Abstract
In the crystal structure of the title compound, C14H9F6NO3, molecules are connected by intermolecular C—H⋯O hydrogen bonds. The best planes through the benzene and pyridyl rings make a dihedral angle of 1.59 (12)°.
Related literature
The title compound is an important organic synthesis intermediate. For the synthetic procedure, see: Lilienkampf et al. (2009 ▶). For bond-length data, see: Allen et al. (1987 ▶).
Experimental
Crystal data
C14H9F6NO3
M r = 353.22
Monoclinic,
a = 4.6980 (9) Å
b = 20.549 (4) Å
c = 15.176 (3) Å
β = 95.74 (3)°
V = 1457.7 (5) Å3
Z = 4
Mo Kα radiation
μ = 0.16 mm−1
T = 293 K
0.30 × 0.20 × 0.10 mm
Data collection
Enraf–Nonius CAD-4 diffractometer
Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.953, T max = 0.984
3017 measured reflections
2676 independent reflections
1747 reflections with I > 2σ(I)
R int = 0.019
3 standard reflections every 200 reflections intensity decay: 1%
Refinement
R[F 2 > 2σ(F 2)] = 0.051
wR(F 2) = 0.146
S = 1.01
2676 reflections
217 parameters
H-atom parameters constrained
Δρmax = 0.30 e Å−3
Δρmin = −0.24 e Å−3
Data collection: CAD-4 Software (Enraf–Nonius, 1985 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811000328/vm2070sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811000328/vm2070Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C12—H12B⋯O2i | 0.97 | 2.54 | 3.448 (4) | 156 |
Symmetry code: (i)
.
Acknowledgments
This work was supported by the Natural Science Fund for Colleges and Universities in Jiangsu Province (09kjd150011). The authors thank the Center of Testing and Analysis, Nanjing University, for help with the data collection.
supplementary crystallographic information
Comment
The title compound, methyl 2-((2,8-bis(trifluoromethyl)quinolin-4-yl)oxy)acetate is an important intermediate for the synthesis of drugs (Lilienkampf et al., 2009). Here we report the crystal structure of the title compound, (I).
The molecular structure of (I) is shown in Fig. 1. The bond lengths and angles are within normal ranges (Allen et al., 1987).
The phenyl ring and pyridyl ring are nearly coplanar as indicated by the dihedral angle of 1.59 (12) ° between the best planes through both rings.
The molecules show C—H···O and C—H···F intermolecular and intramolecular hydrogen bonds (Table 1) resulting in a three dimensional network, which seems to be very effective in the stabilization of the crystal structure (Fig. 2).
Experimental
The title compound, (I) was prepared by a method reported in literature (Lilienkampf et al., 2009). The crystals were obtained by dissolving (I) (0.5 g, 1.42 mmol) in ethanol (25 ml) and evaporating the solvent slowly at room temperature for about 5 d.
Refinement
All H atoms were positioned geometrically and constrained to ride on their parent atoms, with C—H = 0.93/0.96/0.97 Å for aromatic, methyl and methylene H atoms, respectively, and with Uiso(H) = xUeq(C), where x = 1.2 for aromatic H, and x = 1.5 for other H atoms .
Figures
Fig. 1.
Molecular structure of title compound (I) with atom-numbering scheme. Displacement ellipsoids are drawn at the 40% probability level. Hydrogen bonds are shown by dashed lines.
Fig. 2.
A packing diagram for (I). C—H···O and C—H···F hydrogen bonds are shown by dashed lines.
