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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Feb 19;67(Pt 3):m348. doi: 10.1107/S1600536811005538

Dichlorido{N,N-dimethyl-N′-[1-(pyridin-2-yl)ethyl­idene]ethane-1,2-diamine-κ3 N,N′,N′′}cadmium

Nura Suleiman Gwaram a, Hamid Khaledi a,*, Hapipah Mohd Ali a
PMCID: PMC3051925  PMID: 21522277

Abstract

In the title compound, [CdCl2(C11H17N3)], the Schiff base acts as an N,N′,N′′-tridentate ligand towards the CdII ion. Two Cl atoms complete a distorted square-pyramidal geometry around the metal atom. In the crystal, a C—H⋯Cl inter­action connects pairs of mol­ecules into centrosymetric dimers.

Related literature

For the structure of a CuCl2 complex of the same Schiff base, see: Saleh Salga et al. (2010 ▶). For the structure of a similar CdII complex, see: Bian et al. (2003 ▶). For a description of the geometry of complexes with five-coordinate metal atoms, see: Addison et al. (1984 ▶).graphic file with name e-67-0m348-scheme1.jpg

Experimental

Crystal data

  • [CdCl2(C11H17N3)]

  • M r = 374.58

  • Triclinic, Inline graphic

  • a = 8.0276 (2) Å

  • b = 9.6048 (2) Å

  • c = 10.0851 (2) Å

  • α = 102.534 (1)°

  • β = 103.365 (1)°

  • γ = 97.850 (1)°

  • V = 724.09 (3) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 1.86 mm−1

  • T = 100 K

  • 0.23 × 0.11 × 0.04 mm

Data collection

  • Bruker APEXII CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.674, T max = 0.929

  • 5023 measured reflections

  • 2652 independent reflections

  • 2547 reflections with I > 2σ(I)

  • R int = 0.014

Refinement

  • R[F 2 > 2σ(F 2)] = 0.016

  • wR(F 2) = 0.038

  • S = 1.08

  • 2652 reflections

  • 157 parameters

  • H-atom parameters constrained

  • Δρmax = 0.29 e Å−3

  • Δρmin = −0.39 e Å−3

Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811005538/pv2387sup1.cif

e-67-0m348-sup1.cif (16.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005538/pv2387Isup2.hkl

e-67-0m348-Isup2.hkl (130.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
C7—H7B⋯Cl2i 0.98 2.77 3.679 (2) 155

Symmetry code: (i) Inline graphic.

Acknowledgments

The authors thank University of Malaya for funding this study (FRGS grant No. FP004/2010B).

supplementary crystallographic information

Comment

The title compound was obtained via the complexation of CdCl2 by N,N-dimethyl-N'-[methyl(2-pyridyl)methylene]ethane-1,2-diamine. Similar to the structure of the analogous copper(II) complex (Saleh Salga et al., 2010), the cadmium(II) ion is penta-coordinated by the N,N',N"-tridentate Schiff base ligand and two Cl atoms in a distorted square-pyramidal geometry, the τ value (Addison et al., 1984) being 0.17. This arrangement is similar to what was observed in the structure of [CdCl2(C10H15N3)], the closest analogous cadmium complex (Bian et al., 2003). In the crystal, pairs of the molecules, related by symmetry -x, -y, -z + 1, are bonded into centrosymmetric dimers via C7—H7B···Cl2 interaction.

Experimental

A mixture of 2-acetylpyridine (0.61 g, 5 mmol) and N,N-dimethylethyldiamine (0.44 g, 5 mmol) in ethanol (50 ml) was refluxed for 2 hr followed by addition of a solution of cadmium(II) chloride (0.92 g, 5 mmol) in a minimum amount of water. The resulting solution was refluxed for 30 min, then set aside at room temperature. The colorless crystals of the title compound were obtained after a few days.

