Abstract
The asymmetric unit of the title compound, (C4H6N3O)2[InCl5(H2O)], comprises two independent cytosinium cations and an aquapentachloridoindate anion. The InIII ion is in a slightly distorted octahedral coordination geometry. In the crystal, alternating layers of cations and anions are arranged along [010] and are linked via intermolecular N—H⋯O, O—H⋯Cl and N—H⋯Cl hydrogen bonds, forming sheets parallel to (001). Additional stabilization within these sheeets is provided by weak intermolecular C—H⋯O interactions.
Related literature
For related structures, see: Bouacida (2008 ▶); Bouacida et al. (2005 ▶, 2009 ▶); Casellato et al. (1995 ▶); Cherouana et al. (2003 ▶). For standard bond lengths see: Allen et al. (1987 ▶).
Experimental
Crystal data
(C4H6N3O)2[InCl5(H2O)]
M r = 534.32
Triclinic,
a = 6.863 (1) Å
b = 10.487 (2) Å
c = 12.765 (2) Å
α = 104.608 (1)°
β = 97.998 (1)°
γ = 98.121 (1)°
V = 865.3 (2) Å3
Z = 2
Mo Kα radiation
μ = 2.16 mm−1
T = 295 K
0.18 × 0.09 × 0.07 mm
Data collection
Nonius KappaCCD diffractometer
18109 measured reflections
3933 independent reflections
3572 reflections with I > 2σ(I)
R int = 0.032
Refinement
R[F 2 > 2σ(F 2)] = 0.020
wR(F 2) = 0.048
S = 1.07
3929 reflections
214 parameters
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.35 e Å−3
Δρmin = −0.61 e Å−3
Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and DIAMOND (Brandenburg et al., 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶).
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811004235/lh5204sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004235/lh5204Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O1W—H1W⋯Cl1i | 0.80 (3) | 2.52 (3) | 3.3033 (17) | 167 (2) |
| N2A—H2A⋯Cl4ii | 0.86 | 2.41 | 3.2185 (18) | 156 |
| N2B—H2B⋯Cl2iii | 0.86 | 2.47 | 3.2774 (18) | 157 |
| O1W—H2W⋯Cl2ii | 0.78 (3) | 2.49 (3) | 3.2667 (18) | 174 (3) |
| N6A—H6A⋯Cl3iii | 0.86 | 2.37 | 3.2104 (17) | 164 |
| N6B—H6B⋯Cl5ii | 0.86 | 2.38 | 3.2160 (18) | 163 |
| N7A—H71A⋯O1Ai | 0.86 | 2.19 | 2.965 (3) | 150 |
| N7B—H71B⋯O1Wiii | 0.86 | 2.38 | 3.226 (3) | 168 |
| N7A—H72A⋯Cl1ii | 0.86 | 2.69 | 3.471 (2) | 152 |
| N7B—H72B⋯O1Biv | 0.86 | 2.22 | 2.987 (3) | 149 |
| C4A—H4A⋯O1Ai | 0.93 | 2.30 | 3.068 (3) | 140 |
| C4B—H4B⋯O1Biv | 0.93 | 2.28 | 3.051 (3) | 140 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
.
Acknowledgments
This work was supported by the Unité de Recherche de Chimie de l’Environnement et Moléculaire Structurale, CHEMS, Université Mentouri-Constantine, Algeria.
supplementary crystallographic information
Comment
The title compound, was prepared as part of our ongoing studies of hydrogen-bonding interaction in the crystal structures of protonated amines (Bouacida, 2008; Bouacida et al., 2009). The asymmetric unit of the title compound (I) is shown in Fig. 1. The bond distances (Allen et al. 1987) and angles are within the ranges of accepted values. In the title compound the imine N atom is protonated as in other related structures (Bouacida et al., 2005; Casellato, et al. 1995; Cherouana et al., 2003). The In atom is six-coordinated (by five chlorine atoms and one water molecule) forming a slightly-distorted octahedral geometry. In the crystal structure alternating layers of cations and anions are arranged along [010] and are linked via intermolecular N—H···O, O—H···Cl and N—H···Cl hydrogen bonds to form a two-dimensional sheets parallel to (001) (see Fig. 2). Additional stabilization within these sheeets is provided by weak intermolecular C—H···O interactions.
Experimental
A solution of 1 mmol InCl3 and 2 mmol cytosine in hydrochloric acid was slowly evaporated to dryness over a period of two weeks yielding red crystals suitable for X-ray diffraction.
