Abstract
The CdII ion in the title compound, [CdBr2(C13H19N3O)], is five-coordinated by the N,N′,N′′-tridentate Schiff base ligand and two Br atoms in a distorted square-pyramidal geometry. In the crystal, intermolecular C—H⋯O and C—H⋯Br hydrogen bonds link adjacent molecules into layers parallel to the ab plane. An intramolecular C—H⋯Br interaction is also observed.
Related literature
For the crystal structure of the analogous CdCl2 complex, see: Ikmal Hisham et al. (2010 ▶). For the crystal structures of similar CdBr2 complexes, see: Bermejo et al. (1999 ▶, 2003 ▶). For a description of the geometry of complexes with five-coordinate metal atoms, see: Addison et al. (1984 ▶).
Experimental
Crystal data
[CdBr2(C13H19N3O)]
M r = 505.53
Orthorhombic,
a = 9.1906 (8) Å
b = 12.2604 (10) Å
c = 14.7499 (12) Å
V = 1662.0 (2) Å3
Z = 4
Mo Kα radiation
μ = 6.12 mm−1
T = 100 K
0.33 × 0.27 × 0.19 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.237, T max = 0.389
20236 measured reflections
3642 independent reflections
3445 reflections with I > 2σ(I)
R int = 0.032
Refinement
R[F 2 > 2σ(F 2)] = 0.021
wR(F 2) = 0.041
S = 1.09
3642 reflections
182 parameters
H-atom parameters constrained
Δρmax = 0.73 e Å−3
Δρmin = −0.54 e Å−3
Absolute structure: Flack (1983 ▶), 1556 Friedel pairs
Flack parameter: 0.023 (9)
Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681100554X/bg2390sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053681100554X/bg2390Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C3—H3⋯O1i | 0.95 | 2.42 | 3.132 (4) | 131 |
| C7—H7B⋯Br1ii | 0.98 | 2.92 | 3.840 (4) | 157 |
| C10—H10A⋯O1iii | 0.99 | 2.45 | 3.383 (4) | 156 |
| C11—H11B⋯Br2 | 0.99 | 2.91 | 3.727 (4) | 141 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
The authors thank University of Malaya for funding this study (FRGS grant No. FP004/2010B).
supplementary crystallographic information
Comment
The title compound was obtained upon the reaction of 2-morpholino-N-[1-(2-pyridyl)ethylidene]ethanamine with CdII ion in the presence of potassium bromide. Similar to the structure of the analogous CdCl2 complex (Ikmal Hisham et al., 2010), the metal center is five-coordinated by the N,N',N"-tridentate Schiff base ligand and two halogen atoms. The geometry of the complexes can be determined by using the index τ = (β-α)/60, where β is the largest angle and α is the second one around the metal center. For an ideal square-pyramid τ is 0, while it is 1 in a perfect trigonal-bipyramid (Addison et al.,1984). The τ value in the present structure is calculated to be 0.18, indicative of a distorted square-pyramidal geometry. The Cd—Br bond lengths in the complex are in agreement with the values reported in the literature (Bermejo et al., 1999; Bermejo et al., 2003). In the crystal, the adjacent molecules are connected together via C—H···O and C—H···Br hydrogen bonds, forming infinite layers parallel to the ab plane. Moreover an intramolecluar C—H···Br occurs.
Experimental
A mixture of 2-acetylpyridine (0.20 g, 1.65 mmol) and 4-(2-aminoethyl)morpholine (0.21 g, 1.65 mmol) in ethanol (20 ml) was refluxed. After 2 hr a solution of cadmium(II) acetate dihydrate (0.44 g, 1.65 mmol) and potassium bromide (0.196 g, 1.65 mmol) in a minimum amount of water was added. The resulting solution was refluxed for 30 min, and then left at room temperature. The crystals of the title complex were obtained in a few days.
Refinement
H atoms were positioned geometrically (C-H: 0.95Å; C-H2: 0.99Å;C-H3: 0.98Å) and allowed to ride. Uiso(H) set to 1.2–1.5 Ueq(C).
