Skip to main content
Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jan 12;67(Pt 2):o321. doi: 10.1107/S1600536811000328

Methyl 2-{[2,8-bis­(trifluoro­meth­yl)quinolin-4-yl]­oxy}acetate

Zhi-Qiang Feng a,*, Xiao-Li Yang a, Yuan-Feng Ye a, Huai-Qing Wang a, Tao Dong a
PMCID: PMC3051653  PMID: 21523007

Abstract

In the crystal structure of the title compound, C14H9F6NO3, mol­ecules are connected by inter­molecular C—H⋯O hydrogen bonds. The best planes through the benzene and pyridyl rings make a dihedral angle of 1.59 (12)°.

Related literature

The title compound is an important organic synthesis inter­mediate. For the synthetic procedure, see: Lilienkampf et al. (2009). For bond-length data, see: Allen et al. (1987).graphic file with name e-67-0o321-scheme1.jpg

Experimental

Crystal data

  • C14H9F6NO3

  • M r = 353.22

  • Monoclinic, Inline graphic

  • a = 4.6980 (9) Å

  • b = 20.549 (4) Å

  • c = 15.176 (3) Å

  • β = 95.74 (3)°

  • V = 1457.7 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.16 mm−1

  • T = 293 K

  • 0.30 × 0.20 × 0.10 mm

Data collection

  • Enraf–Nonius CAD-4 diffractometer

  • Absorption correction: ψ scan (North et al., 1968) T min = 0.953, T max = 0.984

  • 3017 measured reflections

  • 2676 independent reflections

  • 1747 reflections with I > 2σ(I)

  • R int = 0.019

  • 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

  • R[F 2 > 2σ(F 2)] = 0.051

  • wR(F 2) = 0.146

  • S = 1.01

  • 2676 reflections

  • 217 parameters

  • H-atom parameters constrained

  • Δρmax = 0.30 e Å−3

  • Δρmin = −0.24 e Å−3

Data collection: CAD-4 Software (Enraf–Nonius, 1985); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811000328/vm2070sup1.cif

e-67-0o321-sup1.cif (18.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811000328/vm2070Isup2.hkl

e-67-0o321-Isup2.hkl (131.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C12—H12B⋯O2i 0.97 2.54 3.448 (4) 156

Symmetry code: (i) Inline graphic.

Acknowledgments

This work was supported by the Natural Science Fund for Colleges and Universities in Jiangsu Province (09kjd150011). The authors thank the Center of Testing and Analysis, Nanjing University, for help with the data collection.

supplementary crystallographic information

Comment

The title compound, methyl 2-((2,8-bis(trifluoromethyl)quinolin-4-yl)oxy)acetate is an important intermediate for the synthesis of drugs (Lilienkampf et al., 2009). Here we report the crystal structure of the title compound, (I).

The molecular structure of (I) is shown in Fig. 1. The bond lengths and angles are within normal ranges (Allen et al., 1987).

The phenyl ring and pyridyl ring are nearly coplanar as indicated by the dihedral angle of 1.59 (12) ° between the best planes through both rings.

The molecules show C—H···O and C—H···F intermolecular and intramolecular hydrogen bonds (Table 1) resulting in a three dimensional network, which seems to be very effective in the stabilization of the crystal structure (Fig. 2).

Experimental

The title compound, (I) was prepared by a method reported in literature (Lilienkampf et al., 2009). The crystals were obtained by dissolving (I) (0.5 g, 1.42 mmol) in ethanol (25 ml) and evaporating the solvent slowly at room temperature for about 5 d.

Refinement

All H atoms were positioned geometrically and constrained to ride on their parent atoms, with C—H = 0.93/0.96/0.97 Å for aromatic, methyl and methylene H atoms, respectively, and with Uiso(H) = xUeq(C), where x = 1.2 for aromatic H, and x = 1.5 for other H atoms .

Figures

Fig. 1.

Fig. 1.

Molecular structure of title compound (I) with atom-numbering scheme. Displacement ellipsoids are drawn at the 40% probability level. Hydrogen bonds are shown by dashed lines.

Fig. 2.

Fig. 2.

A packing diagram for (I). C—H···O and C—H···F hydrogen bonds are shown by dashed lines.

