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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Feb 12;67(Pt 3):m317–m318. doi: 10.1107/S1600536811004235

Bis(cytosinium) aqua­penta­chlorido­indate(III)

Sofiane Bouacida a,*,‡, Ratiba Belhouas a, Boubakeur Fantazi a, Chaouki Boudaren a, Thierry Roisnel b
PMCID: PMC3051970  PMID: 21522251

Abstract

The asymmetric unit of the title compound, (C4H6N3O)2[InCl5(H2O)], comprises two independent cytosinium cations and an aquapentachloridoindate anion. The InIII ion is in a slightly distorted octa­hedral coordination geometry. In the crystal, alternating layers of cations and anions are arranged along [010] and are linked via inter­molecular N—H⋯O, O—H⋯Cl and N—H⋯Cl hydrogen bonds, forming sheets parallel to (001). Additional stabilization within these sheeets is provided by weak inter­molecular C—H⋯O inter­actions.

Related literature

For related structures, see: Bouacida (2008 ▶); Bouacida et al. (2005 ▶, 2009 ▶); Casellato et al. (1995 ▶); Cherouana et al. (2003 ▶). For standard bond lengths see: Allen et al. (1987 ▶).graphic file with name e-67-0m317-scheme1.jpg

Experimental

Crystal data

  • (C4H6N3O)2[InCl5(H2O)]

  • M r = 534.32

  • Triclinic, Inline graphic

  • a = 6.863 (1) Å

  • b = 10.487 (2) Å

  • c = 12.765 (2) Å

  • α = 104.608 (1)°

  • β = 97.998 (1)°

  • γ = 98.121 (1)°

  • V = 865.3 (2) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 2.16 mm−1

  • T = 295 K

  • 0.18 × 0.09 × 0.07 mm

Data collection

  • Nonius KappaCCD diffractometer

  • 18109 measured reflections

  • 3933 independent reflections

  • 3572 reflections with I > 2σ(I)

  • R int = 0.032

Refinement

  • R[F 2 > 2σ(F 2)] = 0.020

  • wR(F 2) = 0.048

  • S = 1.07

  • 3929 reflections

  • 214 parameters

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.35 e Å−3

  • Δρmin = −0.61 e Å−3

Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and DIAMOND (Brandenburg et al., 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811004235/lh5204sup1.cif

e-67-0m317-sup1.cif (18.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004235/lh5204Isup2.hkl

e-67-0m317-Isup2.hkl (188.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A D⋯A D—H⋯A
O1W—H1W⋯Cl1i 0.80 (3) 2.52 (3) 3.3033 (17) 167 (2)
N2A—H2A⋯Cl4ii 0.86 2.41 3.2185 (18) 156
N2B—H2B⋯Cl2iii 0.86 2.47 3.2774 (18) 157
O1W—H2W⋯Cl2ii 0.78 (3) 2.49 (3) 3.2667 (18) 174 (3)
N6A—H6A⋯Cl3iii 0.86 2.37 3.2104 (17) 164
N6B—H6B⋯Cl5ii 0.86 2.38 3.2160 (18) 163
N7A—H71A⋯O1Ai 0.86 2.19 2.965 (3) 150
N7B—H71B⋯O1Wiii 0.86 2.38 3.226 (3) 168
N7A—H72A⋯Cl1ii 0.86 2.69 3.471 (2) 152
N7B—H72B⋯O1Biv 0.86 2.22 2.987 (3) 149
C4A—H4A⋯O1Ai 0.93 2.30 3.068 (3) 140
C4B—H4B⋯O1Biv 0.93 2.28 3.051 (3) 140

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Acknowledgments

This work was supported by the Unité de Recherche de Chimie de l’Environnement et Moléculaire Structurale, CHEMS, Université Mentouri-Constantine, Algeria.