Crystal data
| C14H9F6NO3 | F(000) = 712 |
| Mr = 353.22 | Dx = 1.609 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
| a = 4.6980 (9) Å | θ = 9–13° |
| b = 20.549 (4) Å | µ = 0.16 mm−1 |
| c = 15.176 (3) Å | T = 293 K |
| β = 95.74 (3)° | Block, colourless |
| V = 1457.7 (5) Å3 | 0.30 × 0.20 × 0.10 mm |
| Z = 4 |
Data collection
| Enraf–Nonius CAD-4 diffractometer | 1747 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.019 |
| graphite | θmax = 25.3°, θmin = 1.7° |
| ω/2θ scans | h = 0→5 |
| Absorption correction: ψ scan (North et al., 1968) | k = 0→24 |
| Tmin = 0.953, Tmax = 0.984 | l = −18→18 |
| 3017 measured reflections | 3 standard reflections every 200 reflections |
| 2676 independent reflections | intensity decay: 1% |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.146 | H-atom parameters constrained |
| S = 1.01 | w = 1/[σ2(Fo2) + (0.080P)2] where P = (Fo2 + 2Fc2)/3 |
| 2676 reflections | (Δ/σ)max < 0.001 |
| 217 parameters | Δρmax = 0.30 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N | 0.6586 (4) | 0.29913 (10) | 0.42412 (14) | 0.0383 (5) | |
| O1 | 0.5803 (5) | 0.19700 (9) | 0.65680 (13) | 0.0594 (6) | |
| C1 | 0.2049 (6) | 0.40690 (14) | 0.5400 (2) | 0.0526 (7) | |
| H1A | 0.1174 | 0.4474 | 0.5322 | 0.063* | |
| C2 | 0.1686 (6) | 0.37110 (15) | 0.61581 (19) | 0.0589 (8) | |
| H2A | 0.0538 | 0.3874 | 0.6572 | 0.071* | |
| O2 | 0.3296 (6) | 0.08697 (12) | 0.58771 (19) | 0.0863 (8) | |
| C3 | 0.2985 (6) | 0.31288 (14) | 0.62992 (19) | 0.0504 (7) | |
| H3A | 0.2751 | 0.2896 | 0.6813 | 0.060* | |
| O3 | 0.6519 (6) | 0.02604 (12) | 0.66729 (19) | 0.0956 (9) | |
| C4 | 0.4696 (5) | 0.28728 (13) | 0.56703 (17) | 0.0397 (6) | |
| F4 | 0.7603 (4) | 0.18242 (10) | 0.30737 (13) | 0.0839 (7) | |
| F5 | 1.1459 (4) | 0.17660 (9) | 0.39252 (12) | 0.0840 (7) | |
| C5 | 0.5037 (5) | 0.32214 (11) | 0.48869 (16) | 0.0367 (6) | |
| F6 | 1.0470 (4) | 0.26159 (9) | 0.31789 (13) | 0.0773 (6) | |
| C6 | 0.3659 (5) | 0.38388 (11) | 0.47696 (17) | 0.0398 (6) | |
| C7 | 0.6128 (6) | 0.22650 (13) | 0.57896 (17) | 0.0436 (6) | |
| C8 | 0.7689 (6) | 0.20394 (12) | 0.51395 (17) | 0.0445 (7) | |
| H8A | 0.8646 | 0.1643 | 0.5198 | 0.053* | |
| C9 | 0.7797 (5) | 0.24217 (12) | 0.43878 (16) | 0.0390 (6) | |
| C10 | 0.9331 (6) | 0.21592 (13) | 0.36447 (18) | 0.0453 (7) | |