Crystal data

C14H9F6NO3 F(000) = 712
Mr = 353.22 Dx = 1.609 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 25 reflections
a = 4.6980 (9) Å θ = 9–13°
b = 20.549 (4) Å µ = 0.16 mm1
c = 15.176 (3) Å T = 293 K
β = 95.74 (3)° Block, colourless
V = 1457.7 (5) Å3 0.30 × 0.20 × 0.10 mm
Z = 4

Data collection

Enraf–Nonius CAD-4 diffractometer 1747 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Rint = 0.019
graphite θmax = 25.3°, θmin = 1.7°
ω/2θ scans h = 0→5
Absorption correction: ψ scan (North et al., 1968) k = 0→24
Tmin = 0.953, Tmax = 0.984 l = −18→18
3017 measured reflections 3 standard reflections every 200 reflections
2676 independent reflections intensity decay: 1%

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146 H-atom parameters constrained
S = 1.01 w = 1/[σ2(Fo2) + (0.080P)2] where P = (Fo2 + 2Fc2)/3
2676 reflections (Δ/σ)max < 0.001
217 parameters Δρmax = 0.30 e Å3
0 restraints Δρmin = −0.24 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N 0.6586 (4) 0.29913 (10) 0.42412 (14) 0.0383 (5)
O1 0.5803 (5) 0.19700 (9) 0.65680 (13) 0.0594 (6)
C1 0.2049 (6) 0.40690 (14) 0.5400 (2) 0.0526 (7)
H1A 0.1174 0.4474 0.5322 0.063*
C2 0.1686 (6) 0.37110 (15) 0.61581 (19) 0.0589 (8)
H2A 0.0538 0.3874 0.6572 0.071*
O2 0.3296 (6) 0.08697 (12) 0.58771 (19) 0.0863 (8)
C3 0.2985 (6) 0.31288 (14) 0.62992 (19) 0.0504 (7)
H3A 0.2751 0.2896 0.6813 0.060*
O3 0.6519 (6) 0.02604 (12) 0.66729 (19) 0.0956 (9)
C4 0.4696 (5) 0.28728 (13) 0.56703 (17) 0.0397 (6)
F4 0.7603 (4) 0.18242 (10) 0.30737 (13) 0.0839 (7)
F5 1.1459 (4) 0.17660 (9) 0.39252 (12) 0.0840 (7)
C5 0.5037 (5) 0.32214 (11) 0.48869 (16) 0.0367 (6)
F6 1.0470 (4) 0.26159 (9) 0.31789 (13) 0.0773 (6)
C6 0.3659 (5) 0.38388 (11) 0.47696 (17) 0.0398 (6)
C7 0.6128 (6) 0.22650 (13) 0.57896 (17) 0.0436 (6)
C8 0.7689 (6) 0.20394 (12) 0.51395 (17) 0.0445 (7)
H8A 0.8646 0.1643 0.5198 0.053*
C9 0.7797 (5) 0.24217 (12) 0.43878 (16) 0.0390 (6)
C10 0.9331 (6) 0.21592 (13) 0.36447 (18) 0.0453 (7)
C11 0.3985 (6) 0.42315 (13) 0.39586 (19) 0.0462 (7)
C12 0.7187 (7) 0.13683 (16) 0.6768 (2) 0.0603 (8)
H12A 0.7505 0.1314 0.7406 0.072*
H12B 0.9034 0.1365 0.6534 0.072*
C13 0.5397 (8) 0.08173 (16) 0.6375 (2) 0.0637 (9)