Refinement

Hydrogen atoms were placed at calculated positions at distances C—H = 0.95, 0.98 and 0.99 ° for aryl, methyl and methylene type H-atoms, respectively, and were treated as riding on their parent atoms, with Uiso(H) = 1.2–1.5 times Ueq(C).

Figures

Fig. 1.

Fig. 1.

Thermal ellipsoid plot of the title compound at the 50% probability level. Hydrogen atoms are drawn as spheres of arbitrary radius.

Crystal data

[CdCl2(C11H17N3)] Z = 2
Mr = 374.58 F(000) = 372
Triclinic, P1 Dx = 1.718 Mg m−3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71073 Å
a = 8.0276 (2) Å Cell parameters from 5105 reflections
b = 9.6048 (2) Å θ = 2.2–29.7°
c = 10.0851 (2) Å µ = 1.86 mm−1
α = 102.534 (1)° T = 100 K
β = 103.365 (1)° Plate, colorless
γ = 97.850 (1)° 0.23 × 0.11 × 0.04 mm
V = 724.09 (3) Å3

Data collection

Bruker APEXII CCD diffractometer 2652 independent reflections
Radiation source: fine-focus sealed tube 2547 reflections with I > 2σ(I)
graphite Rint = 0.014
φ and ω scans θmax = 25.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −9→9
Tmin = 0.674, Tmax = 0.929 k = −11→11
5023 measured reflections l = −12→12

