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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Feb 5;67(Pt 3):m305. doi: 10.1107/S1600536811004041

(6,6′-Dimethyl-2,2′-bipyridine-κ2 N,N′)diiodidomercury(II)

Robabeh Alizadeh a,*, Sara Seifi a, Vahid Amani b
PMCID: PMC3052018  PMID: 21522242

Abstract

In the title complex, [HgI2(C12H12N2)], the HgII atom has a distorted tetra­hedral coordination formed by two N atoms of the 6,6′-dimethyl-2,2′-bipyridine ligand and two terminal I atoms [N—Hg—N = 70.1 (2) and I—Hg—I = 130.59 (3)°]. The crystal packing features π–π contacts between the pyridine rings of adjacent mol­ecules [centroid–centroid distance = 3.773 (5) Å] and also between a pyridine ring of one mol­ecule and the five-membered chelate ring of an adjacent mol­ecule [centroid–centroid distance = 3.668 (4) Å].

Related literature

For the structures of metal complexes with a 6,6′-dimethyl-2,2′-bipyridine ligand, see: Akbarzadeh Torbati et al. (2010); Alizadeh et al. (2010); Alizadeh, Kalateh, Ebadi et al. (2009); Alizadeh, Kalateh, Khoshtarkib et al. (2009); Alizadeh, Khoshtarkib et al. (2009); Itoh et al. (2005); Kou et al. (2008); Onggo et al. (2005).graphic file with name e-67-0m305-scheme1.jpg

Experimental

Crystal data

  • [HgI2(C12H12N2)]

  • M r = 638.63

  • Monoclinic, Inline graphic

  • a = 8.8096 (18) Å

  • b = 12.025 (2) Å

  • c = 14.693 (3) Å

  • β = 101.88 (3)°

  • V = 1523.2 (5) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 14.14 mm−1

  • T = 298 K

  • 0.16 × 0.15 × 0.12 mm

Data collection

  • Bruker APEXII CCD area-detector diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2001) T min = 0.128, T max = 0.186

  • 9361 measured reflections

  • 4057 independent reflections

  • 3409 reflections with I > 2σ(I)

  • R int = 0.051

Refinement

  • R[F 2 > 2σ(F 2)] = 0.040

  • wR(F 2) = 0.095

  • S = 1.10

  • 4057 reflections

  • 154 parameters

  • H-atom parameters constrained

  • Δρmax = 1.22 e Å−3

  • Δρmin = −1.23 e Å−3

Data collection: APEX2 (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).

Supplementary Material

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811004041/ya2136sup1.cif

e-67-0m305-sup1.cif (16.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004041/ya2136Isup2.hkl

e-67-0m305-Isup2.hkl (194.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

N1—Hg1 2.380 (5)
N2—Hg1 2.381 (6)
I1—Hg1 2.6503 (10)
I2—Hg1 2.6876 (7)

Acknowledgments

The authors are grateful to Damghan University for financial support.

supplementary crystallographic information

Comment

6,6'-Dimethyl-2,2'-bipyridine (6,6'-dmbipy) is a rather widely used bidentate ligand, and complexes of different metals with 6,6'-dmbipy have been prepared, e.g. those of cobalt (Akbarzadeh Torbati et al., 2010),cadmium (Alizadeh et al., 2010),zinc (Alizadeh, Kalateh, Ebadi et al., 2009; Alizadeh, Kalateh, Khoshtarkib et al., 2009; Alizadeh, Khoshtarkib et al., 2009), copper (Itoh et al., 2005), nickel (Kou et al., 2008), and ruthenium (Onggo et al., 2005). We report herein the synthesis and first crystal structure of the mercury complex of this ligand (Fig. 1).

The Hg1 atom has a distorted tetrahedral coordination formed by atoms N1 and N2 of the 6,6'-dimethyl-2,2'-bipyridine ligand and terminal I1 and I2 atoms [N—Hg—N 70.1 (2)°; I—Hg—I 130.59 (3)°; see Table 1 for bond lengths involving Hg1].

In the crystal structure, intermolecular /p-/p contacts (Fig. 2) between the pyridine rings and also between pyridine ring and chelate ring of the adjacent molecules may stabilize the structure: the centroid-centroid distances Cg1—Cg2i and Cg2—Cg3i are equal to 3.668 (4) and 3.773 (5)Å respectively [Cg1, Cg2 and Cg3 represent centroids of the rings (Hg1/N1/C6/C7/N2), (N1/C2—C6), and (N2/C7—C11); symmetry code (i): 2 - x,1 - y,-z].

