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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jan 29;67(Pt 2):o513. doi: 10.1107/S1600536811001267

[1-(Carb­oxy­meth­yl)cyclo­hex­yl]methanaminium nitrate

Elise J C de Vries a,*, Caryn Gamble a, Ahmed Shaikjee a
PMCID: PMC3051645  PMID: 21523164

Abstract

The title compound, C9H18NO2 +·NO3 , is an anhydrous nitrate salt of gabapentin, which is formed serendipitously in the presence of selected non-coordinating metals. The crystal structure involves extensive hydrogen bonding between the –NH3 + and –COOH groups and the nitrate anion.

Related literature

For related structures, see: Ibers (2001); Ananda et al. (2003); Reece & Levendis (2008); Braga et al. (2008); Fabbiani et al. (2010). For the role of γ-amino­butyric acid (GABA) as an inhibitory neurotransmitter, see: Bowery (1993). Gabapentin is used as a neuroleptic drug in the treatment of epilepsy (Taylor, 1993) but its applications have been extended to the treatment of neuropathic pain (Magnus, 1999).graphic file with name e-67-0o513-scheme1.jpg

Experimental

Crystal data

  • C9H18NO2 +·NO3

  • M r = 234.25

  • Orthorhombic, Inline graphic

  • a = 8.1743 (8) Å

  • b = 11.5945 (11) Å

  • c = 12.0396 (9) Å

  • V = 1141.08 (18) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.11 mm−1

  • T = 173 K

  • 0.65 × 0.15 × 0.14 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • 5654 measured reflections

  • 1448 independent reflections

  • 1278 reflections with I > 2σ(I)

  • R int = 0.044

Refinement

  • R[F 2 > 2σ(F 2)] = 0.033

  • wR(F 2) = 0.084

  • S = 1.06

  • 1448 reflections

  • 146 parameters

  • H-atom parameters constrained

  • Δρmax = 0.22 e Å−3

  • Δρmin = −0.14 e Å−3

Data collection: APEX2 (Bruker, 2005); cell refinement: SAINT-NT (Bruker, 2005); data reduction: SAINT-NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001; Atwood & Barbour, 2003); software used to prepare material for publication: X-SEED.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811001267/pb2049sup1.cif

e-67-0o513-sup1.cif (21.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001267/pb2049Isup2.hkl

e-67-0o513-Isup2.hkl (70KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1A⋯O5i 0.91 2.02 2.828 (2) 147
N1—H1A⋯O4i 0.91 2.41 3.215 (2) 147
N1—H1A⋯N2i 0.91 2.58 3.465 (3) 164
N1—H1B⋯O4ii 0.91 2.06 2.951 (3) 168
N1—H1B⋯O3ii 0.91 2.47 3.022 (2) 119
N1—H1B⋯N2ii 0.91 2.60 3.390 (3) 146
N1—H1C⋯O1 0.91 1.90 2.760 (2) 157
O2—H2C⋯O5 0.84 1.81 2.646 (2) 175
O2—H2C⋯N2 0.84 2.60 3.376 (2) 154

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors would like to thank the National Research Foundation of South Africa and the University of the Witwatersrand for financial support. EJCV would like to acknowledge Dr M. Fernandes for informative discussions and advice.

supplementary crystallographic information

Comment

The role of γ-aminobutyric acid (GABA) as an inhibitory neurotransmitter (Bowery, 1993) has stimulated research on the synthesis of GABA analogues as potential central nervous system agents. One of these analogues is the amino acid gabapentin [1-(aminomethyl)cyclohexaneacetic acid] which is commercially available as Neurotin. Gabapentin is used as a neuroleptic drug in the treatment of epilepsy (Taylor, 1993) but its applications have been extended to the treatment of neuropathic pain (Magnus, 1999). Gabapentin is widely studied and already four polymorphic forms of the drug are known, three polymorphic forms under ambient conditions (Ibers, 2001; Reece and Levendis, 2008; Braga et al., 2008) and a fourth at high pressure (Fabbiani et al., 2010). The present paper reports on the formation of an anhydrous gabapentin nitrate salt, complex (I).