Refinement
All H atoms were visible in differnce Fourier maps but were introduced in calculated positions and treated as riding on C and N atoms with C—H = 0.93Å and N—H = 0.86Å and Uiso(H) = 1.2(C,N). The water H atoms were located in a difference Fourier map and their positions were refined with Uiso(H) =1.5 Ueq(O).
Figures
Fig. 1.
The asymmetric unit of the title compound with displacement ellipsoids drawn at the 50% probability level.
Fig. 2.
Part of the crystal structure with hydrogen bonds shown as dashed lines.
Crystal data
| (C4H6N3O)2[InCl5(H2O)] | Z = 2 |
| Mr = 534.32 | F(000) = 524 |
| Triclinic, P1 | Dx = 2.051 Mg m−3 |
| a = 6.863 (1) Å | Mo Kα radiation, λ = 0.71073 Å |
| b = 10.487 (2) Å | Cell parameters from 8762 reflections |
| c = 12.765 (2) Å | θ = 3.1–27.5° |
| α = 104.608 (1)° | µ = 2.16 mm−1 |
| β = 97.998 (1)° | T = 295 K |
| γ = 98.121 (1)° | Needle, red |
| V = 865.3 (2) Å3 | 0.18 × 0.09 × 0.07 mm |
Data collection
| Nonius KappaCCD diffractometer | Rint = 0.032 |
| graphite | θmax = 27.6°, θmin = 1.7° |
| CCD rotation images, thick slices scans | h = −8→8 |
| 18109 measured reflections | k = −13→13 |
| 3933 independent reflections | l = −16→16 |
| 3572 reflections with I > 2σ(I) |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.02 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.048 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.07 | w = 1/[σ2(Fo2) + (0.0229P)2 + 0.0464P] where P = (Fo2 + 2Fc2)/3 |
| 3929 reflections | (Δ/σ)max = 0.002 |
| 214 parameters | Δρmax = 0.35 e Å−3 |
| 0 restraints | Δρmin = −0.61 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.4 bad reflections were omitted from the refinement |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| In1 | 0.550968 (18) | 0.423292 (12) | 0.265050 (10) | 0.02044 (5) | |
| Cl2 | 0.68990 (8) | 0.33651 (5) | 0.42094 (4) | 0.03022 (11) | |
| Cl3 | 0.35973 (7) | 0.19643 (4) | 0.16412 (4) | 0.02749 (11) | |
| Cl4 | 0.36901 (7) | 0.51814 (5) | 0.13047 (4) | 0.03375 (12) | |
| Cl5 | 0.68860 (8) | 0.65285 (5) | 0.38414 (5) | 0.03400 (12) | |
| Cl1 | 0.84669 (8) | 0.39953 (6) | 0.17617 (5) | 0.03882 (13) | |
| N2B | 0.6503 (2) | −0.06652 (16) | 0.62369 (13) | 0.0249 (4) | |
| H2B | 0.5921 | −0.1469 | 0.6175 | 0.03* | |
| O1B | 0.3547 (2) | 0.00633 (15) | 0.63256 (14) | 0.0405 (4) | |
| N6A | 0.3443 (2) | 0.01389 (16) | 0.88504 (14) | 0.0282 (4) | |
| H6A | 0.411 | −0.0502 | 0.8804 | 0.034* | |
| O1A | 0.6221 (2) | 0.16293 (15) | 0.89141 (15) | 0.0455 (4) | |