Experimental

For the preparation of the title compound, a solution of 6,6'-dimethyl-2,2'-bipyridine (0.28 g, 1.50 mmol) in acetonitrile (10 ml) was added to a solution of HgI2 (0.68 g, 1.50 mmol) in methanol (10 ml), and the resulting colorless mixture was stirred for 30 min at 313 K. It was then left to evaporate slowly at room temperature. After six days, colorless prismatic crystals of the title compound, suitable for X-ray diffraction experiment, were isolated (yield 0.71 g; 74.1%).

Refinement

All H atoms were positioned geometrically, with C—H 0.93 and 0.96 Å for aromatics and methyl hydrogen atoms, respectively, and constrained to ride on their parent atoms, with Uiso(H)=1.2Ueq. The highest residual density peak and the deepest hole (1.22 and -1.23 e A°-3) are located at distances of 0.83 and 0.82 Å from the Hg1 atom respectively.

Figures

Fig. 1.

Fig. 1.

Molecular structure of the title compound;. displacement ellipsoids are drawn at the 30% probability level.

Fig. 2.

Fig. 2.

Packing diagram for the crystal of the title compound viewed along the a axis.

Crystal data

[HgI2(C12H12N2)] F(000) = 1136
Mr = 638.63 Dx = 2.785 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yn Cell parameters from 1223 reflections
a = 8.8096 (18) Å θ = 2.2–29.2°
b = 12.025 (2) Å µ = 14.14 mm1
c = 14.693 (3) Å T = 298 K
β = 101.88 (3)° Prism, colorless
V = 1523.2 (5) Å3 0.16 × 0.15 × 0.12 mm
Z = 4

Data collection

Bruker APEXII CCD area-detector diffractometer 4057 independent reflections
Radiation source: fine-focus sealed tube 3409 reflections with I > 2σ(I)
graphite Rint = 0.051
φ and ω scans θmax = 29.2°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2001) h = −11→12
Tmin = 0.128, Tmax = 0.186 k = −16→13
9361 measured reflections l = −20→17

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095 H-atom parameters constrained
S = 1.10 w = 1/[σ2(Fo2) + (0.0397P)2 + 3.5854P] where P = (Fo2 + 2Fc2)/3
4057 reflections (Δ/σ)max = 0.001
154 parameters Δρmax = 1.22 e Å3
0 restraints Δρmin = −1.23 e Å3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
C1 0.6805 (9) 0.4904 (8) 0.1498 (7) 0.065 (2)
H1A 0.6238 0.5560 0.1595 0.077*
H1B 0.7749 0.4868 0.1960 0.077*
H1C 0.6186 0.4258 0.1547 0.077*
C2 0.7174 (7) 0.4943 (6) 0.0569 (5) 0.0493 (16)
C3 0.6678 (9) 0.4111 (7) −0.0091 (6) 0.061 (2)
H3 0.6079 0.3520 0.0042 0.073*
C4 0.7097 (10) 0.4188 (7) −0.0941 (7) 0.069 (2)
H4 0.6773 0.3644 −0.1388 0.083*
C5 0.7983 (9) 0.5055 (7) −0.1137 (6) 0.060 (2)
H5 0.8272 0.5100 −0.1710 0.072*
C6 0.8444 (7) 0.5869 (6) −0.0461 (5) 0.0478 (15)
C7 0.9441 (7) 0.6807 (6) −0.0608 (4) 0.0445 (14)
C8 0.9964 (10) 0.6955 (9) −0.1438 (6) 0.066 (2)
H8 0.9628 0.6477 −0.1936 0.079*
C9 1.0961 (13) 0.7794 (10) −0.1518 (8) 0.080 (3)
H9 1.1294 0.7900 −0.2073 0.096*
C10 1.1474 (10) 0.8489 (8) −0.0772 (8) 0.074 (3)
H10 1.2190 0.9046 −0.0812 0.089*
C11 1.0915 (9) 0.8353 (7) 0.0045 (7) 0.0592 (19)
C12 1.1391 (11) 0.9092 (8) 0.0862 (8) 0.079 (3)
H12A 1.1882 0.8659 0.1389 0.094*
H12B 1.0493 0.9456 0.0998 0.094*
H12C 1.2106 0.9640 0.0728 0.094*
N1 0.8032 (6) 0.5792 (4) 0.0366 (4) 0.0399 (11)
N2 0.9903 (6) 0.7526 (5) 0.0104 (4) 0.0452 (12)
I1 1.05284 (6) 0.68838 (5) 0.30203 (4) 0.06506 (16)
I2 0.61128 (6) 0.85868 (4) 0.09788 (4) 0.05659 (14)
Hg1 0.86805 (3) 0.73253 (2) 0.139654 (19) 0.04718 (9)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
C1 0.051 (4) 0.060 (5) 0.081 (6) −0.010 (3) 0.009 (4) 0.019 (4)
C2 0.041 (3) 0.037 (3) 0.066 (4) 0.003 (2) 0.003 (3) 0.005 (3)
C3 0.047 (3) 0.045 (4) 0.082 (6) 0.004 (3) −0.005 (4) −0.010 (4)
C4 0.062 (4) 0.056 (5) 0.077 (6) 0.008 (4) −0.012 (4) −0.027 (4)
C5 0.057 (4) 0.068 (5) 0.051 (4) 0.014 (4) 0.004 (3) −0.018 (4)
C6 0.041 (3) 0.058 (4) 0.042 (3) 0.019 (3) 0.002 (2) −0.005 (3)
C7 0.045 (3) 0.051 (4) 0.039 (3) 0.014 (3) 0.012 (2) 0.006 (3)
C8 0.066 (5) 0.088 (6) 0.047 (4) 0.020 (4) 0.020 (4) 0.009 (4)
C9 0.087 (6) 0.094 (8) 0.070 (6) 0.019 (6) 0.041 (5) 0.034 (6)
C10 0.062 (5) 0.065 (6) 0.107 (8) 0.009 (4) 0.046 (5) 0.028 (5)
C11 0.050 (4) 0.045 (4) 0.088 (6) 0.003 (3) 0.026 (4) 0.017 (4)
C12 0.074 (6) 0.053 (5) 0.116 (8) −0.016 (4) 0.034 (6) −0.012 (5)
N1 0.038 (2) 0.036 (3) 0.045 (3) 0.005 (2) 0.006 (2) −0.002 (2)
N2 0.045 (3) 0.040 (3) 0.054 (3) 0.006 (2) 0.021 (2) 0.006 (2)
I1 0.0656 (3) 0.0743 (4) 0.0493 (3) 0.0076 (3) −0.0020 (2) −0.0064 (2)
I2 0.0534 (2) 0.0536 (3) 0.0609 (3) 0.0024 (2) 0.0073 (2) −0.0054 (2)
Hg1 0.05023 (14) 0.04953 (15) 0.04286 (13) −0.00229 (11) 0.01209 (10) −0.00399 (11)