supplementary crystallographic information

Comment

The title compound, was prepared as part of our ongoing studies of hydrogen-bonding interaction in the crystal structures of protonated amines (Bouacida, 2008; Bouacida et al., 2009). The asymmetric unit of the title compound (I) is shown in Fig. 1. The bond distances (Allen et al. 1987) and angles are within the ranges of accepted values. In the title compound the imine N atom is protonated as in other related structures (Bouacida et al., 2005; Casellato, et al. 1995; Cherouana et al., 2003). The In atom is six-coordinated (by five chlorine atoms and one water molecule) forming a slightly-distorted octahedral geometry. In the crystal structure alternating layers of cations and anions are arranged along [010] and are linked via intermolecular N—H···O, O—H···Cl and N—H···Cl hydrogen bonds to form a two-dimensional sheets parallel to (001) (see Fig. 2). Additional stabilization within these sheeets is provided by weak intermolecular C—H···O interactions.

Experimental

A solution of 1 mmol InCl3 and 2 mmol cytosine in hydrochloric acid was slowly evaporated to dryness over a period of two weeks yielding red crystals suitable for X-ray diffraction.

Refinement

All H atoms were visible in differnce Fourier maps but were introduced in calculated positions and treated as riding on C and N atoms with C—H = 0.93Å and N—H = 0.86Å and Uiso(H) = 1.2(C,N). The water H atoms were located in a difference Fourier map and their positions were refined with Uiso(H) =1.5 Ueq(O).

Figures

Fig. 1.

Fig. 1.

The asymmetric unit of the title compound with displacement ellipsoids drawn at the 50% probability level.

Fig. 2.

Fig. 2.

Part of the crystal structure with hydrogen bonds shown as dashed lines.

Crystal data

(C4H6N3O)2[InCl5(H2O)] Z = 2
Mr = 534.32 F(000) = 524
Triclinic, P1 Dx = 2.051 Mg m−3
a = 6.863 (1) Å Mo Kα radiation, λ = 0.71073 Å
b = 10.487 (2) Å Cell parameters from 8762 reflections
c = 12.765 (2) Å θ = 3.1–27.5°
α = 104.608 (1)° µ = 2.16 mm−1
β = 97.998 (1)° T = 295 K
γ = 98.121 (1)° Needle, red
V = 865.3 (2) Å3 0.18 × 0.09 × 0.07 mm

Data collection

Nonius KappaCCD diffractometer Rint = 0.032
graphite θmax = 27.6°, θmin = 1.7°
CCD rotation images, thick slices scans h = −8→8
18109 measured reflections k = −13→13
3933 independent reflections l = −16→16
3572 reflections with I > 2σ(I)

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.02 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.048 H atoms treated by a mixture of independent and constrained refinement
S = 1.07 w = 1/[σ2(Fo2) + (0.0229P)2 + 0.0464P] where P = (Fo2 + 2Fc2)/3
3929 reflections (Δ/σ)max = 0.002
214 parameters Δρmax = 0.35 e Å−3
0 restraints Δρmin = −0.61 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.4 bad reflections were omitted from the refinement