Figures
Fig. 1.
Thermal ellipsoid plot of the title compound at the 50% probability level.
Crystal data
| [CdBr2(C13H19N3O)] | F(000) = 976 |
| Mr = 505.53 | Dx = 2.020 Mg m−3 |
| Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: P 2ac 2ab | Cell parameters from 5963 reflections |
| a = 9.1906 (8) Å | θ = 2.6–30.7° |
| b = 12.2604 (10) Å | µ = 6.12 mm−1 |
| c = 14.7499 (12) Å | T = 100 K |
| V = 1662.0 (2) Å3 | Block, colorless |
| Z = 4 | 0.33 × 0.27 × 0.19 mm |
Data collection
| Bruker APEXII CCD diffractometer | 3642 independent reflections |
| Radiation source: fine-focus sealed tube | 3445 reflections with I > 2σ(I) |
| graphite | Rint = 0.032 |
| φ and ω scans | θmax = 27.0°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −11→11 |
| Tmin = 0.237, Tmax = 0.389 | k = −15→15 |
| 20236 measured reflections | l = −18→18 |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.021 | H-atom parameters constrained |
| wR(F2) = 0.041 | w = 1/[σ2(Fo2) + (0.006P)2 + 1.6071P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.09 | (Δ/σ)max = 0.001 |
| 3642 reflections | Δρmax = 0.73 e Å−3 |
| 182 parameters | Δρmin = −0.54 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 1556 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.023 (9) |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cd1 | 0.03808 (2) | 0.00442 (2) | 0.919266 (13) | 0.01367 (5) | |
| Br1 | −0.21463 (3) | 0.00329 (4) | 0.84484 (2) | 0.02368 (7) | |
| Br2 | 0.07480 (3) | −0.00774 (4) | 1.092730 (19) | 0.02169 (7) | |
| O1 | −0.0135 (3) | −0.34931 (19) | 0.93888 (17) | 0.0151 (6) | |
| N1 | 0.0632 (3) | 0.1977 (2) | 0.90768 (19) | 0.0163 (6) | |
| N2 | 0.2634 (3) | 0.0505 (2) | 0.86157 (18) | 0.0143 (6) | |
| N3 | 0.1405 (3) | −0.1675 (2) | 0.85991 (18) | 0.0127 (6) | |
| C1 | −0.0399 (4) | 0.2704 (3) | 0.9296 (2) | 0.0194 (7) | |
| H1 | −0.1334 | 0.2443 | 0.9463 | 0.023* | |
| C2 | −0.0157 (5) | 0.3826 (3) | 0.9291 (3) | 0.0225 (9) | |
| H2 | −0.0908 | 0.4322 | 0.9451 | 0.027* | |
| C3 | 0.1197 (4) | 0.4192 (3) | 0.9049 (3) | 0.0240 (8) | |
| H3 | 0.1400 | 0.4951 | 0.9051 | 0.029* | |
| C4 | 0.2272 (4) | 0.3455 (3) | 0.8800 (2) | 0.0209 (8) | |
| H4 | 0.3206 | 0.3701 | 0.8616 | 0.025* | |
| C5 | 0.1948 (4) | 0.2342 (3) | 0.8827 (2) | 0.0145 (7) | |
| C6 | 0.3044 (4) | 0.1495 (3) | 0.8549 (2) | 0.0146 (7) | |
| C7 | 0.4496 (4) | 0.1874 (3) | 0.8209 (3) | 0.0253 (8) | |