Complex (I) was obtained serendipitously when investigating the possibility of producing novel metal complexes with gabapentin. Lithium-, chromium-, indium-, iron- and aluminium nitrate were used in an attempt to make metal complexes. However analysis of the crystalline materials revealed a gabapentin nitrate salt was obtained in each case. The atomic numbering scheme of the gabapentin nitrate complex, C9H18NO2+.NO3-, is shown in Fig. 1. Complex (I) crystallizes in the orthorhombic space group P212121 with a protonated amine group. The cyclohexane ring is in the chair conformation with the ammonium group in the equatorial position. The conformation of the gabapentin molecule is defined by the formation of an intramolecular hydrogen bond between the carboxylate oxygen and one of the hydrogen atoms belonging to the ammonium group (N1—H1C···O1). The crystal packing shows how each nitrate anion links to three adjacent molecules by means of one O—H···O, four N—H···O, two N—H···N and one O—H···N hydrogen-bonding interactions. The donors are the H atoms of the carboxylic acid and amine group, while the acceptors include all three O atoms of the nitrate anion (Fig. 2). Additionally, one nitrate O atom is involved in a weak hydrogen bonding interaction with a symmetry related carbon atom, with a C9—H9B···O3 distance of 3.317 (3) Å and angle of 149°.

Experimental

Gabapentin was purchased from Sigma-Aldrich. The gabapentin nitrate salt is formed serendipitously by combining gabapentin with one of the following metal salts in 1:1 stoichiometric ratios; lithium-, chromium-, indium-, iron- and aluminium nitrate. The metal salt and gabapentin were dissolved in 0.1 molar nitric acid and allowed to undergo slow evaporation at ambient temperature. It was noted that this complex did not form if the metal salt was removed from the reaction.

Refinement

All H atoms were positioned geometrically and allowed to ride on their respective parent atoms, with C—H bond lengths of 0.99 (aromatic CH) 1.00 (methine CH), 0.99 (methylene CH2) and 0.98 Å (methyl CH3), and with Uiso(H) = 1.2 or 1.5 times Ueq(C). In the absence of significant anomalous scattering, Friedel equivalents were merged before the final refinement.

Figures

Fig. 1.

Fig. 1.

The atomic numbering scheme of complex (I). Displacement ellipsoids are drawn at 50% probability level.

Fig. 2.

Fig. 2.

Projection of the unit cell of complex (I) down the a axis. All hydrogen atoms removed, except those involved in hydrogen bonding. Hydrogen bonds are indicated as dashed lines.

Crystal data

C9H18NO2+·NO3 F(000) = 504
Mr = 234.25 Dx = 1.364 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 1858 reflections
a = 8.1743 (8) Å θ = 3.0–25.8°
b = 11.5945 (11) Å µ = 0.11 mm1
c = 12.0396 (9) Å T = 173 K
V = 1141.08 (18) Å3 Plate, colourless
Z = 4 0.65 × 0.15 × 0.14 mm

Data collection

Bruker APEXII CCD diffractometer 1278 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.044
graphite θmax = 27.0°, θmin = 2.4°
φ and ω scans h = −10→8
5654 measured reflections k = −12→14
1448 independent reflections l = −13→15