C14 0.4960 (10) −0.0321 (2) 0.6392 (3) 0.1169 (16)
H14A 0.5940 −0.0695 0.6652 0.175*
H14B 0.4832 −0.0354 0.5759 0.175*
H14C 0.3070 −0.0301 0.6580 0.175*
F1 0.2699 (4) 0.48154 (8) 0.39902 (12) 0.0684 (5)
F2 0.6694 (3) 0.43562 (7) 0.38446 (11) 0.0572 (5)
F3 0.2832 (3) 0.39444 (8) 0.32177 (11) 0.0619 (5)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N 0.0317 (11) 0.0390 (12) 0.0447 (12) −0.0009 (9) 0.0068 (9) −0.0036 (10)
O1 0.0794 (15) 0.0544 (12) 0.0462 (11) 0.0071 (11) 0.0160 (10) 0.0103 (9)
C1 0.0458 (16) 0.0528 (17) 0.0594 (19) 0.0093 (13) 0.0070 (14) −0.0120 (14)
C2 0.0570 (19) 0.068 (2) 0.0536 (18) 0.0110 (16) 0.0174 (15) −0.0152 (16)
O2 0.0896 (19) 0.0781 (17) 0.0894 (18) −0.0053 (15) −0.0004 (16) −0.0006 (14)
C3 0.0475 (16) 0.0623 (19) 0.0426 (15) −0.0016 (14) 0.0108 (13) −0.0029 (13)
O3 0.120 (2) 0.0559 (15) 0.113 (2) 0.0237 (15) 0.0212 (18) 0.0158 (14)
C4 0.0316 (13) 0.0459 (14) 0.0418 (14) −0.0052 (11) 0.0050 (11) −0.0066 (12)
F4 0.0720 (12) 0.1071 (16) 0.0741 (13) −0.0201 (11) 0.0146 (10) −0.0478 (11)
F5 0.0813 (14) 0.0987 (15) 0.0746 (13) 0.0501 (12) 0.0215 (11) 0.0041 (11)
C5 0.0287 (12) 0.0400 (13) 0.0419 (14) −0.0010 (11) 0.0061 (11) −0.0073 (11)
F6 0.0927 (14) 0.0688 (12) 0.0784 (13) 0.0018 (10) 0.0485 (11) 0.0007 (10)
C6 0.0294 (13) 0.0383 (14) 0.0508 (15) −0.0013 (11) −0.0004 (11) −0.0063 (12)
C7 0.0433 (15) 0.0463 (15) 0.0405 (15) −0.0025 (12) 0.0014 (12) 0.0038 (12)
C8 0.0471 (15) 0.0401 (14) 0.0461 (16) 0.0037 (12) 0.0040 (12) −0.0003 (12)
C9 0.0324 (13) 0.0417 (14) 0.0429 (15) −0.0031 (11) 0.0041 (11) −0.0037 (12)
C10 0.0442 (15) 0.0437 (15) 0.0483 (16) 0.0059 (13) 0.0072 (13) −0.0044 (13)
C11 0.0364 (14) 0.0446 (15) 0.0579 (18) 0.0025 (12) 0.0062 (13) −0.0012 (13)
C12 0.0614 (19) 0.066 (2) 0.0537 (18) 0.0093 (16) 0.0076 (15) 0.0166 (16)
C13 0.078 (2) 0.061 (2) 0.055 (2) 0.0157 (18) 0.0226 (19) 0.0079 (16)
C14 0.138 (4) 0.072 (3) 0.142 (4) 0.001 (3) 0.021 (3) −0.003 (3)
F1 0.0688 (12) 0.0480 (10) 0.0911 (13) 0.0169 (8) 0.0205 (10) 0.0105 (9)
F2 0.0416 (9) 0.0577 (10) 0.0730 (11) −0.0068 (7) 0.0090 (8) 0.0047 (8)
F3 0.0648 (11) 0.0651 (11) 0.0537 (10) −0.0066 (9) −0.0046 (9) 0.0042 (8)