| H7A | 0.4380 | 0.2199 | 0.7606 | 0.038* | |
| H7B | 0.5162 | 0.1252 | 0.8172 | 0.038* | |
| H7C | 0.4894 | 0.2420 | 0.8627 | 0.038* | |
| C8 | 0.3532 (4) | −0.0426 (2) | 0.8376 (2) | 0.0164 (7) | |
| H8A | 0.4034 | −0.0709 | 0.8922 | 0.020* | |
| H8B | 0.4278 | −0.0207 | 0.7928 | 0.020* | |
| C9 | 0.2553 (4) | −0.1303 (3) | 0.7977 (2) | 0.0176 (7) | |
| H9A | 0.2093 | −0.1016 | 0.7419 | 0.021* | |
| H9B | 0.3160 | −0.1937 | 0.7802 | 0.021* | |
| C10 | 0.2041 (4) | −0.2361 (3) | 0.9323 (2) | 0.0167 (7) | |
| H10A | 0.2692 | −0.1912 | 0.9705 | 0.020* | |
| H10B | 0.2630 | −0.2950 | 0.9047 | 0.020* | |
| C11 | 0.0853 (4) | −0.2858 (3) | 0.9907 (2) | 0.0181 (7) | |
| H11A | 0.1303 | −0.3323 | 1.0378 | 0.022* | |
| H11B | 0.0313 | −0.2267 | 1.0217 | 0.022* | |
| C12 | −0.0787 (4) | −0.2837 (3) | 0.8695 (2) | 0.0177 (7) | |
| H12A | −0.1356 | −0.2242 | 0.8978 | 0.021* | |
| H12B | −0.1463 | −0.3290 | 0.8333 | 0.021* | |
| C13 | 0.0361 (4) | −0.2354 (3) | 0.8079 (2) | 0.0174 (7) | |
| H13A | 0.0894 | −0.2950 | 0.7770 | 0.021* | |
| H13B | −0.0114 | −0.1901 | 0.7609 | 0.021* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cd1 | 0.01446 (9) | 0.01227 (9) | 0.01429 (9) | 0.00005 (13) | 0.00293 (7) | 0.00048 (13) |
| Br1 | 0.01711 (14) | 0.02244 (15) | 0.03150 (16) | 0.0017 (2) | −0.00424 (12) | 0.0024 (2) |
| Br2 | 0.02749 (16) | 0.02287 (17) | 0.01472 (13) | 0.00513 (19) | −0.00019 (11) | −0.00188 (19) |
| O1 | 0.0147 (14) | 0.0118 (11) | 0.0190 (14) | −0.0018 (10) | −0.0005 (10) | 0.0025 (10) |
| N1 | 0.0184 (15) | 0.0152 (13) | 0.0154 (14) | 0.0012 (11) | 0.0020 (12) | 0.0039 (11) |
| N2 | 0.0147 (15) | 0.0163 (13) | 0.0120 (13) | 0.0018 (11) | 0.0003 (11) | 0.0003 (11) |
| N3 | 0.0155 (14) | 0.0100 (13) | 0.0128 (14) | −0.0002 (11) | 0.0015 (11) | 0.0010 (11) |
| C1 | 0.0217 (18) | 0.0191 (16) | 0.0173 (18) | 0.0019 (15) | 0.0056 (15) | 0.0012 (14) |
| C2 | 0.032 (2) | 0.0147 (16) | 0.021 (2) | 0.0080 (16) | −0.0011 (17) | 0.0001 (15) |
| C3 | 0.034 (2) | 0.0116 (15) | 0.027 (2) | −0.0018 (14) | −0.0087 (17) | −0.0008 (15) |
| C4 | 0.0203 (18) | 0.0163 (17) | 0.0260 (19) | −0.0043 (14) | −0.0043 (15) | 0.0000 (14) |
| C5 | 0.0152 (18) | 0.0154 (16) | 0.0128 (17) | 0.0028 (13) | −0.0030 (15) | 0.0017 (14) |
| C6 | 0.0145 (17) | 0.0176 (16) | 0.0116 (16) | −0.0009 (13) | −0.0011 (13) | 0.0041 (13) |
| C7 | 0.0204 (19) | 0.0187 (17) | 0.037 (2) | −0.0055 (15) | 0.0066 (17) | 0.0005 (15) |
