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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jan 29;67(Pt 2):m278–m279. doi: 10.1107/S1600536811003059

Bis(μ-pyridine-2,5-dicarboxyl­ato)-κ3 N,O 2:O 5;κ3 O 5:N,O 2-bis­[aqua­(2,2′-bipyridine-κ2 N,N′)cobalt(II)] dihydrate

Shie Fu Lush a,*
PMCID: PMC3051640  PMID: 21522925

Abstract

In the centrosymmetric title compound, [Co2(C7H3NO4)2(C10H8N2)2(H2O)2]·2H2O, the two CoII cations are bridged by pairs of pyridine-2,5-dicarboxyl­ate anions across an inversion center. Besides two pyridine-2,5-dicarboxyl­ate anions, one bidentate 2,2′-bipyridine and one water mol­ecule coordinate to the Co cation, completing a distorted octa­hedral coordination geometry. Within the dinuclear mol­ecule, π–π stacking occurs between parallel pyridine rings with centroid–centroid distances of 3.802 (2) Å. The crystal structure contains extensive O—H⋯O and weak C—H⋯O hydrogen bonds and C—H⋯π inter­actions.

Related literature

For multi-dentate coordination modes of the pyridine-3,5-dicarboxyl­ate anion, see: Gao et al. (2005 ▶). For related structures, see: Aghabozorg et al. (2007 ▶); Lu et al. (2006 ▶); Xu et al. (2004 ▶).graphic file with name e-67-0m278-scheme1.jpg

Experimental

Crystal data

  • [Co2(C7H3NO4)2(C10H8N2)2(H2O)2]·2H2O

  • M r = 832.50

  • Triclinic, Inline graphic

  • a = 7.2731 (11) Å

  • b = 9.7123 (15) Å

  • c = 12.2887 (19) Å

  • α = 98.447 (3)°

  • β = 103.283 (3)°

  • γ = 91.564 (3)°

  • V = 834.0 (2) Å3

  • Z = 1

  • Mo Kα radiation

  • μ = 1.07 mm−1

  • T = 294 K

  • 0.30 × 0.20 × 0.20 mm

Data collection

  • Bruker SMART CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.928, T max = 0.971

  • 4799 measured reflections

  • 2903 independent reflections

  • 2557 reflections with I > 2σ(I)

  • R int = 0.031

Refinement

  • R[F 2 > 2σ(F 2)] = 0.056

  • wR(F 2) = 0.145

  • S = 1.14

  • 2903 reflections

  • 244 parameters

  • H-atom parameters constrained

  • Δρmax = 1.58 e Å−3

  • Δρmin = −0.37 e Å−3

Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811003059/xu5145sup1.cif

e-67-0m278-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811003059/xu5145Isup2.hkl

e-67-0m278-Isup2.hkl (139.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Co1—O1 2.059 (3)
Co1—O2 2.056 (3)
Co1—O5i 2.089 (3)
Co1—N1 2.126 (3)
Co1—N2 2.155 (3)
Co1—N3 2.204 (3)

Symmetry code: (i) Inline graphic.

Table 2. Hydrogen-bond geometry (Å, °).

Cg is the centroid of the N-pyridine ring.

D—H⋯A D—H H⋯A D⋯A D—H⋯A
O1—H1A⋯O3ii 0.84 1.82 2.629 (4) 159
O1—H1B⋯O6 0.88 1.94 2.755 (5) 154
O6—H6A⋯O4iii 0.85 2.40 3.232 (5) 166
O6—H6B⋯O4iv 0.83 2.01 2.829 (5) 170
C4—H4A⋯O2v 0.93 2.52 3.202 (5) 131
C7—H7A⋯O6vi 0.93 2.57 3.332 (6) 140
C8—H8A⋯O4vii 0.93 2.55 3.461 (6) 169
C9—H9A⋯O3viii 0.93 2.59 3.330 (6) 137
C12—H12A⋯O4ix 0.93 2.44 3.317 (5) 158
C15—H15A⋯O3ii 0.93 2.36 3.249 (5) 160
C2—H2A⋯Cgiv 0.93 2.72 3.547 (5) 150

Symmetry codes: (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic; (v) Inline graphic; (vi) Inline graphic; (vii) Inline graphic; (viii) Inline graphic; (ix) Inline graphic.