| N6B | 0.6325 (2) | 0.15524 (17) | 0.63714 (15) | 0.0316 (4) | |
| H6B | 0.5662 | 0.2195 | 0.641 | 0.038* | |
| N7B | 0.9460 (2) | −0.14472 (16) | 0.62174 (14) | 0.0304 (4) | |
| H71B | 0.8827 | −0.2227 | 0.619 | 0.037* | |
| H72B | 1.0728 | −0.1321 | 0.6225 | 0.037* | |
| C4B | 0.9437 (3) | 0.08585 (19) | 0.63066 (16) | 0.0264 (4) | |
| H4B | 1.08 | 0.1051 | 0.6303 | 0.032* | |
| C3B | 0.8491 (3) | −0.04516 (19) | 0.62486 (15) | 0.0227 (4) | |
| C4A | 0.0348 (3) | 0.08195 (19) | 0.89372 (16) | 0.0258 (4) | |
| H4A | −0.1012 | 0.0624 | 0.8951 | 0.031* | |
| C5B | 0.8318 (3) | 0.1819 (2) | 0.63676 (17) | 0.0302 (5) | |
| H5B | 0.8922 | 0.2685 | 0.6408 | 0.036* | |
| C1B | 0.5332 (3) | 0.0312 (2) | 0.63174 (16) | 0.0266 (4) | |
| C3A | 0.1280 (3) | 0.21374 (18) | 0.90100 (15) | 0.0234 (4) | |
| O1W | 0.2642 (2) | 0.42641 (16) | 0.35025 (13) | 0.0319 (3) | |
| H1W | 0.166 (4) | 0.433 (2) | 0.312 (2) | 0.048* | |
| H2W | 0.272 (4) | 0.487 (3) | 0.402 (2) | 0.048* | |
| C5A | 0.1454 (3) | −0.01407 (19) | 0.88486 (16) | 0.0267 (4) | |
| H3A | 0.0849 | −0.1015 | 0.8785 | 0.032* | |
| C1A | 0.4435 (3) | 0.1381 (2) | 0.89219 (17) | 0.0284 (4) | |
| N7A | 0.0296 (3) | 0.31296 (17) | 0.90638 (15) | 0.0354 (4) | |
| H72A | 0.091 | 0.3911 | 0.9082 | 0.042* | |
| H71A | −0.0963 | 0.2999 | 0.9081 | 0.042* | |
| N2A | 0.3263 (2) | 0.23531 (16) | 0.89832 (14) | 0.0258 (4) | |
| H2A | 0.3828 | 0.3148 | 0.9006 | 0.031* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| In1 | 0.01960 (8) | 0.01626 (7) | 0.02516 (8) | 0.00200 (5) | 0.00384 (5) | 0.00607 (5) |
| Cl2 | 0.0331 (3) | 0.0272 (2) | 0.0304 (3) | 0.0062 (2) | 0.0002 (2) | 0.0106 (2) |
| Cl3 | 0.0290 (3) | 0.0184 (2) | 0.0310 (3) | 0.00087 (18) | 0.0023 (2) | 0.00312 (19) |
| Cl4 | 0.0287 (3) | 0.0312 (3) | 0.0428 (3) | 0.0015 (2) | −0.0020 (2) | 0.0198 (2) |
| Cl5 | 0.0313 (3) | 0.0185 (2) | 0.0444 (3) | −0.0001 (2) | −0.0013 (2) | 0.0017 (2) |
| Cl1 | 0.0277 (3) | 0.0490 (3) | 0.0454 (3) | 0.0106 (2) | 0.0166 (2) | 0.0159 (3) |
| N2B | 0.0211 (8) | 0.0216 (8) | 0.0346 (9) | 0.0037 (6) | 0.0062 (7) | 0.0118 (7) |
| O1B | 0.0207 (8) | 0.0379 (9) | 0.0675 (11) | 0.0080 (7) | 0.0129 (7) | 0.0187 (8) |
| N6A | 0.0253 (9) | 0.0235 (8) | 0.0384 (10) | 0.0089 (7) | 0.0066 (8) | 0.0101 (7) |
| O1A | 0.0206 (8) | 0.0371 (9) | 0.0813 (13) | 0.0066 (7) | 0.0145 (8) | 0.0175 (9) |
| N6B | 0.0244 (9) | 0.0256 (9) | 0.0501 (11) | 0.0096 (7) | 0.0088 (8) | 0.0162 (8) |
| N7B | 0.0255 (9) | 0.0268 (9) | 0.0386 (10) | 0.0071 (7) | 0.0055 (8) | 0.0072 (8) |