| C8 | 0.0134 (17) | 0.0135 (15) | 0.0224 (18) | 0.0018 (12) | 0.0040 (14) | 0.0031 (13) |
| C9 | 0.0202 (18) | 0.0164 (17) | 0.0162 (17) | 0.0017 (13) | 0.0064 (14) | −0.0013 (14) |
| C10 | 0.0169 (17) | 0.0155 (16) | 0.0178 (18) | 0.0023 (13) | −0.0007 (15) | 0.0045 (14) |
| C11 | 0.0149 (17) | 0.0172 (17) | 0.0223 (18) | −0.0020 (13) | −0.0011 (14) | 0.0052 (14) |
| C12 | 0.0183 (18) | 0.0150 (16) | 0.0198 (18) | −0.0016 (13) | −0.0013 (15) | −0.0005 (13) |
| C13 | 0.0210 (18) | 0.0165 (16) | 0.0147 (16) | 0.0011 (14) | −0.0007 (14) | −0.0049 (13) |
Geometric parameters (Å, °)
| Cd1—N2 | 2.309 (3) | C4—H4 | 0.9500 |
| Cd1—N1 | 2.388 (3) | C5—C6 | 1.504 (5) |
| Cd1—N3 | 2.469 (3) | C6—C7 | 1.500 (5) |
| Cd1—Br1 | 2.5690 (4) | C7—H7A | 0.9800 |
| Cd1—Br2 | 2.5851 (4) | C7—H7B | 0.9800 |
| O1—C11 | 1.420 (4) | C7—H7C | 0.9800 |
| O1—C12 | 1.433 (4) | C8—C9 | 1.520 (5) |
| N1—C1 | 1.340 (4) | C8—H8A | 0.9900 |
| N1—C5 | 1.341 (4) | C8—H8B | 0.9900 |
| N2—C6 | 1.275 (4) | C9—H9A | 0.9900 |
| N2—C8 | 1.452 (4) | C9—H9B | 0.9900 |
| N3—C9 | 1.471 (4) | C10—C11 | 1.518 (5) |
| N3—C10 | 1.479 (4) | C10—H10A | 0.9900 |
| N3—C13 | 1.484 (4) | C10—H10B | 0.9900 |
| C1—C2 | 1.393 (5) | C11—H11A | 0.9900 |
| C1—H1 | 0.9500 | C11—H11B | 0.9900 |
| C2—C3 | 1.370 (6) | C12—C13 | 1.514 (5) |
| C2—H2 | 0.9500 | C12—H12A | 0.9900 |
| C3—C4 | 1.388 (5) | C12—H12B | 0.9900 |
| C3—H3 | 0.9500 | C13—H13A | 0.9900 |
| C4—C5 | 1.397 (5) | C13—H13B | 0.9900 |
| N2—Cd1—N1 | 69.15 (9) | C6—C7—H7B | 109.5 |
| N2—Cd1—N3 | 74.71 (9) | H7A—C7—H7B | 109.5 |
| N1—Cd1—N3 | 141.76 (9) | C6—C7—H7C | 109.5 |
| N2—Cd1—Br1 | 130.89 (7) | H7A—C7—H7C | 109.5 |
| N1—Cd1—Br1 | 93.56 (7) | H7B—C7—H7C | 109.5 |
| N3—Cd1—Br1 | 100.87 (6) | N2—C8—C9 | 108.3 (3) |
| N2—Cd1—Br2 | 105.18 (7) | N2—C8—H8A | 110.0 |
| N1—Cd1—Br2 | 96.63 (7) | C9—C8—H8A | 110.0 |
| N3—Cd1—Br2 | 104.59 (6) | N2—C8—H8B | 110.0 |
| Br1—Cd1—Br2 | 122.729 (12) | C9—C8—H8B | 110.0 |
| C11—O1—C12 | 110.1 (2) | H8A—C8—H8B | 108.4 |
| C1—N1—C5 | 118.8 (3) | N3—C9—C8 | 113.7 (3) |
| C1—N1—Cd1 | 125.1 (2) | N3—C9—H9A | 108.8 |
| C5—N1—Cd1 | 116.0 (2) | C8—C9—H9A | 108.8 |
| C6—N2—C8 | 124.2 (3) | N3—C9—H9B | 108.8 |
| C6—N2—Cd1 | 121.8 (2) | C8—C9—H9B | 108.8 |
| C8—N2—Cd1 | 114.02 (19) | H9A—C9—H9B | 107.7 |
| C9—N3—C10 | 110.1 (3) | N3—C10—C11 | 110.7 (3) |
| C9—N3—C13 | 108.4 (3) | N3—C10—H10A | 109.5 |