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
In1 0.550968 (18) 0.423292 (12) 0.265050 (10) 0.02044 (5)
Cl2 0.68990 (8) 0.33651 (5) 0.42094 (4) 0.03022 (11)
Cl3 0.35973 (7) 0.19643 (4) 0.16412 (4) 0.02749 (11)
Cl4 0.36901 (7) 0.51814 (5) 0.13047 (4) 0.03375 (12)
Cl5 0.68860 (8) 0.65285 (5) 0.38414 (5) 0.03400 (12)
Cl1 0.84669 (8) 0.39953 (6) 0.17617 (5) 0.03882 (13)
N2B 0.6503 (2) −0.06652 (16) 0.62369 (13) 0.0249 (4)
H2B 0.5921 −0.1469 0.6175 0.03*
O1B 0.3547 (2) 0.00633 (15) 0.63256 (14) 0.0405 (4)
N6A 0.3443 (2) 0.01389 (16) 0.88504 (14) 0.0282 (4)
H6A 0.411 −0.0502 0.8804 0.034*
O1A 0.6221 (2) 0.16293 (15) 0.89141 (15) 0.0455 (4)
N6B 0.6325 (2) 0.15524 (17) 0.63714 (15) 0.0316 (4)
H6B 0.5662 0.2195 0.641 0.038*
N7B 0.9460 (2) −0.14472 (16) 0.62174 (14) 0.0304 (4)
H71B 0.8827 −0.2227 0.619 0.037*
H72B 1.0728 −0.1321 0.6225 0.037*
C4B 0.9437 (3) 0.08585 (19) 0.63066 (16) 0.0264 (4)
H4B 1.08 0.1051 0.6303 0.032*
C3B 0.8491 (3) −0.04516 (19) 0.62486 (15) 0.0227 (4)
C4A 0.0348 (3) 0.08195 (19) 0.89372 (16) 0.0258 (4)
H4A −0.1012 0.0624 0.8951 0.031*
C5B 0.8318 (3) 0.1819 (2) 0.63676 (17) 0.0302 (5)
H5B 0.8922 0.2685 0.6408 0.036*
C1B 0.5332 (3) 0.0312 (2) 0.63174 (16) 0.0266 (4)
C3A 0.1280 (3) 0.21374 (18) 0.90100 (15) 0.0234 (4)
O1W 0.2642 (2) 0.42641 (16) 0.35025 (13) 0.0319 (3)
H1W 0.166 (4) 0.433 (2) 0.312 (2) 0.048*
H2W 0.272 (4) 0.487 (3) 0.402 (2) 0.048*
C5A 0.1454 (3) −0.01407 (19) 0.88486 (16) 0.0267 (4)
H3A 0.0849 −0.1015 0.8785 0.032*
C1A 0.4435 (3) 0.1381 (2) 0.89219 (17) 0.0284 (4)
N7A 0.0296 (3) 0.31296 (17) 0.90638 (15) 0.0354 (4)
H72A 0.091 0.3911 0.9082 0.042*
H71A −0.0963 0.2999 0.9081 0.042*
N2A 0.3263 (2) 0.23531 (16) 0.89832 (14) 0.0258 (4)
H2A 0.3828 0.3148 0.9006 0.031*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
In1 0.01960 (8) 0.01626 (7) 0.02516 (8) 0.00200 (5) 0.00384 (5) 0.00607 (5)
Cl2 0.0331 (3) 0.0272 (2) 0.0304 (3) 0.0062 (2) 0.0002 (2) 0.0106 (2)
Cl3 0.0290 (3) 0.0184 (2) 0.0310 (3) 0.00087 (18) 0.0023 (2) 0.00312 (19)
Cl4 0.0287 (3) 0.0312 (3) 0.0428 (3) 0.0015 (2) −0.0020 (2) 0.0198 (2)
Cl5 0.0313 (3) 0.0185 (2) 0.0444 (3) −0.0001 (2) −0.0013 (2) 0.0017 (2)
Cl1 0.0277 (3) 0.0490 (3) 0.0454 (3) 0.0106 (2) 0.0166 (2) 0.0159 (3)
N2B 0.0211 (8) 0.0216 (8) 0.0346 (9) 0.0037 (6) 0.0062 (7) 0.0118 (7)
O1B 0.0207 (8) 0.0379 (9) 0.0675 (11) 0.0080 (7) 0.0129 (7) 0.0187 (8)
N6A 0.0253 (9) 0.0235 (8) 0.0384 (10) 0.0089 (7) 0.0066 (8) 0.0101 (7)
O1A 0.0206 (8) 0.0371 (9) 0.0813 (13) 0.0066 (7) 0.0145 (8) 0.0175 (9)
N6B 0.0244 (9) 0.0256 (9) 0.0501 (11) 0.0096 (7) 0.0088 (8) 0.0162 (8)
N7B 0.0255 (9) 0.0268 (9) 0.0386 (10) 0.0071 (7) 0.0055 (8) 0.0072 (8)
C4B 0.0183 (9) 0.0304 (11) 0.0312 (11) 0.0022 (8) 0.0048 (8) 0.0113 (9)
C3B 0.0229 (10) 0.0257 (10) 0.0193 (9) 0.0051 (8) 0.0034 (7) 0.0060 (8)
C4A 0.0180 (9) 0.0301 (11) 0.0288 (11) 0.0011 (8) 0.0043 (8) 0.0093 (8)
C5B 0.0268 (11) 0.0241 (10) 0.0402 (12) −0.0012 (8) 0.0051 (9) 0.0135 (9)
C1B 0.0215 (10) 0.0310 (11) 0.0306 (11) 0.0079 (8) 0.0062 (8) 0.0122 (9)
C3A 0.0212 (9) 0.0230 (9) 0.0243 (10) 0.0035 (8) 0.0038 (8) 0.0041 (8)
O1W 0.0262 (8) 0.0365 (9) 0.0297 (8) 0.0082 (7) 0.0045 (6) 0.0022 (6)
C5A 0.0263 (10) 0.0246 (10) 0.0276 (11) −0.0005 (8) 0.0041 (8) 0.0079 (8)
C1A 0.0219 (10) 0.0284 (10) 0.0353 (11) 0.0061 (8) 0.0069 (9) 0.0078 (9)
N7A 0.0239 (9) 0.0265 (9) 0.0529 (12) 0.0052 (7) 0.0076 (8) 0.0054 (8)
N2A 0.0191 (8) 0.0216 (8) 0.0372 (10) 0.0015 (6) 0.0062 (7) 0.0095 (7)