| C4B | 0.0183 (9) | 0.0304 (11) | 0.0312 (11) | 0.0022 (8) | 0.0048 (8) | 0.0113 (9) |
| C3B | 0.0229 (10) | 0.0257 (10) | 0.0193 (9) | 0.0051 (8) | 0.0034 (7) | 0.0060 (8) |
| C4A | 0.0180 (9) | 0.0301 (11) | 0.0288 (11) | 0.0011 (8) | 0.0043 (8) | 0.0093 (8) |
| C5B | 0.0268 (11) | 0.0241 (10) | 0.0402 (12) | −0.0012 (8) | 0.0051 (9) | 0.0135 (9) |
| C1B | 0.0215 (10) | 0.0310 (11) | 0.0306 (11) | 0.0079 (8) | 0.0062 (8) | 0.0122 (9) |
| C3A | 0.0212 (9) | 0.0230 (9) | 0.0243 (10) | 0.0035 (8) | 0.0038 (8) | 0.0041 (8) |
| O1W | 0.0262 (8) | 0.0365 (9) | 0.0297 (8) | 0.0082 (7) | 0.0045 (6) | 0.0022 (6) |
| C5A | 0.0263 (10) | 0.0246 (10) | 0.0276 (11) | −0.0005 (8) | 0.0041 (8) | 0.0079 (8) |
| C1A | 0.0219 (10) | 0.0284 (10) | 0.0353 (11) | 0.0061 (8) | 0.0069 (9) | 0.0078 (9) |
| N7A | 0.0239 (9) | 0.0265 (9) | 0.0529 (12) | 0.0052 (7) | 0.0076 (8) | 0.0054 (8) |
| N2A | 0.0191 (8) | 0.0216 (8) | 0.0372 (10) | 0.0015 (6) | 0.0062 (7) | 0.0095 (7) |
Geometric parameters (Å, °)
| In1—O1W | 2.3776 (15) | N7B—H71B | 0.86 |
| In1—Cl1 | 2.4718 (6) | N7B—H72B | 0.86 |
| In1—Cl5 | 2.4720 (6) | C4B—C5B | 1.344 (3) |
| In1—Cl4 | 2.4730 (6) | C4B—C3B | 1.413 (3) |
| In1—Cl3 | 2.4787 (6) | C4B—H4B | 0.93 |
| In1—Cl2 | 2.5155 (6) | C4A—C5A | 1.337 (3) |
| N2B—C3B | 1.349 (2) | C4A—C3A | 1.413 (3) |
| N2B—C1B | 1.381 (2) | C4A—H4A | 0.93 |
| N2B—H2B | 0.86 | C5B—H5B | 0.93 |
| O1B—C1B | 1.218 (2) | C3A—N7A | 1.311 (2) |
| N6A—C5A | 1.354 (2) | C3A—N2A | 1.355 (2) |
| N6A—C1A | 1.356 (3) | O1W—H1W | 0.80 (2) |
| N6A—H6A | 0.86 | O1W—H2W | 0.78 (3) |
| O1A—C1A | 1.218 (2) | C5A—H3A | 0.93 |
| N6B—C5B | 1.357 (2) | C1A—N2A | 1.379 (2) |
| N6B—C1B | 1.361 (2) | N7A—H72A | 0.86 |
| N6B—H6B | 0.86 | N7A—H71A | 0.86 |
| N7B—C3B | 1.310 (2) | N2A—H2A | 0.86 |
| O1W—In1—Cl1 | 175.07 (4) | N7B—C3B—N2B | 119.31 (17) |
| O1W—In1—Cl5 | 88.65 (4) | N7B—C3B—C4B | 123.05 (17) |
| Cl1—In1—Cl5 | 95.26 (2) | N2B—C3B—C4B | 117.64 (17) |
| O1W—In1—Cl4 | 86.45 (4) | C5A—C4A—C3A | 118.82 (17) |
| Cl1—In1—Cl4 | 96.55 (2) | C5A—C4A—H4A | 120.6 |
| Cl5—In1—Cl4 | 89.56 (2) | C3A—C4A—H4A | 120.6 |
| O1W—In1—Cl3 | 80.65 (4) | C4B—C5B—N6B | 121.53 (18) |
| Cl1—In1—Cl3 | 95.42 (2) | C4B—C5B—H5B | 119.2 |
| Cl5—In1—Cl3 | 169.296 (17) | N6B—C5B—H5B | 119.2 |
| Cl4—In1—Cl3 | 89.95 (2) | O1B—C1B—N6B | 123.31 (18) |
| O1W—In1—Cl2 | 83.91 (4) | O1B—C1B—N2B | 121.90 (18) |
| Cl1—In1—Cl2 | 93.21 (2) | N6B—C1B—N2B | 114.78 (16) |
| Cl5—In1—Cl2 | 88.07 (2) | N7A—C3A—N2A | 119.53 (17) |
| Cl4—In1—Cl2 | 170.125 (18) | N7A—C3A—C4A | 122.86 (18) |