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.016 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.038 H-atom parameters constrained
S = 1.08 w = 1/[σ2(Fo2) + (0.0151P)2 + 0.4207P] where P = (Fo2 + 2Fc2)/3
2652 reflections (Δ/σ)max = 0.001
157 parameters Δρmax = 0.29 e Å−3
0 restraints Δρmin = −0.39 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cd1 −0.076971 (16) 0.190459 (13) 0.205336 (13) 0.01438 (5)
Cl1 −0.19397 (6) 0.14396 (5) −0.04976 (5) 0.02368 (11)
Cl2 −0.21885 (7) 0.34705 (5) 0.35214 (5) 0.02337 (11)
N1 −0.1880 (2) −0.04027 (16) 0.23109 (16) 0.0155 (3)
N2 0.1417 (2) 0.10346 (17) 0.33828 (16) 0.0171 (3)
N3 0.1925 (2) 0.34724 (17) 0.22918 (16) 0.0187 (3)
C1 −0.3543 (3) −0.1088 (2) 0.1769 (2) 0.0193 (4)
H1 −0.4351 −0.0611 0.1283 0.023*
C2 −0.4143 (3) −0.2472 (2) 0.1886 (2) 0.0214 (4)
H2 −0.5330 −0.2941 0.1471 0.026*
C3 −0.2973 (3) −0.3147 (2) 0.2619 (2) 0.0233 (4)
H3 −0.3346 −0.4091 0.2719 0.028*
C4 −0.1247 (3) −0.2432 (2) 0.3208 (2) 0.0202 (4)
H4 −0.0429 −0.2874 0.3732 0.024*
C5 −0.0729 (2) −0.1063 (2) 0.30211 (19) 0.0166 (4)
C6 0.1124 (2) −0.0244 (2) 0.35613 (19) 0.0173 (4)
C7 0.2517 (3) −0.0968 (2) 0.4217 (2) 0.0244 (4)
H7A 0.2968 −0.1510 0.3482 0.037*
H7B 0.2025 −0.1639 0.4697 0.037*
H7C 0.3470 −0.0229 0.4902 0.037*
C8 0.3182 (2) 0.1896 (2) 0.3762 (2) 0.0212 (4)
H8A 0.3840 0.1458 0.3117 0.025*
H8B 0.3803 0.1910 0.4737 0.025*
C9 0.3074 (3) 0.3439 (2) 0.3656 (2) 0.0211 (4)
H9A 0.2626 0.3932 0.4431 0.025*
H9B 0.4260 0.3985 0.3773 0.025*
C10 0.2668 (3) 0.2957 (2) 0.1115 (2) 0.0246 (4)
H10A 0.3822 0.3559 0.1282 0.037*
H10B 0.1898 0.3027 0.0233 0.037*
H10C 0.2779 0.1942 0.1045 0.037*
C11 0.1656 (3) 0.4971 (2) 0.2359 (2) 0.0286 (5)
H11A 0.2779 0.5613 0.2511 0.043*
H11B 0.1150 0.5301 0.3140 0.043*
H11C 0.0860 0.4995 0.1470 0.043*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cd1 0.01536 (8) 0.01317 (8) 0.01511 (8) 0.00330 (5) 0.00430 (5) 0.00417 (5)
Cl1 0.0233 (2) 0.0301 (3) 0.0159 (2) 0.0048 (2) 0.00258 (18) 0.00570 (19)
Cl2 0.0298 (3) 0.0205 (2) 0.0265 (2) 0.0112 (2) 0.0154 (2) 0.00792 (19)
N1 0.0182 (8) 0.0151 (7) 0.0148 (7) 0.0045 (6) 0.0055 (6) 0.0048 (6)
N2 0.0165 (8) 0.0180 (8) 0.0158 (8) 0.0040 (6) 0.0032 (6) 0.0031 (6)
N3 0.0202 (8) 0.0168 (8) 0.0194 (8) 0.0030 (6) 0.0076 (7) 0.0029 (6)
C1 0.0193 (10) 0.0203 (10) 0.0203 (9) 0.0059 (8) 0.0072 (8) 0.0063 (8)
C2 0.0200 (10) 0.0221 (10) 0.0230 (10) 0.0011 (8) 0.0091 (8) 0.0063 (8)
C3 0.0294 (11) 0.0165 (9) 0.0289 (11) 0.0041 (8) 0.0149 (9) 0.0084 (8)
C4 0.0264 (10) 0.0196 (10) 0.0211 (10) 0.0107 (8) 0.0114 (8) 0.0095 (8)
C5 0.0220 (10) 0.0162 (9) 0.0141 (9) 0.0075 (8) 0.0081 (7) 0.0033 (7)
C6 0.0205 (10) 0.0200 (9) 0.0129 (9) 0.0080 (8) 0.0056 (7) 0.0036 (7)
C7 0.0222 (10) 0.0253 (10) 0.0275 (11) 0.0083 (8) 0.0044 (9) 0.0107 (9)
C8 0.0169 (10) 0.0226 (10) 0.0218 (10) 0.0035 (8) 0.0028 (8) 0.0038 (8)
C9 0.0206 (10) 0.0194 (10) 0.0198 (10) −0.0004 (8) 0.0057 (8) −0.0001 (8)
C10 0.0239 (11) 0.0297 (11) 0.0202 (10) 0.0027 (9) 0.0100 (8) 0.0032 (8)
C11 0.0326 (12) 0.0171 (10) 0.0388 (12) 0.0030 (9) 0.0150 (10) 0.0083 (9)

Geometric parameters (Å, °)