Geometric parameters (Å, °)

In1—O1W 2.3776 (15) N7B—H71B 0.86
In1—Cl1 2.4718 (6) N7B—H72B 0.86
In1—Cl5 2.4720 (6) C4B—C5B 1.344 (3)
In1—Cl4 2.4730 (6) C4B—C3B 1.413 (3)
In1—Cl3 2.4787 (6) C4B—H4B 0.93
In1—Cl2 2.5155 (6) C4A—C5A 1.337 (3)
N2B—C3B 1.349 (2) C4A—C3A 1.413 (3)
N2B—C1B 1.381 (2) C4A—H4A 0.93
N2B—H2B 0.86 C5B—H5B 0.93
O1B—C1B 1.218 (2) C3A—N7A 1.311 (2)
N6A—C5A 1.354 (2) C3A—N2A 1.355 (2)
N6A—C1A 1.356 (3) O1W—H1W 0.80 (2)
N6A—H6A 0.86 O1W—H2W 0.78 (3)
O1A—C1A 1.218 (2) C5A—H3A 0.93
N6B—C5B 1.357 (2) C1A—N2A 1.379 (2)
N6B—C1B 1.361 (2) N7A—H72A 0.86
N6B—H6B 0.86 N7A—H71A 0.86
N7B—C3B 1.310 (2) N2A—H2A 0.86
O1W—In1—Cl1 175.07 (4) N7B—C3B—N2B 119.31 (17)
O1W—In1—Cl5 88.65 (4) N7B—C3B—C4B 123.05 (17)
Cl1—In1—Cl5 95.26 (2) N2B—C3B—C4B 117.64 (17)
O1W—In1—Cl4 86.45 (4) C5A—C4A—C3A 118.82 (17)
Cl1—In1—Cl4 96.55 (2) C5A—C4A—H4A 120.6
Cl5—In1—Cl4 89.56 (2) C3A—C4A—H4A 120.6
O1W—In1—Cl3 80.65 (4) C4B—C5B—N6B 121.53 (18)
Cl1—In1—Cl3 95.42 (2) C4B—C5B—H5B 119.2
Cl5—In1—Cl3 169.296 (17) N6B—C5B—H5B 119.2
Cl4—In1—Cl3 89.95 (2) O1B—C1B—N6B 123.31 (18)
O1W—In1—Cl2 83.91 (4) O1B—C1B—N2B 121.90 (18)
Cl1—In1—Cl2 93.21 (2) N6B—C1B—N2B 114.78 (16)
Cl5—In1—Cl2 88.07 (2) N7A—C3A—N2A 119.53 (17)
Cl4—In1—Cl2 170.125 (18) N7A—C3A—C4A 122.86 (18)
Cl3—In1—Cl2 90.60 (2) N2A—C3A—C4A 117.57 (17)
C3B—N2B—C1B 124.87 (16) In1—O1W—H1W 114.4 (18)
C3B—N2B—H2B 117.6 In1—O1W—H2W 115.7 (19)
C1B—N2B—H2B 117.6 H1W—O1W—H2W 101 (2)
C5A—N6A—C1A 123.24 (17) C4A—C5A—N6A 121.06 (18)
C5A—N6A—H6A 118.4 C4A—C5A—H3A 119.5
C1A—N6A—H6A 118.4 N6A—C5A—H3A 119.5
C5B—N6B—C1B 122.77 (17) O1A—C1A—N6A 123.22 (18)
C5B—N6B—H6B 118.6 O1A—C1A—N2A 121.78 (18)
C1B—N6B—H6B 118.6 N6A—C1A—N2A 114.99 (17)
C3B—N7B—H71B 120 C3A—N7A—H72A 120
C3B—N7B—H72B 120 C3A—N7A—H71A 120