| C10—N3—C13 | 108.1 (2) | C11—C10—H10A | 109.5 |
| C9—N3—Cd1 | 103.29 (18) | N3—C10—H10B | 109.5 |
| C10—N3—Cd1 | 112.3 (2) | C11—C10—H10B | 109.5 |
| C13—N3—Cd1 | 114.57 (19) | H10A—C10—H10B | 108.1 |
| N1—C1—C2 | 122.8 (3) | O1—C11—C10 | 112.0 (3) |
| N1—C1—H1 | 118.6 | O1—C11—H11A | 109.2 |
| C2—C1—H1 | 118.6 | C10—C11—H11A | 109.2 |
| C3—C2—C1 | 118.0 (4) | O1—C11—H11B | 109.2 |
| C3—C2—H2 | 121.0 | C10—C11—H11B | 109.2 |
| C1—C2—H2 | 121.0 | H11A—C11—H11B | 107.9 |
| C2—C3—C4 | 120.1 (3) | O1—C12—C13 | 110.9 (3) |
| C2—C3—H3 | 119.9 | O1—C12—H12A | 109.5 |
| C4—C3—H3 | 119.9 | C13—C12—H12A | 109.5 |
| C3—C4—C5 | 118.4 (3) | O1—C12—H12B | 109.5 |
| C3—C4—H4 | 120.8 | C13—C12—H12B | 109.5 |
| C5—C4—H4 | 120.8 | H12A—C12—H12B | 108.0 |
| N1—C5—C4 | 121.7 (3) | N3—C13—C12 | 111.1 (3) |
| N1—C5—C6 | 116.6 (3) | N3—C13—H13A | 109.4 |
| C4—C5—C6 | 121.6 (3) | C12—C13—H13A | 109.4 |
| N2—C6—C7 | 125.7 (3) | N3—C13—H13B | 109.4 |
| N2—C6—C5 | 116.0 (3) | C12—C13—H13B | 109.4 |
| C7—C6—C5 | 118.2 (3) | H13A—C13—H13B | 108.0 |
| C6—C7—H7A | 109.5 |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C3—H3···O1i | 0.95 | 2.42 | 3.132 (4) | 131 |
| C7—H7B···Br1ii | 0.98 | 2.92 | 3.840 (4) | 157 |
| C10—H10A···O1iii | 0.99 | 2.45 | 3.383 (4) | 156 |
| C11—H11B···Br2 | 0.99 | 2.91 | 3.727 (4) | 141 |
Symmetry codes: (i) x, y+1, z; (ii) x+1, y, z; (iii) x+1/2, −y−1/2, −z+2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BG2390).
References
- Addison, A. W., Rao, T. N., Reedijk, J., Rijn, V. J. & Verschoor, G. C. (1984). J. Chem. Soc. Dalton Trans. pp. 1349–1356.
- Barbour, L. J. (2001). J. Supramol. Chem, 1, 189–191.
- Bermejo, E., Carballo, R., Castineiras, A., Dominguez, R., Liberta, A. E., Maichle-Moessmer, C., Salberg, M. M. & West, D. X. (1999). Eur. J. Inorg. Chem. pp. 965–973.
- Bermejo, E., Castineiras, A., Fostiak, L. M., Santos, I. G., Swearingen, J. K. & West, D. X. (2003). Polyhedron, 23, 2303–2313.
- Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Flack, H. D. (1983). Acta Cryst. A39, 876–881.
- Ikmal Hisham, N., Suleiman Gwaram, N., Khaledi, H. & Mohd Ali, H. (2010). Acta Cryst. E66, m1471. [DOI] [PMC free article] [PubMed]
- Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681100554X/bg2390sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S160053681100554X/bg2390Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