Acknowledgments

This work was supported financially by Yuanpei University, Taiwan.

supplementary crystallographic information

Comment

2,5-PydH2 can be easily deprotonated to get a O-donors to N-donor multidentate anion (pyd2-), enabling the ligand coordinates to two or more metal ions in a briding mode and chelating mode (Gao et al., 2005). The complexation of metal ions using the deprotonated conjugate base of 2,5-pydH2 as a ligand has been reported in the literature (Aghabozorg et al., 2007; Lu et al., 2006; Xu et al., 2004).

The symmetric unit of the title compound contain two CoII cations, two pyd anions, two bpy molecules and two coordinated water molecules. Each CoII ion is surrounded by one bpy ligand, two pyd anions and one coordinated water molecule, to give a distorted octahedral geometry. Two pyd anions bridges two CoII ions to form a centrosymmetric dimeric complex (Table 1 and Fig. 1).

The crystal structure contains an extensive network of classical O—H···O and weak C—H···O hydrogen bonds (full details and symmetry codes are given in Table 2 and Fig. 2). C—H ···π(full detail and symmetry code is given in Table 2) and π-π stacking are present in the crystal structure, the shortest centroids distance between parallel pyridine rings is 3.8023 (17) Å [Cg5i···Cg5 (N3/C11—C15)] [symmetry code: 1 - x, 1 - y, 1 - z].

Experimental

An aqueous solution (5 ml) of bpy (0.0312 g, 0.20 mmol) was mixed with aqueous solution (5 ml) containing Co(NO3)2.6H2O (0.0450 g, 0.20 mmol) and 2,5-pydH2 (0.0346 g, 0.2 mmol). The mxiture was put in a 23-ml Teflon liner reactor and heated at 418 K in oven for 48 h. The resulting solution was slowly cooled to room temperature. The orange transparent single crystals of the title complex were obtained in 35.5% yield (based on Co).

Refinement

Water H atoms were placed in chemical sensible positions and refined in a riding model. Other H atoms were positioned geometrically with C—H = 0.93 Å and refined using a riding model. Uiso(H) = 1.2Ueq(O,C).

Figures

Fig. 1.

Fig. 1.

View of the title compound with the atom numbering scheme. Displacement ellipsoids for non-H atoms are drawn at the 50% probability level. All H atoms have been omitted for clarity [symmetry code: (i) 1 - x, 1 - y, 1 - z].

Fig. 2.

Fig. 2.

The molecular packing for the title compound. Hydrogen bonds are shown as dashed lines.

Crystal data

[Co2(C7H3NO4)2(C10H8N2)2(H2O)2]·2H2O Z = 1
Mr = 832.50 F(000) = 426
Triclinic, P1 Dx = 1.658 Mg m−3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 7.2731 (11) Å Cell parameters from 2565 reflections
b = 9.7123 (15) Å θ = 2.5–25.0°
c = 12.2887 (19) Å µ = 1.07 mm−1
α = 98.447 (3)° T = 294 K
β = 103.283 (3)° Columnar, orange
γ = 91.564 (3)° 0.30 × 0.20 × 0.20 mm
V = 834.0 (2) Å3