Geometric parameters (Å, °)

N—C9 1.311 (3) F5—C10 1.322 (3)
N—C5 1.362 (3) C5—C6 1.428 (3)
O1—C7 1.350 (3) F6—C10 1.320 (3)
O1—C12 1.416 (4) C6—C11 1.492 (4)
C1—C6 1.362 (4) C7—C8 1.368 (4)
C1—C2 1.391 (4) C8—C9 1.390 (3)
C1—H1A 0.9300 C8—H8A 0.9300
C2—C3 1.350 (4) C9—C10 1.498 (3)
C2—H2A 0.9300 C11—F2 1.327 (3)
O2—C13 1.186 (4) C11—F3 1.336 (3)
C3—C4 1.410 (4) C11—F1 1.346 (3)
C3—H3A 0.9300 C12—C13 1.498 (5)
O3—C13 1.321 (4) C12—H12A 0.9700
O3—C14 1.443 (5) C12—H12B 0.9700
C4—C5 1.411 (4) C14—H14A 0.9600
C4—C7 1.421 (4) C14—H14B 0.9600
F4—C10 1.320 (3) C14—H14C 0.9600
C9—N—C5 116.2 (2) C8—C9—C10 118.3 (2)
C7—O1—C12 119.4 (2) F6—C10—F4 106.0 (2)
C6—C1—C2 121.3 (3) F6—C10—F5 105.8 (2)
C6—C1—H1A 119.3 F4—C10—F5 106.7 (2)
C2—C1—H1A 119.3 F6—C10—C9 113.5 (2)
C3—C2—C1 120.6 (3) F4—C10—C9 111.8 (2)
C3—C2—H2A 119.7 F5—C10—C9 112.5 (2)
C1—C2—H2A 119.7 F2—C11—F3 106.8 (2)
C2—C3—C4 120.2 (3) F2—C11—F1 105.8 (2)
C2—C3—H3A 119.9 F3—C11—F1 106.1 (2)
C4—C3—H3A 119.9 F2—C11—C6 113.0 (2)
C13—O3—C14 116.3 (3) F3—C11—C6 112.9 (2)
C3—C4—C5 120.1 (2) F1—C11—C6 111.7 (2)
C3—C4—C7 122.4 (2) O1—C12—C13 110.3 (2)
C5—C4—C7 117.5 (2) O1—C12—H12A 109.6
N—C5—C4 122.9 (2) C13—C12—H12A 109.6
N—C5—C6 119.1 (2) O1—C12—H12B 109.6
C4—C5—C6 117.9 (2) C13—C12—H12B 109.6
C1—C6—C5 119.9 (3) H12A—C12—H12B 108.1
C1—C6—C11 120.1 (2) O2—C13—O3 125.1 (4)
C5—C6—C11 120.0 (2) O2—C13—C12 125.7 (3)
O1—C7—C8 126.5 (2) O3—C13—C12 109.2 (3)
O1—C7—C4 114.4 (2) O3—C14—H14A 109.5
C8—C7—C4 119.1 (2) O3—C14—H14B 109.5
C7—C8—C9 117.8 (2) H14A—C14—H14B 109.5
C7—C8—H8A 121.1 O3—C14—H14C 109.5
C9—C8—H8A 121.1 H14A—C14—H14C 109.5
N—C9—C8 126.4 (2) H14B—C14—H14C 109.5
N—C9—C10 115.3 (2)
C6—C1—C2—C3 1.6 (5) C4—C7—C8—C9 0.1 (4)
C1—C2—C3—C4 −0.9 (4) C5—N—C9—C8 −1.1 (4)
C2—C3—C4—C5 −0.6 (4) C5—N—C9—C10 176.2 (2)
C2—C3—C4—C7 179.5 (3) C7—C8—C9—N 1.4 (4)
C9—N—C5—C4 −0.7 (3) C7—C8—C9—C10 −175.9 (2)
C9—N—C5—C6 −180.0 (2) N—C9—C10—F6 32.0 (3)
C3—C4—C5—N −177.9 (2) C8—C9—C10—F6 −150.4 (2)
C7—C4—C5—N 2.1 (3) N—C9—C10—F4 −87.8 (3)
C3—C4—C5—C6 1.4 (3) C8—C9—C10—F4 89.8 (3)
C7—C4—C5—C6 −178.7 (2) N—C9—C10—F5 152.1 (2)
C2—C1—C6—C5 −0.7 (4) C8—C9—C10—F5 −30.3 (3)
C2—C1—C6—C11 179.4 (2) C1—C6—C11—F2 123.2 (3)
N—C5—C6—C1 178.5 (2) C5—C6—C11—F2 −56.7 (3)
C4—C5—C6—C1 −0.8 (3) C1—C6—C11—F3 −115.5 (3)
N—C5—C6—C11 −1.6 (3) C5—C6—C11—F3 64.6 (3)
C4—C5—C6—C11 179.1 (2) C1—C6—C11—F1 4.0 (3)
C12—O1—C7—C8 0.5 (4) C5—C6—C11—F1 −175.9 (2)
C12—O1—C7—C4 −178.6 (2) C7—O1—C12—C13 −85.0 (3)
C3—C4—C7—O1 −2.6 (4) C14—O3—C13—O2 −2.8 (5)
C5—C4—C7—O1 177.5 (2) C14—O3—C13—C12 176.8 (3)
C3—C4—C7—C8 178.2 (2) O1—C12—C13—O2 8.6 (4)
C5—C4—C7—C8 −1.7 (4) O1—C12—C13—O3 −171.1 (3)
O1—C7—C8—C9 −179.0 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C1—H1A···F1 0.93 2.32 2.675 (3) 102.
C12—H12B···O2i 0.97 2.54 3.448 (4) 156

Symmetry codes: (i) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: VM2070).

References

  1. Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19.
  2. Enraf–Nonius (1985). CAD-4 Software Enraf–Nonius, Delft, The Netherlands.
  3. Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
  4. Lilienkampf, A., Mao, J. L., Wan, B. J., Wang, Y. H., Franzblau, S. J. & Kozikowski, A. P. (2009). J. Med. Chem. 52, 2109–2118. [DOI] [PubMed]
  5. North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.
  6. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811000328/vm2070sup1.cif

e-67-0o321-sup1.cif (18.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811000328/vm2070Isup2.hkl

e-67-0o321-Isup2.hkl (131.4KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Structure Reports Online are provided here courtesy of International Union of Crystallography

RESOURCES