| C11 | 0.3985 (6) | 0.42315 (13) | 0.39586 (19) | 0.0462 (7) | |
| C12 | 0.7187 (7) | 0.13683 (16) | 0.6768 (2) | 0.0603 (8) | |
| H12A | 0.7505 | 0.1314 | 0.7406 | 0.072* | |
| H12B | 0.9034 | 0.1365 | 0.6534 | 0.072* | |
| C13 | 0.5397 (8) | 0.08173 (16) | 0.6375 (2) | 0.0637 (9) | |
| C14 | 0.4960 (10) | −0.0321 (2) | 0.6392 (3) | 0.1169 (16) | |
| H14A | 0.5940 | −0.0695 | 0.6652 | 0.175* | |
| H14B | 0.4832 | −0.0354 | 0.5759 | 0.175* | |
| H14C | 0.3070 | −0.0301 | 0.6580 | 0.175* | |
| F1 | 0.2699 (4) | 0.48154 (8) | 0.39902 (12) | 0.0684 (5) | |
| F2 | 0.6694 (3) | 0.43562 (7) | 0.38446 (11) | 0.0572 (5) | |
| F3 | 0.2832 (3) | 0.39444 (8) | 0.32177 (11) | 0.0619 (5) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N | 0.0317 (11) | 0.0390 (12) | 0.0447 (12) | −0.0009 (9) | 0.0068 (9) | −0.0036 (10) |
| O1 | 0.0794 (15) | 0.0544 (12) | 0.0462 (11) | 0.0071 (11) | 0.0160 (10) | 0.0103 (9) |
| C1 | 0.0458 (16) | 0.0528 (17) | 0.0594 (19) | 0.0093 (13) | 0.0070 (14) | −0.0120 (14) |
| C2 | 0.0570 (19) | 0.068 (2) | 0.0536 (18) | 0.0110 (16) | 0.0174 (15) | −0.0152 (16) |
| O2 | 0.0896 (19) | 0.0781 (17) | 0.0894 (18) | −0.0053 (15) | −0.0004 (16) | −0.0006 (14) |
| C3 | 0.0475 (16) | 0.0623 (19) | 0.0426 (15) | −0.0016 (14) | 0.0108 (13) | −0.0029 (13) |
| O3 | 0.120 (2) | 0.0559 (15) | 0.113 (2) | 0.0237 (15) | 0.0212 (18) | 0.0158 (14) |
| C4 | 0.0316 (13) | 0.0459 (14) | 0.0418 (14) | −0.0052 (11) | 0.0050 (11) | −0.0066 (12) |
| F4 | 0.0720 (12) | 0.1071 (16) | 0.0741 (13) | −0.0201 (11) | 0.0146 (10) | −0.0478 (11) |
| F5 | 0.0813 (14) | 0.0987 (15) | 0.0746 (13) | 0.0501 (12) | 0.0215 (11) | 0.0041 (11) |
| C5 | 0.0287 (12) | 0.0400 (13) | 0.0419 (14) | −0.0010 (11) | 0.0061 (11) | −0.0073 (11) |
| F6 | 0.0927 (14) | 0.0688 (12) | 0.0784 (13) | 0.0018 (10) | 0.0485 (11) | 0.0007 (10) |
| C6 | 0.0294 (13) | 0.0383 (14) | 0.0508 (15) | −0.0013 (11) | −0.0004 (11) | −0.0063 (12) |
| C7 | 0.0433 (15) | 0.0463 (15) | 0.0405 (15) | −0.0025 (12) | 0.0014 (12) | 0.0038 (12) |
| C8 | 0.0471 (15) | 0.0401 (14) | 0.0461 (16) | 0.0037 (12) | 0.0040 (12) | −0.0003 (12) |
| C9 | 0.0324 (13) | 0.0417 (14) | 0.0429 (15) | −0.0031 (11) | 0.0041 (11) | −0.0037 (12) |
| C10 | 0.0442 (15) | 0.0437 (15) | 0.0483 (16) | 0.0059 (13) | 0.0072 (13) | −0.0044 (13) |
| C11 | 0.0364 (14) | 0.0446 (15) | 0.0579 (18) | 0.0025 (12) | 0.0062 (13) | −0.0012 (13) |