Data collection

Bruker SMART CCD area-detector diffractometer 2903 independent reflections
Radiation source: fine-focus sealed tube 2557 reflections with I > 2σ(I)
graphite Rint = 0.031
Detector resolution: 9 pixels mm-1 θmax = 25.0°, θmin = 1.7°
φ and ω scans h = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2001) k = −11→11
Tmin = 0.928, Tmax = 0.971 l = −14→14
4799 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145 H-atom parameters constrained
S = 1.14 w = 1/[σ2(Fo2) + (0.0875P)2 + 0.435P] where P = (Fo2 + 2Fc2)/3
2903 reflections (Δ/σ)max < 0.001
244 parameters Δρmax = 1.58 e Å−3
0 restraints Δρmin = −0.37 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Co1 0.66185 (7) 0.76879 (5) 0.74280 (4) 0.0247 (2)
O1 0.3772 (4) 0.7870 (3) 0.7328 (2) 0.0354 (7)
H1A 0.2956 0.7189 0.7125 0.042*
H1B 0.3279 0.8561 0.6992 0.042*
O2 0.9431 (4) 0.7317 (3) 0.7591 (2) 0.0364 (7)
O3 1.1448 (4) 0.5714 (3) 0.7242 (3) 0.0435 (8)
O4 0.2217 (4) 0.2111 (3) 0.5635 (3) 0.0432 (8)
O5 0.3331 (4) 0.1622 (3) 0.4098 (2) 0.0381 (7)
O6 0.1195 (5) 0.9586 (4) 0.6300 (3) 0.0535 (9)
H6A 0.0183 0.9165 0.5883 0.064*
H6B 0.1367 1.0315 0.6048 0.064*
N1 0.7131 (5) 0.9779 (3) 0.8284 (3) 0.0295 (7)
N2 0.6948 (5) 0.7464 (3) 0.9180 (3) 0.0305 (8)
N3 0.6456 (4) 0.5456 (3) 0.6717 (3) 0.0254 (7)
C1 0.7223 (7) 1.0907 (5) 0.7791 (4) 0.0396 (10)
H1C 0.7019 1.0789 0.7007 0.047*
C2 0.7609 (7) 1.2242 (5) 0.8393 (4) 0.0466 (12)
H2A 0.7656 1.3007 0.8024 0.056*
C3 0.7921 (7) 1.2406 (5) 0.9552 (4) 0.0464 (12)
H3A 0.8213 1.3288 0.9982 0.056*
C4 0.7800 (6) 1.1259 (5) 1.0069 (4) 0.0378 (10)
H4A 0.7985 1.1362 1.0852 0.045*
C5 0.7403 (5) 0.9954 (4) 0.9422 (3) 0.0282 (9)
C6 0.7270 (5) 0.8659 (4) 0.9919 (3) 0.0289 (9)
C7 0.7501 (7) 0.8667 (5) 1.1072 (4) 0.0415 (11)
H7A 0.7716 0.9507 1.1569 0.050*
C8 0.7409 (7) 0.7430 (6) 1.1474 (4) 0.0481 (12)
H8A 0.7565 0.7422 1.2245 0.058*
C9 0.7083 (7) 0.6200 (5) 1.0724 (4) 0.0465 (12)
H9A 0.7011 0.5346 1.0974 0.056*
C10 0.6866 (7) 0.6277 (5) 0.9595 (4) 0.0391 (10)
H10A 0.6648 0.5446 0.9087 0.047*
C11 0.8176 (5) 0.5074 (4) 0.6603 (3) 0.0262 (8)
C12 0.8460 (6) 0.3818 (4) 0.5996 (4) 0.0325 (9)
H12A 0.9669 0.3591 0.5935 0.039*
C13 0.6905 (6) 0.2898 (4) 0.5480 (3) 0.0310 (9)