Cd1—N2 2.3188 (15) C4—C5 1.390 (3)
Cd1—N1 2.3644 (15) C4—H4 0.9500
Cd1—N3 2.3909 (16) C5—C6 1.499 (3)
Cd1—Cl1 2.4434 (5) C6—C7 1.497 (3)
Cd1—Cl2 2.4561 (5) C7—H7A 0.9800
N1—C1 1.335 (2) C7—H7B 0.9800
N1—C5 1.350 (2) C7—H7C 0.9800
N2—C6 1.277 (2) C8—C9 1.522 (3)
N2—C8 1.459 (2) C8—H8A 0.9900
N3—C10 1.471 (2) C8—H8B 0.9900
N3—C11 1.474 (2) C9—H9A 0.9900
N3—C9 1.478 (2) C9—H9B 0.9900
C1—C2 1.389 (3) C10—H10A 0.9800
C1—H1 0.9500 C10—H10B 0.9800
C2—C3 1.379 (3) C10—H10C 0.9800
C2—H2 0.9500 C11—H11A 0.9800
C3—C4 1.388 (3) C11—H11B 0.9800
C3—H3 0.9500 C11—H11C 0.9800
N2—Cd1—N1 69.42 (5) N1—C5—C6 115.96 (16)
N2—Cd1—N3 73.39 (5) C4—C5—C6 122.77 (17)
N1—Cd1—N3 141.34 (5) N2—C6—C7 123.96 (18)
N2—Cd1—Cl1 131.13 (4) N2—C6—C5 116.71 (16)
N1—Cd1—Cl1 98.62 (4) C7—C6—C5 119.29 (16)
N3—Cd1—Cl1 97.82 (4) C6—C7—H7A 109.5
N2—Cd1—Cl2 112.49 (4) C6—C7—H7B 109.5
N1—Cd1—Cl2 100.86 (4) H7A—C7—H7B 109.5
N3—Cd1—Cl2 102.71 (4) C6—C7—H7C 109.5
Cl1—Cd1—Cl2 116.315 (17) H7A—C7—H7C 109.5
C1—N1—C5 119.09 (16) H7B—C7—H7C 109.5
C1—N1—Cd1 124.01 (12) N2—C8—C9 109.01 (16)
C5—N1—Cd1 116.87 (12) N2—C8—H8A 109.9
C6—N2—C8 121.86 (16) C9—C8—H8A 109.9
C6—N2—Cd1 120.70 (13) N2—C8—H8B 109.9
C8—N2—Cd1 116.44 (11) C9—C8—H8B 109.9
C10—N3—C11 110.06 (16) H8A—C8—H8B 108.3
C10—N3—C9 111.56 (15) N3—C9—C8 112.34 (15)
C11—N3—C9 108.99 (15) N3—C9—H9A 109.1
C10—N3—Cd1 110.95 (11) C8—C9—H9A 109.1
C11—N3—Cd1 110.21 (12) N3—C9—H9B 109.1
C9—N3—Cd1 104.94 (11) C8—C9—H9B 109.1
N1—C1—C2 122.72 (18) H9A—C9—H9B 107.9
N1—C1—H1 118.6 N3—C10—H10A 109.5
C2—C1—H1 118.6 N3—C10—H10B 109.5
C3—C2—C1 118.40 (18) H10A—C10—H10B 109.5
C3—C2—H2 120.8 N3—C10—H10C 109.5
C1—C2—H2 120.8 H10A—C10—H10C 109.5
C2—C3—C4 119.34 (18) H10B—C10—H10C 109.5
C2—C3—H3 120.3 N3—C11—H11A 109.5
C4—C3—H3 120.3 N3—C11—H11B 109.5
C3—C4—C5 119.17 (18) H11A—C11—H11B 109.5
C3—C4—H4 120.4 N3—C11—H11C 109.5
C5—C4—H4 120.4 H11A—C11—H11C 109.5
N1—C5—C4 121.26 (17) H11B—C11—H11C 109.5

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C7—H7B···Cl2i 0.98 2.77 3.679 (2) 155

Symmetry codes: (i) −x, −y, −z+1.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: PV2387).

References

  1. Addison, A. W., Rao, T. N., Reedijk, J., Rijn, V. J. & Verschoor, G. C. (1984). J. Chem. Soc. Dalton Trans. pp. 1349–1356.
  2. Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
  3. Bian, H.-D., Xu, J.-Y., Gu, W., Yan, S.-P., Liao, D.-Z., Jiang, Z.-H. & Cheng, P. (2003). Chin. J. Struct. Chem 22, 710–712.
  4. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  5. Saleh Salga, M., Khaledi, H., Mohd Ali, H. & Puteh, R. (2010). Acta Cryst. E66, m508. [DOI] [PMC free article] [PubMed]
  6. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  8. Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811005538/pv2387sup1.cif

e-67-0m348-sup1.cif (16.2KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005538/pv2387Isup2.hkl

e-67-0m348-Isup2.hkl (130.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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