| C12 | 0.0614 (19) | 0.066 (2) | 0.0537 (18) | 0.0093 (16) | 0.0076 (15) | 0.0166 (16) |
| C13 | 0.078 (2) | 0.061 (2) | 0.055 (2) | 0.0157 (18) | 0.0226 (19) | 0.0079 (16) |
| C14 | 0.138 (4) | 0.072 (3) | 0.142 (4) | 0.001 (3) | 0.021 (3) | −0.003 (3) |
| F1 | 0.0688 (12) | 0.0480 (10) | 0.0911 (13) | 0.0169 (8) | 0.0205 (10) | 0.0105 (9) |
| F2 | 0.0416 (9) | 0.0577 (10) | 0.0730 (11) | −0.0068 (7) | 0.0090 (8) | 0.0047 (8) |
| F3 | 0.0648 (11) | 0.0651 (11) | 0.0537 (10) | −0.0066 (9) | −0.0046 (9) | 0.0042 (8) |
Geometric parameters (Å, °)
| N—C9 | 1.311 (3) | F5—C10 | 1.322 (3) |
| N—C5 | 1.362 (3) | C5—C6 | 1.428 (3) |
| O1—C7 | 1.350 (3) | F6—C10 | 1.320 (3) |
| O1—C12 | 1.416 (4) | C6—C11 | 1.492 (4) |
| C1—C6 | 1.362 (4) | C7—C8 | 1.368 (4) |
| C1—C2 | 1.391 (4) | C8—C9 | 1.390 (3) |
| C1—H1A | 0.9300 | C8—H8A | 0.9300 |
| C2—C3 | 1.350 (4) | C9—C10 | 1.498 (3) |
| C2—H2A | 0.9300 | C11—F2 | 1.327 (3) |
| O2—C13 | 1.186 (4) | C11—F3 | 1.336 (3) |
| C3—C4 | 1.410 (4) | C11—F1 | 1.346 (3) |
| C3—H3A | 0.9300 | C12—C13 | 1.498 (5) |
| O3—C13 | 1.321 (4) | C12—H12A | 0.9700 |
| O3—C14 | 1.443 (5) | C12—H12B | 0.9700 |
| C4—C5 | 1.411 (4) | C14—H14A | 0.9600 |
| C4—C7 | 1.421 (4) | C14—H14B | 0.9600 |
| F4—C10 | 1.320 (3) | C14—H14C | 0.9600 |
| C9—N—C5 | 116.2 (2) | C8—C9—C10 | 118.3 (2) |
| C7—O1—C12 | 119.4 (2) | F6—C10—F4 | 106.0 (2) |
| C6—C1—C2 | 121.3 (3) | F6—C10—F5 | 105.8 (2) |
| C6—C1—H1A | 119.3 | F4—C10—F5 | 106.7 (2) |
| C2—C1—H1A | 119.3 | F6—C10—C9 | 113.5 (2) |
| C3—C2—C1 | 120.6 (3) | F4—C10—C9 | 111.8 (2) |
| C3—C2—H2A | 119.7 | F5—C10—C9 | 112.5 (2) |
| C1—C2—H2A | 119.7 | F2—C11—F3 | 106.8 (2) |
| C2—C3—C4 | 120.2 (3) | F2—C11—F1 | 105.8 (2) |
| C2—C3—H3A | 119.9 | F3—C11—F1 | 106.1 (2) |
| C4—C3—H3A | 119.9 | F2—C11—C6 | 113.0 (2) |
| C13—O3—C14 | 116.3 (3) | F3—C11—C6 | 112.9 (2) |
| C3—C4—C5 | 120.1 (2) | F1—C11—C6 | 111.7 (2) |
| C3—C4—C7 | 122.4 (2) | O1—C12—C13 | 110.3 (2) |
| C5—C4—C7 | 117.5 (2) | O1—C12—H12A | 109.6 |
| N—C5—C4 | 122.9 (2) | C13—C12—H12A | 109.6 |
| N—C5—C6 | 119.1 (2) | O1—C12—H12B | 109.6 |
| C4—C5—C6 | 117.9 (2) | C13—C12—H12B | 109.6 |
| C1—C6—C5 | 119.9 (3) | H12A—C12—H12B | 108.1 |
| C1—C6—C11 | 120.1 (2) | O2—C13—O3 | 125.1 (4) |
| C5—C6—C11 | 120.0 (2) | O2—C13—C12 | 125.7 (3) |