Geometric parameters (Å, °)

C1—C2 1.468 (12) C8—C9 1.359 (15)
C1—H1A 0.9600 C8—H8 0.9300
C1—H1B 0.9600 C9—C10 1.379 (16)
C1—H1C 0.9600 C9—H9 0.9300
C2—N1 1.340 (9) C10—C11 1.398 (13)
C2—C3 1.399 (10) C10—H10 0.9300
C3—C4 1.377 (14) C11—N2 1.351 (9)
C3—H3 0.9300 C11—C12 1.483 (14)
C4—C5 1.367 (13) C12—H12A 0.9600
C4—H4 0.9300 C12—H12B 0.9600
C5—C6 1.394 (10) C12—H12C 0.9600
C5—H5 0.9300 N1—Hg1 2.380 (5)
C6—N1 1.341 (9) N2—Hg1 2.381 (6)
C6—C7 1.473 (11) I1—Hg1 2.6503 (10)
C7—N2 1.354 (9) I2—Hg1 2.6876 (7)
C7—C8 1.401 (10)
C2—C1—H1A 109.5 C8—C9—C10 119.5 (9)
C2—C1—H1B 109.5 C8—C9—H9 120.2
H1A—C1—H1B 109.5 C10—C9—H9 120.2
C2—C1—H1C 109.5 C9—C10—C11 119.8 (9)
H1A—C1—H1C 109.5 C9—C10—H10 120.1
H1B—C1—H1C 109.5 C11—C10—H10 120.1
N1—C2—C3 120.0 (8) N2—C11—C10 119.7 (9)
N1—C2—C1 118.4 (7) N2—C11—C12 118.1 (8)
C3—C2—C1 121.6 (7) C10—C11—C12 122.3 (8)
C4—C3—C2 118.5 (8) C11—C12—H12A 109.5
C4—C3—H3 120.8 C11—C12—H12B 109.5
C2—C3—H3 120.8 H12A—C12—H12B 109.5
C5—C4—C3 120.9 (8) C11—C12—H12C 109.5
C5—C4—H4 119.5 H12A—C12—H12C 109.5
C3—C4—H4 119.5 H12B—C12—H12C 109.5
C4—C5—C6 118.7 (8) C2—N1—C6 121.6 (6)
C4—C5—H5 120.6 C2—N1—Hg1 121.4 (5)
C6—C5—H5 120.6 C6—N1—Hg1 116.7 (5)
N1—C6—C5 120.2 (8) C11—N2—C7 121.2 (7)
N1—C6—C7 117.8 (6) C11—N2—Hg1 122.6 (6)
C5—C6—C7 121.9 (7) C7—N2—Hg1 116.0 (4)
N2—C7—C8 119.4 (7) N1—Hg1—N2 70.1 (2)
N2—C7—C6 118.0 (6) N1—Hg1—I1 116.12 (12)
C8—C7—C6 122.6 (7) N2—Hg1—I1 116.33 (14)
C9—C8—C7 120.3 (9) N1—Hg1—I2 102.20 (12)
C9—C8—H8 119.8 N2—Hg1—I2 104.98 (13)
C7—C8—H8 119.8 I1—Hg1—I2 130.59 (3)
N1—C2—C3—C4 0.3 (10) C5—C6—N1—Hg1 −174.1 (5)
C1—C2—C3—C4 −178.5 (7) C7—C6—N1—Hg1 8.4 (7)
C2—C3—C4—C5 0.2 (12) C10—C11—N2—C7 1.4 (11)
C3—C4—C5—C6 −0.7 (12) C12—C11—N2—C7 −178.7 (7)
C4—C5—C6—N1 0.6 (10) C10—C11—N2—Hg1 −173.7 (6)
C4—C5—C6—C7 177.9 (6) C12—C11—N2—Hg1 6.2 (10)
N1—C6—C7—N2 1.0 (8) C8—C7—N2—C11 −3.1 (10)
C5—C6—C7—N2 −176.4 (6) C6—C7—N2—C11 174.8 (6)
N1—C6—C7—C8 178.7 (6) C8—C7—N2—Hg1 172.3 (5)
C5—C6—C7—C8 1.3 (10) C6—C7—N2—Hg1 −9.8 (7)
N2—C7—C8—C9 1.8 (11) C2—N1—Hg1—N2 176.3 (5)