H13A 0.7052 0.2058 0.5047 0.037*
C14 0.5124 (5) 0.3253 (4) 0.5620 (3) 0.0247 (8)
C15 0.4972 (5) 0.4536 (4) 0.6248 (3) 0.0248 (8)
H15A 0.3785 0.4771 0.6349 0.030*
C16 0.9822 (5) 0.6112 (4) 0.7197 (3) 0.0286 (9)
C17 0.3412 (6) 0.2256 (4) 0.5075 (3) 0.0275 (9)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Co1 0.0275 (3) 0.0238 (3) 0.0205 (3) −0.0027 (2) 0.0054 (2) −0.0029 (2)
O1 0.0326 (15) 0.0318 (16) 0.0404 (18) −0.0027 (12) 0.0074 (13) 0.0042 (13)
O2 0.0257 (14) 0.0385 (17) 0.0376 (17) −0.0053 (12) 0.0046 (13) −0.0119 (14)
O3 0.0263 (15) 0.0384 (17) 0.062 (2) 0.0004 (13) 0.0085 (15) 0.0009 (15)
O4 0.0427 (18) 0.0408 (18) 0.047 (2) −0.0095 (14) 0.0219 (16) −0.0048 (15)
O5 0.0526 (19) 0.0330 (16) 0.0231 (15) −0.0100 (14) 0.0044 (13) −0.0042 (12)
O6 0.053 (2) 0.0413 (19) 0.059 (2) −0.0054 (15) −0.0058 (17) 0.0152 (17)
N1 0.0346 (18) 0.0271 (18) 0.0251 (18) 0.0008 (14) 0.0071 (15) −0.0010 (14)
N2 0.0353 (18) 0.0274 (18) 0.0269 (18) 0.0000 (14) 0.0065 (15) −0.0002 (14)
N3 0.0274 (16) 0.0267 (17) 0.0220 (17) 0.0018 (13) 0.0066 (13) 0.0023 (13)
C1 0.055 (3) 0.034 (2) 0.029 (2) 0.000 (2) 0.009 (2) 0.0027 (18)
C2 0.066 (3) 0.026 (2) 0.048 (3) 0.003 (2) 0.014 (2) 0.004 (2)
C3 0.057 (3) 0.030 (2) 0.043 (3) −0.001 (2) 0.005 (2) −0.010 (2)
C4 0.045 (3) 0.037 (2) 0.028 (2) 0.0016 (19) 0.006 (2) −0.0040 (18)
C5 0.0266 (19) 0.029 (2) 0.025 (2) 0.0013 (16) 0.0038 (17) −0.0039 (16)
C6 0.030 (2) 0.032 (2) 0.022 (2) 0.0037 (16) 0.0038 (17) −0.0002 (16)
C7 0.055 (3) 0.044 (3) 0.022 (2) 0.005 (2) 0.008 (2) −0.0024 (19)
C8 0.058 (3) 0.062 (3) 0.027 (2) 0.008 (2) 0.010 (2) 0.013 (2)
C9 0.060 (3) 0.044 (3) 0.040 (3) 0.007 (2) 0.014 (2) 0.017 (2)
C10 0.051 (3) 0.035 (2) 0.031 (2) 0.001 (2) 0.010 (2) 0.0042 (19)
C11 0.0253 (19) 0.029 (2) 0.025 (2) −0.0011 (16) 0.0063 (16) 0.0057 (16)
C12 0.029 (2) 0.033 (2) 0.035 (2) 0.0046 (17) 0.0110 (18) 0.0000 (18)
C13 0.034 (2) 0.031 (2) 0.027 (2) 0.0032 (17) 0.0090 (18) −0.0020 (17)
C14 0.032 (2) 0.0254 (19) 0.0160 (18) 0.0002 (16) 0.0051 (16) 0.0036 (15)
C15 0.0251 (19) 0.028 (2) 0.0206 (19) −0.0007 (15) 0.0057 (16) 0.0023 (15)
C16 0.027 (2) 0.035 (2) 0.022 (2) −0.0029 (17) 0.0051 (16) 0.0033 (17)
C17 0.032 (2) 0.0219 (19) 0.027 (2) −0.0009 (16) 0.0059 (17) 0.0020 (16)