| O1—C7—C8 | 126.5 (2) | O3—C13—C12 | 109.2 (3) |
| O1—C7—C4 | 114.4 (2) | O3—C14—H14A | 109.5 |
| C8—C7—C4 | 119.1 (2) | O3—C14—H14B | 109.5 |
| C7—C8—C9 | 117.8 (2) | H14A—C14—H14B | 109.5 |
| C7—C8—H8A | 121.1 | O3—C14—H14C | 109.5 |
| C9—C8—H8A | 121.1 | H14A—C14—H14C | 109.5 |
| N—C9—C8 | 126.4 (2) | H14B—C14—H14C | 109.5 |
| N—C9—C10 | 115.3 (2) | ||
| C6—C1—C2—C3 | 1.6 (5) | C4—C7—C8—C9 | 0.1 (4) |
| C1—C2—C3—C4 | −0.9 (4) | C5—N—C9—C8 | −1.1 (4) |
| C2—C3—C4—C5 | −0.6 (4) | C5—N—C9—C10 | 176.2 (2) |
| C2—C3—C4—C7 | 179.5 (3) | C7—C8—C9—N | 1.4 (4) |
| C9—N—C5—C4 | −0.7 (3) | C7—C8—C9—C10 | −175.9 (2) |
| C9—N—C5—C6 | −180.0 (2) | N—C9—C10—F6 | 32.0 (3) |
| C3—C4—C5—N | −177.9 (2) | C8—C9—C10—F6 | −150.4 (2) |
| C7—C4—C5—N | 2.1 (3) | N—C9—C10—F4 | −87.8 (3) |
| C3—C4—C5—C6 | 1.4 (3) | C8—C9—C10—F4 | 89.8 (3) |
| C7—C4—C5—C6 | −178.7 (2) | N—C9—C10—F5 | 152.1 (2) |
| C2—C1—C6—C5 | −0.7 (4) | C8—C9—C10—F5 | −30.3 (3) |
| C2—C1—C6—C11 | 179.4 (2) | C1—C6—C11—F2 | 123.2 (3) |
| N—C5—C6—C1 | 178.5 (2) | C5—C6—C11—F2 | −56.7 (3) |
| C4—C5—C6—C1 | −0.8 (3) | C1—C6—C11—F3 | −115.5 (3) |
| N—C5—C6—C11 | −1.6 (3) | C5—C6—C11—F3 | 64.6 (3) |
| C4—C5—C6—C11 | 179.1 (2) | C1—C6—C11—F1 | 4.0 (3) |
| C12—O1—C7—C8 | 0.5 (4) | C5—C6—C11—F1 | −175.9 (2) |
| C12—O1—C7—C4 | −178.6 (2) | C7—O1—C12—C13 | −85.0 (3) |
| C3—C4—C7—O1 | −2.6 (4) | C14—O3—C13—O2 | −2.8 (5) |
| C5—C4—C7—O1 | 177.5 (2) | C14—O3—C13—C12 | 176.8 (3) |
| C3—C4—C7—C8 | 178.2 (2) | O1—C12—C13—O2 | 8.6 (4) |
| C5—C4—C7—C8 | −1.7 (4) | O1—C12—C13—O3 | −171.1 (3) |
| O1—C7—C8—C9 | −179.0 (2) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C1—H1A···F1 | 0.93 | 2.32 | 2.675 (3) | 102. |
| C12—H12B···O2i | 0.97 | 2.54 | 3.448 (4) | 156 |
Symmetry codes: (i) x+1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: VM2070).
References
- Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
- Enraf–Nonius (1985). CAD-4 Software Enraf–Nonius, Delft, The Netherlands.
- Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
- Lilienkampf, A., Mao, J. L., Wan, B. J., Wang, Y. H., Franzblau, S. J. & Kozikowski, A. P. (2009). J. Med. Chem. 52, 2109–2118. [DOI] [PubMed]
- North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811000328/vm2070sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811000328/vm2070Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