| Cl3—In1—Cl2 | 90.60 (2) | N2A—C3A—C4A | 117.57 (17) |
| C3B—N2B—C1B | 124.87 (16) | In1—O1W—H1W | 114.4 (18) |
| C3B—N2B—H2B | 117.6 | In1—O1W—H2W | 115.7 (19) |
| C1B—N2B—H2B | 117.6 | H1W—O1W—H2W | 101 (2) |
| C5A—N6A—C1A | 123.24 (17) | C4A—C5A—N6A | 121.06 (18) |
| C5A—N6A—H6A | 118.4 | C4A—C5A—H3A | 119.5 |
| C1A—N6A—H6A | 118.4 | N6A—C5A—H3A | 119.5 |
| C5B—N6B—C1B | 122.77 (17) | O1A—C1A—N6A | 123.22 (18) |
| C5B—N6B—H6B | 118.6 | O1A—C1A—N2A | 121.78 (18) |
| C1B—N6B—H6B | 118.6 | N6A—C1A—N2A | 114.99 (17) |
| C3B—N7B—H71B | 120 | C3A—N7A—H72A | 120 |
| C3B—N7B—H72B | 120 | C3A—N7A—H71A | 120 |
| H71B—N7B—H72B | 120 | H72A—N7A—H71A | 120 |
| C5B—C4B—C3B | 118.37 (18) | C3A—N2A—C1A | 124.27 (16) |
| C5B—C4B—H4B | 120.8 | C3A—N2A—H2A | 117.9 |
| C3B—C4B—H4B | 120.8 | C1A—N2A—H2A | 117.9 |
| C1B—N2B—C3B—N7B | 176.87 (18) | C5A—C4A—C3A—N7A | 177.79 (19) |
| C1B—N2B—C3B—C4B | −2.5 (3) | C5A—C4A—C3A—N2A | 0.1 (3) |
| C5B—C4B—C3B—N7B | −178.07 (19) | C3A—C4A—C5A—N6A | 1.3 (3) |
| C5B—C4B—C3B—N2B | 1.2 (3) | C1A—N6A—C5A—C4A | −1.1 (3) |
| C3B—C4B—C5B—N6B | −0.2 (3) | C5A—N6A—C1A—O1A | −179.4 (2) |
| C1B—N6B—C5B—C4B | 0.2 (3) | C5A—N6A—C1A—N2A | −0.6 (3) |
| C5B—N6B—C1B—O1B | 179.6 (2) | N7A—C3A—N2A—C1A | −179.71 (19) |
| C5B—N6B—C1B—N2B | −1.2 (3) | C4A—C3A—N2A—C1A | −2.0 (3) |
| C3B—N2B—C1B—O1B | −178.40 (19) | O1A—C1A—N2A—C3A | −179.1 (2) |
| C3B—N2B—C1B—N6B | 2.4 (3) | N6A—C1A—N2A—C3A | 2.2 (3) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O1W—H1W···Cl1i | 0.80 (3) | 2.52 (3) | 3.3033 (17) | 167 (2) |
| N2A—H2A···Cl4ii | 0.86 | 2.41 | 3.2185 (18) | 156 |
| N2B—H2B···Cl2iii | 0.86 | 2.47 | 3.2774 (18) | 157 |
| O1W—H2W···Cl2ii | 0.78 (3) | 2.49 (3) | 3.2667 (18) | 174 (3) |
| N6A—H6A···Cl3iii | 0.86 | 2.37 | 3.2104 (17) | 164 |
| N6B—H6B···Cl5ii | 0.86 | 2.38 | 3.2160 (18) | 163 |
| N7A—H71A···O1Ai | 0.86 | 2.19 | 2.965 (3) | 150 |
| N7B—H71B···O1Wiii | 0.86 | 2.38 | 3.226 (3) | 168 |
| N7A—H72A···Cl1ii | 0.86 | 2.69 | 3.471 (2) | 152 |
| N7B—H72B···O1Biv | 0.86 | 2.22 | 2.987 (3) | 149 |
| C4A—H4A···O1Ai | 0.93 | 2.30 | 3.068 (3) | 140 |
| C4B—H4B···O1Biv | 0.93 | 2.28 | 3.051 (3) | 140 |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, −y+1, −z+1; (iii) −x+1, −y, −z+1; (iv) x+1, y, z.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5204).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811004235/lh5204sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004235/lh5204Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