C6—C7—C8—C9 −175.9 (8) C6—N1—Hg1—N2 −9.7 (4)
C7—C8—C9—C10 1.1 (14) C2—N1—Hg1—I1 65.9 (5)
C8—C9—C10—C11 −2.7 (15) C6—N1—Hg1—I1 −120.0 (4)
C9—C10—C11—N2 1.5 (13) C2—N1—Hg1—I2 −82.0 (4)
C9—C10—C11—C12 −178.4 (9) C6—N1—Hg1—I2 92.1 (4)
C3—C2—N1—C6 −0.4 (9) C11—N2—Hg1—N1 −174.6 (6)
C1—C2—N1—C6 178.5 (6) C7—N2—Hg1—N1 10.1 (4)
C3—C2—N1—Hg1 173.4 (5) C11—N2—Hg1—I1 −64.5 (6)
C1—C2—N1—Hg1 −7.8 (8) C7—N2—Hg1—I1 120.2 (4)
C5—C6—N1—C2 −0.1 (9) C11—N2—Hg1—I2 87.6 (5)
C7—C6—N1—C2 −177.5 (5) C7—N2—Hg1—I2 −87.7 (4)

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: YA2136).

References

  1. Akbarzadeh Torbati, N., Rezvani, A. R., Safari, N., Saravani, H. & Amani, V. (2010). Acta Cryst. E66, m1284. [DOI] [PMC free article] [PubMed]
  2. Alizadeh, R., Mohammadi Eshlaghi, P. & Amani, V. (2010). Acta Cryst. E66, m1024. [DOI] [PMC free article] [PubMed]
  3. Alizadeh, R., Kalateh, K., Ebadi, A., Ahmadi, R. & Amani, V. (2009). Acta Cryst. E65, m1250. [DOI] [PMC free article] [PubMed]
  4. Alizadeh, R., Kalateh, K., Khoshtarkib, Z., Ahmadi, R. & Amani, V. (2009). Acta Cryst. E65, m1439–m1440. [DOI] [PMC free article] [PubMed]
  5. Alizadeh, R., Khoshtarkib, Z., Chegeni, K., Ebadi, A. & Amani, V. (2009). Acta Cryst. E65, m1311. [DOI] [PMC free article] [PubMed]
  6. Bruker (2001). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  7. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  8. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  9. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
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  12. Onggo, D., Scudder, M. L., Craig, D. C. & Goodwin, H. A. (2005). J. Mol. Struct. 738, 129–136.
  13. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811004041/ya2136sup1.cif

e-67-0m305-sup1.cif (16.9KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004041/ya2136Isup2.hkl

e-67-0m305-Isup2.hkl (194.8KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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