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0451P)2 + 0.0272P] where P = (Fo2 + 2Fc2)/3
1448 reflections (Δ/σ)max < 0.001
146 parameters Δρmax = 0.22 e Å3
0 restraints Δρmin = −0.14 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.5335 (2) 0.08869 (17) 0.35572 (15) 0.0209 (4)
C2 0.3870 (2) 0.03596 (17) 0.41650 (16) 0.0221 (4)
H2A 0.4250 0.0031 0.4879 0.026*
H2B 0.3076 0.0979 0.4337 0.026*
C3 0.3003 (3) −0.0580 (2) 0.35067 (17) 0.0301 (5)
H3B 0.2046 −0.0860 0.3932 0.036*
H3A 0.3756 −0.1238 0.3393 0.036*
C4 0.2437 (3) −0.0124 (2) 0.23826 (18) 0.0369 (6)
H4B 0.1597 0.0480 0.2497 0.044*
H4A 0.1931 −0.0759 0.1953 0.044*
C5 0.3869 (3) 0.0380 (2) 0.17244 (17) 0.0354 (6)
H5A 0.4643 −0.0246 0.1530 0.042*
H5B 0.3456 0.0721 0.1025 0.042*
C6 0.4764 (3) 0.13032 (18) 0.23945 (16) 0.0272 (5)
H6B 0.4031 0.1975 0.2490 0.033*
H6A 0.5732 0.1564 0.1968 0.033*
C7 0.5943 (3) 0.19806 (17) 0.41759 (16) 0.0255 (5)
H7A 0.6985 0.2230 0.3833 0.031*
H7B 0.5136 0.2605 0.4055 0.031*
C8 0.6213 (3) 0.18538 (18) 0.54059 (17) 0.0243 (5)
C9 0.6729 (3) 0.0019 (2) 0.33743 (16) 0.0273 (5)
H9A 0.6386 −0.0538 0.2797 0.033*
H9B 0.7694 0.0440 0.3086 0.033*
N1 0.7225 (2) −0.06315 (16) 0.43807 (14) 0.0290 (4)
H1A 0.8126 −0.1063 0.4226 0.043*
H1B 0.6393 −0.1103 0.4596 0.043*
H1C 0.7460 −0.0128 0.4938 0.043*
O1 0.7213 (2) 0.12161 (14) 0.58267 (12) 0.0343 (4)
O2 0.5264 (2) 0.25326 (14) 0.59950 (11) 0.0325 (4)
H2C 0.5456 0.2434 0.6674 0.039*
N2 0.4911 (2) 0.27445 (15) 0.87814 (13) 0.0245 (4)
O3 0.3960 (2) 0.34667 (14) 0.84059 (13) 0.0397 (4)
O4 0.5086 (2) 0.26085 (14) 0.97989 (11) 0.0351 (4)
O5 0.5740 (2) 0.21168 (14) 0.81312 (11) 0.0333 (4)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.0231 (11) 0.0206 (10) 0.0191 (9) −0.0003 (8) 0.0014 (8) 0.0006 (7)
C2 0.0206 (10) 0.0232 (10) 0.0224 (9) 0.0005 (9) 0.0021 (8) 0.0002 (8)
C3 0.0306 (12) 0.0289 (12) 0.0307 (11) −0.0083 (10) −0.0026 (10) 0.0029 (9)
C4 0.0397 (14) 0.0353 (13) 0.0358 (13) −0.0083 (12) −0.0138 (10) −0.0028 (10)
C5 0.0492 (15) 0.0355 (13) 0.0215 (10) −0.0054 (12) −0.0070 (10) 0.0010 (9)
C6 0.0330 (13) 0.0274 (11) 0.0212 (10) −0.0035 (10) −0.0009 (9) 0.0051 (8)
C7 0.0265 (11) 0.0211 (10) 0.0288 (11) −0.0043 (9) −0.0007 (9) 0.0025 (8)
C8 0.0220 (11) 0.0213 (10) 0.0297 (11) −0.0052 (9) −0.0004 (9) −0.0016 (8)
C9 0.0294 (11) 0.0283 (12) 0.0241 (10) 0.0030 (10) 0.0062 (9) 0.0031 (9)
N1 0.0279 (10) 0.0273 (10) 0.0318 (10) 0.0078 (8) 0.0056 (8) 0.0008 (8)
O1 0.0364 (10) 0.0356 (9) 0.0307 (8) 0.0084 (8) −0.0063 (7) −0.0017 (7)
O2 0.0340 (9) 0.0381 (9) 0.0254 (7) 0.0089 (8) −0.0028 (6) −0.0040 (6)
N2 0.0241 (10) 0.0224 (9) 0.0268 (9) −0.0001 (8) −0.0017 (7) 0.0001 (7)
O3 0.0399 (10) 0.0424 (10) 0.0369 (9) 0.0201 (9) −0.0004 (8) 0.0076 (7)
O4 0.0458 (10) 0.0381 (9) 0.0214 (7) 0.0065 (8) −0.0056 (7) −0.0010 (7)
O5 0.0353 (9) 0.0357 (9) 0.0288 (8) 0.0143 (8) −0.0002 (7) −0.0053 (7)

Geometric parameters (Å, °)