H71B—N7B—H72B 120 H72A—N7A—H71A 120
C5B—C4B—C3B 118.37 (18) C3A—N2A—C1A 124.27 (16)
C5B—C4B—H4B 120.8 C3A—N2A—H2A 117.9
C3B—C4B—H4B 120.8 C1A—N2A—H2A 117.9
C1B—N2B—C3B—N7B 176.87 (18) C5A—C4A—C3A—N7A 177.79 (19)
C1B—N2B—C3B—C4B −2.5 (3) C5A—C4A—C3A—N2A 0.1 (3)
C5B—C4B—C3B—N7B −178.07 (19) C3A—C4A—C5A—N6A 1.3 (3)
C5B—C4B—C3B—N2B 1.2 (3) C1A—N6A—C5A—C4A −1.1 (3)
C3B—C4B—C5B—N6B −0.2 (3) C5A—N6A—C1A—O1A −179.4 (2)
C1B—N6B—C5B—C4B 0.2 (3) C5A—N6A—C1A—N2A −0.6 (3)
C5B—N6B—C1B—O1B 179.6 (2) N7A—C3A—N2A—C1A −179.71 (19)
C5B—N6B—C1B—N2B −1.2 (3) C4A—C3A—N2A—C1A −2.0 (3)
C3B—N2B—C1B—O1B −178.40 (19) O1A—C1A—N2A—C3A −179.1 (2)
C3B—N2B—C1B—N6B 2.4 (3) N6A—C1A—N2A—C3A 2.2 (3)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
O1W—H1W···Cl1i 0.80 (3) 2.52 (3) 3.3033 (17) 167 (2)
N2A—H2A···Cl4ii 0.86 2.41 3.2185 (18) 156
N2B—H2B···Cl2iii 0.86 2.47 3.2774 (18) 157
O1W—H2W···Cl2ii 0.78 (3) 2.49 (3) 3.2667 (18) 174 (3)
N6A—H6A···Cl3iii 0.86 2.37 3.2104 (17) 164
N6B—H6B···Cl5ii 0.86 2.38 3.2160 (18) 163
N7A—H71A···O1Ai 0.86 2.19 2.965 (3) 150
N7B—H71B···O1Wiii 0.86 2.38 3.226 (3) 168
N7A—H72A···Cl1ii 0.86 2.69 3.471 (2) 152
N7B—H72B···O1Biv 0.86 2.22 2.987 (3) 149
C4A—H4A···O1Ai 0.93 2.30 3.068 (3) 140
C4B—H4B···O1Biv 0.93 2.28 3.051 (3) 140

Symmetry codes: (i) x−1, y, z; (ii) −x+1, −y+1, −z+1; (iii) −x+1, −y, −z+1; (iv) x+1, y, z.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5204).

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811004235/lh5204sup1.cif

e-67-0m317-sup1.cif (18.8KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004235/lh5204Isup2.hkl

e-67-0m317-Isup2.hkl (188.6KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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