cu1 124.88 (13) C9—C10—C11 118.6 (2)
C12—N5—Cu1 118.59 (14) C9—C10—H10 120.7
N1—C1—N3 173.2 (2) C11—C10—H10 120.7
N2—C2—N3ii 173.5 (2) C12—C11—C10 119.2 (2)
N4—C3—C4 124.4 (2) C12—C11—H11 120.4
N4—C3—S1 119.92 (16) C10—C11—H11 120.4
C4—C3—S1 115.61 (16) N5—C12—C11 123.1 (2)
C3—C4—C5 118.1 (2) N5—C12—H12 118.5
C3—C4—H4 120.9 C11—C12—H12 118.5
C5—C4—H4 120.9

Symmetry codes: (i) x−1, y, z; (ii) x+1, y, z.

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C9—H9···N3iii 0.93 2.53 3.453 (3) 171

Symmetry codes: (iii) x+1, y−1, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: ZQ2085).

References

  1. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Eddaoudi, M., Moler, D. B., Li, H. L., Chen, B. L., Reineke, T. M., O’Keeffe, M. & Yaghi, O. M. (2001). Acc. Chem. Res. 34, 319–330. [DOI] [PubMed]
  3. Mal, D., Tuchagues, J.-P., Chakraborty, S., Mukherjee, A. K., Sen, R. & Koner, S. (2006). Inorg. Chim. Acta, 359, 4431–4435.
  4. Schlueter, J. A., Manson, J. L., Hyzer, K. A. & Geiser, U. (2007). Polyhedron, 26, 2264–2272.
  5. Sen, S., Mitra, S., Hughes, D. L., Rosair, G. & Desplanches, C. (2007). Inorg. Chim. Acta, 360, 4085–4092.
  6. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Xu, B., Lu, J. & Cao, R. (2009). Cryst. Growth Des. 9, 3003–3005.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811002728/zq2085sup1.cif

e-67-0m285-sup1.cif (15.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811002728/zq2085Isup2.hkl

e-67-0m285-Isup2.hkl (131.1KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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