C1—C2 1.531 (3) C6—H6A 0.9900
C1—C9 1.536 (3) C7—C8 1.504 (3)
C1—C7 1.552 (3) C7—H7A 0.9900
C1—C6 1.552 (3) C7—H7B 0.9900
C2—C3 1.522 (3) C8—O1 1.214 (3)
C2—H2A 0.9900 C8—O2 1.313 (3)
C2—H2B 0.9900 C9—N1 1.484 (3)
C3—C4 1.525 (3) C9—H9A 0.9900
C3—H3B 0.9900 C9—H9B 0.9900
C3—H3A 0.9900 N1—H1A 0.9100
C4—C5 1.530 (3) N1—H1B 0.9100
C4—H4B 0.9900 N1—H1C 0.9100
C4—H4A 0.9900 O2—H2C 0.8400
C5—C6 1.528 (3) N2—O3 1.229 (2)
C5—H5A 0.9900 N2—O4 1.243 (2)
C5—H5B 0.9900 N2—O5 1.266 (2)
C6—H6B 0.9900
C2—C1—C9 112.79 (16) C5—C6—H6B 108.8
C2—C1—C7 110.32 (16) C1—C6—H6B 108.8
C9—C1—C7 111.50 (17) C5—C6—H6A 108.8
C2—C1—C6 108.67 (17) C1—C6—H6A 108.8
C9—C1—C6 107.29 (16) H6B—C6—H6A 107.7
C7—C1—C6 105.95 (16) C8—C7—C1 116.07 (16)
C3—C2—C1 113.65 (16) C8—C7—H7A 108.3
C3—C2—H2A 108.8 C1—C7—H7A 108.3
C1—C2—H2A 108.8 C8—C7—H7B 108.3
C3—C2—H2B 108.8 C1—C7—H7B 108.3
C1—C2—H2B 108.8 H7A—C7—H7B 107.4
H2A—C2—H2B 107.7 O1—C8—O2 122.55 (19)
C2—C3—C4 110.82 (19) O1—C8—C7 124.7 (2)
C2—C3—H3B 109.5 O2—C8—C7 112.73 (19)
C4—C3—H3B 109.5 N1—C9—C1 114.76 (16)
C2—C3—H3A 109.5 N1—C9—H9A 108.6
C4—C3—H3A 109.5 C1—C9—H9A 108.6
H3B—C3—H3A 108.1 N1—C9—H9B 108.6
C3—C4—C5 111.1 (2) C1—C9—H9B 108.6
C3—C4—H4B 109.4 H9A—C9—H9B 107.6
C5—C4—H4B 109.4 C9—N1—H1A 109.5
C3—C4—H4A 109.4 C9—N1—H1B 109.5
C5—C4—H4A 109.4 H1A—N1—H1B 109.5
H4B—C4—H4A 108.0 C9—N1—H1C 109.5
C6—C5—C4 111.14 (18) H1A—N1—H1C 109.5
C6—C5—H5A 109.4 H1B—N1—H1C 109.5
C4—C5—H5A 109.4 C8—O2—H2C 109.5
C6—C5—H5B 109.4 O3—N2—O4 121.46 (18)
C4—C5—H5B 109.4 O3—N2—O5 120.20 (16)
H5A—C5—H5B 108.0 O4—N2—O5 118.34 (18)
C5—C6—C1 113.72 (17)
C9—C1—C2—C3 −65.3 (2) C7—C1—C6—C5 −170.79 (19)
C7—C1—C2—C3 169.32 (17) C2—C1—C7—C8 49.5 (2)
C6—C1—C2—C3 53.6 (2) C9—C1—C7—C8 −76.7 (2)
C1—C2—C3—C4 −56.9 (3) C6—C1—C7—C8 166.91 (19)
C2—C3—C4—C5 56.0 (3) C1—C7—C8—O1 63.3 (3)
C3—C4—C5—C6 −54.9 (3) C1—C7—C8—O2 −118.1 (2)
C4—C5—C6—C1 54.1 (3) C2—C1—C9—N1 −49.7 (2)
C2—C1—C6—C5 −52.2 (2) C7—C1—C9—N1 75.1 (2)
C9—C1—C6—C5 70.0 (2) C6—C1—C9—N1 −169.31 (18)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N1—H1A···O5i 0.91 2.02 2.828 (2) 147
N1—H1A···O4i 0.91 2.41 3.215 (2) 147
N1—H1A···N2i 0.91 2.58 3.465 (3) 164
N1—H1B···O4ii 0.91 2.06 2.951 (3) 168
N1—H1B···O3ii 0.91 2.47 3.022 (2) 119
N1—H1B···N2ii 0.91 2.60 3.390 (3) 146
N1—H1C···O1 0.91 1.90 2.760 (2) 157
O2—H2C···O5 0.84 1.81 2.646 (2) 175
O2—H2C···N2 0.84 2.60 3.376 (2) 154

Symmetry codes: (i) −x+3/2, −y, z−1/2; (ii) −x+1, y−1/2, −z+3/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PB2049).

References

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  6. Bruker (2005). APEX2 and SAINT-NT Bruker AXS Inc., Madison, Wisconsin, USA.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811001267/pb2049sup1.cif

e-67-0o513-sup1.cif (21.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001267/pb2049Isup2.hkl

e-67-0o513-Isup2.hkl (70KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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