Geometric parameters (Å, °)

Co1—O1 2.059 (3) C2—H2A 0.9300
Co1—O2 2.056 (3) C3—C4 1.371 (7)
Co1—O5i 2.089 (3) C3—H3A 0.9300
Co1—N1 2.126 (3) C4—C5 1.379 (6)
Co1—N2 2.155 (3) C4—H4A 0.9300
Co1—N3 2.204 (3) C5—C6 1.487 (6)
O1—H1A 0.8446 C6—C7 1.387 (6)
O1—H1B 0.8808 C7—C8 1.370 (7)
O2—C16 1.265 (5) C7—H7A 0.9300
O3—C16 1.246 (5) C8—C9 1.375 (7)
O4—C17 1.243 (5) C8—H8A 0.9300
O5—C17 1.255 (5) C9—C10 1.374 (6)
O5—Co1i 2.089 (3) C9—H9A 0.9300
O6—H6A 0.8484 C10—H10A 0.9300
O6—H6B 0.8317 C11—C12 1.380 (6)
N1—C1 1.334 (5) C11—C16 1.516 (5)
N1—C5 1.351 (5) C12—C13 1.388 (6)
N2—C10 1.333 (6) C12—H12A 0.9300
N2—C6 1.343 (5) C13—C14 1.391 (5)
N3—C15 1.344 (5) C13—H13A 0.9300
N3—C11 1.347 (5) C14—C15 1.388 (5)
C1—C2 1.382 (6) C14—C17 1.515 (5)
C1—H1C 0.9300 C15—H15A 0.9300
C2—C3 1.374 (7)
O2—Co1—O1 174.08 (12) C5—C4—H4A 120.2
O2—Co1—O5i 87.58 (13) N1—C5—C4 121.3 (4)
O1—Co1—O5i 96.94 (12) N1—C5—C6 115.8 (3)
O2—Co1—N1 95.03 (12) C4—C5—C6 122.9 (4)
O1—Co1—N1 88.82 (12) N2—C6—C7 121.6 (4)
O5i—Co1—N1 89.97 (12) N2—C6—C5 115.7 (3)
O2—Co1—N2 88.54 (13) C7—C6—C5 122.7 (4)
O1—Co1—N2 87.96 (12) C8—C7—C6 119.5 (4)
O5i—Co1—N2 165.79 (12) C8—C7—H7A 120.2
N1—Co1—N2 76.76 (13) C6—C7—H7A 120.2
O2—Co1—N3 78.33 (11) C7—C8—C9 119.3 (4)
O1—Co1—N3 97.44 (12) C7—C8—H8A 120.3
O5i—Co1—N3 94.61 (12) C9—C8—H8A 120.3
N1—Co1—N3 171.73 (12) C10—C9—C8 117.8 (4)
N2—Co1—N3 97.98 (12) C10—C9—H9A 121.1
Co1—O1—H1A 123.8 C8—C9—H9A 121.1
Co1—O1—H1B 115.0 N2—C10—C9 124.2 (4)
H1A—O1—H1B 106.9 N2—C10—H10A 117.9
C16—O2—Co1 117.4 (2) C9—C10—H10A 117.9
C17—O5—Co1i 132.6 (3) N3—C11—C12 123.1 (4)
H6A—O6—H6B 107.3 N3—C11—C16 115.7 (3)
C1—N1—C5 118.4 (4) C12—C11—C16 121.2 (3)
C1—N1—Co1 125.5 (3) C11—C12—C13 118.8 (4)
C5—N1—Co1 116.1 (3) C11—C12—H12A 120.6
C10—N2—C6 117.5 (4) C13—C12—H12A 120.6
C10—N2—Co1 126.9 (3) C12—C13—C14 119.1 (4)
C6—N2—Co1 115.6 (3) C12—C13—H13A 120.5
C15—N3—C11 117.5 (3) C14—C13—H13A 120.5
C15—N3—Co1 131.7 (3) C15—C14—C13 118.3 (4)
C11—N3—Co1 109.8 (2) C15—C14—C17 121.9 (3)
N1—C1—C2 123.0 (4) C13—C14—C17 119.9 (3)
N1—C1—H1C 118.5 N3—C15—C14 123.2 (3)
C2—C1—H1C 118.5 N3—C15—H15A 118.4
C3—C2—C1 118.1 (4) C14—C15—H15A 118.4
C3—C2—H2A 120.9 O3—C16—O2 125.4 (4)
C1—C2—H2A 120.9 O3—C16—C11 117.3 (4)
C4—C3—C2 119.5 (4) O2—C16—C11 117.3 (3)
C4—C3—H3A 120.2 O4—C17—O5 125.1 (4)
C2—C3—H3A 120.2 O4—C17—C14 117.8 (3)
C3—C4—C5 119.6 (4) O5—C17—C14 117.1 (3)
C3—C4—H4A 120.2

Symmetry codes: (i) −x+1, −y+1, −z+1.

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the N-pyridine ring.
D—H···A D—H H···A D···A D—H···A
O1—H1A···O3ii 0.84 1.82 2.629 (4) 159
O1—H1B···O6 0.88 1.94 2.755 (5) 154
O6—H6A···O4iii 0.85 2.40 3.232 (5) 166
O6—H6B···O4iv 0.83 2.01 2.829 (5) 170
C4—H4A···O2v 0.93 2.52 3.202 (5) 131
C7—H7A···O6vi 0.93 2.57 3.332 (6) 140
C8—H8A···O4vii 0.93 2.55 3.461 (6) 169
C9—H9A···O3viii 0.93 2.59 3.330 (6) 137
C12—H12A···O4ix 0.93 2.44 3.317 (5) 158
C15—H15A···O3ii 0.93 2.36 3.249 (5) 160
C2—H2A···Cgiv 0.93 2.72 3.547 (5) 150

Symmetry codes: (ii) x−1, y, z; (iii) −x, −y+1, −z+1; (iv) x, y+1, z; (v) −x+2, −y+2, −z+2; (vi) −x+1, −y+2, −z+2; (vii) −x+1, −y+1, −z+2; (viii) −x+2, −y+1, −z+2; (ix) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5145).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811003059/xu5145sup1.cif

e-67-0m278-sup1.cif (18.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811003059/xu5145Isup2.hkl

e-67-0m278-Isup2.hkl (139.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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