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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Feb 26;67(Pt 3):o725. doi: 10.1107/S1600536811005861

1-(1H-Imidazo[4,5-f][1,10]phenan­throlin-2-yl)naphthalen-2-ol

Xiu-Yan Wang a,*, Shuai Ma a, Yu He a
PMCID: PMC3052124  PMID: 21522467

Abstract

In the title mol­ecule, C23H14N4O, the dihedral angle between the pyridine rings of the phenanthroline unit is 4.43 (8)° and the dihedral angle formed by the nine essentially planar [maximum deviation 0.0389 (16)Å] non-H atoms of the benzimidazole unit and the naphthalene ring system is 74.22 (5)°. In the crystal, mol­ecules are linked by inter­molecular N—H⋯N and O—H⋯N hydrogen bonds, forming a three-dimensional network.

Related literature

For background to the coordination chemistry of 1,10-phenanthroline derivatives, see: Wang et al. (2010). For the synthetic procedure, see: Steck & Day (1943).graphic file with name e-67-0o725-scheme1.jpg

Experimental

Crystal data

  • C23H14N4O

  • M r = 362.38

  • Tetragonal, Inline graphic

  • a = 22.5800 (4) Å

  • c = 13.7196 (5) Å

  • V = 6995.0 (3) Å3

  • Z = 16

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 293 K

  • 0.30 × 0.21 × 0.18 mm

Data collection

  • Bruker APEX diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996) T min = 0.41, T max = 0.72

  • 18374 measured reflections

  • 3433 independent reflections

  • 3153 reflections with I > 2σ(I)

  • R int = 0.022

Refinement

  • R[F 2 > 2σ(F 2)] = 0.031

  • wR(F 2) = 0.081

  • S = 1.06

  • 3433 reflections

  • 253 parameters

  • 1 restraint

  • H-atom parameters constrained

  • Δρmax = 0.12 e Å−3

  • Δρmin = −0.14 e Å−3

  • Absolute structure: Flack (1983), 1629 Friedel pairs

  • Flack parameter: 0.0 (13)

Data collection: SMART (Bruker, 1997); cell refinement: SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811005861/lh5209sup1.cif

e-67-0o725-sup1.cif (19KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005861/lh5209Isup2.hkl

e-67-0o725-Isup2.hkl (165.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
N4—H4⋯N2i 0.86 2.17 2.9361 (19) 149
N4—H4⋯N1i 0.86 2.50 3.191 (2) 138
O1—H1⋯N3ii 0.82 2.01 2.7203 (17) 145

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank the Key Laboratory of Preparation and Applications of Environmentally Friendly Materials and the Institute Foundation of Siping City (No. 2009011) for supporting this work.

supplementary crystallographic information

Comment

1,10-Phenanthroline and its derivatives, are potentially important chelating ligands with excellent coordinating abilities and have been extensively used to build supramolecular architectures (Wang et al., 2010). We report herein the synthesis and crystal structure of the title compound

The molecular structure of the title compound is shown in Fig. 1. The dihedral angle between the pyridine rings of the phenanthroline unit [N2/C4-C8 and N1/C1/C2/C3/C11/C23] is 4.43 (8)Å and the dihedral angle formed by the nine essentially planar non-hydrogen atoms of the benzimidazole unit [C3/C4/C8-C12; maximum deviation 0.0389 (16)Å for C4] and the naphthalene ring system is 74.22 (5)°. In the crystal, molecules are linked by intermolecular N—H···N and O—H···N hydrogen bonds to form a three-dimensional network.

Experimental

The title compound was synthesized according to the literature method of Steck & Day (1943). We carried out the following reaction but the unreacted title compound was found in the reaction vessel. A mixture of Bi(NO3)3.5H2O (0.5 mmol) and L (0.5 mmol) in 10 mL distilled water was heated at 463 K in a Teflon-lined stainless steel autoclave for three days. The reaction system was then slowly cooled to room temperature. Pale yellow crystals suitable for single crystal X-ray diffraction analysis were collected from the final reaction system.

Refinement

All H atoms were positioned geometrically (N—H = 0.86, C—H = 0.93 and O—H = 0.82 Å ) and refined as riding, with Uiso(H) = 1.2Ueq(C,N) or Uiso(H) = 1.5Ueq(O).

Figures

Fig. 1.

Fig. 1.

The molecular structure of of the title compound showing displacement ellipsoids drawn at the 30% probability.

Crystal data

C23H14N4O Dx = 1.376 Mg m3
Mr = 362.38 Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41cd Cell parameters from 3433 reflections
Hall symbol: I 4bw -2c θ = 1.8–26.0°
a = 22.5800 (4) Å µ = 0.09 mm1
c = 13.7196 (5) Å T = 293 K
V = 6995.0 (3) Å3 Block, pale yellow
Z = 16 0.30 × 0.21 × 0.18 mm
F(000) = 3008

Data collection

Bruker APEX diffractometer 3433 independent reflections
Radiation source: fine-focus sealed tube 3153 reflections with I > 2σ(I)
graphite Rint = 0.022
φ and ω scans θmax = 26.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) h = −27→27
Tmin = 0.41, Tmax = 0.72 k = −27→20
18374 measured reflections l = −16→16

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.031 H-atom parameters constrained
wR(F2) = 0.081 w = 1/[σ2(Fo2) + (0.0457P)2 + 1.1603P] where P = (Fo2 + 2Fc2)/3
S = 1.06 (Δ/σ)max = 0.001
3433 reflections Δρmax = 0.12 e Å3
253 parameters Δρmin = −0.14 e Å3
1 restraint Absolute structure: Flack (1983), 1629 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: 0.0 (13)

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N4 0.15231 (6) 0.04557 (6) 0.26423 (9) 0.0422 (3)
H4 0.1345 0.0224 0.3045 0.051*
O1 0.15580 (7) 0.17926 (6) 0.40232 (9) 0.0690 (4)
H1 0.1466 0.2049 0.4418 0.104*
N1 0.14620 (7) 0.08057 (7) −0.13144 (9) 0.0534 (4)
C14 0.19348 (7) 0.14069 (7) 0.44439 (12) 0.0468 (4)
N2 0.08332 (6) −0.01202 (7) −0.06297 (11) 0.0569 (4)
C4 0.11269 (7) 0.02173 (7) 0.00293 (11) 0.0442 (4)
C12 0.19309 (6) 0.08738 (6) 0.28685 (10) 0.0389 (3)
N3 0.21230 (5) 0.11616 (5) 0.20892 (9) 0.0398 (3)
C11 0.18392 (7) 0.10501 (6) 0.02914 (10) 0.0386 (3)
C3 0.14849 (6) 0.07058 (7) −0.03403 (10) 0.0421 (3)
C18 0.25212 (6) 0.05078 (7) 0.42951 (11) 0.0437 (3)
C13 0.21381 (7) 0.09461 (7) 0.38867 (11) 0.0410 (3)
C20 0.31013 (8) −0.03905 (8) 0.41619 (17) 0.0641 (5)
H20 0.3238 −0.0707 0.3791 0.077*
C9 0.14476 (6) 0.04705 (6) 0.16521 (10) 0.0390 (3)
C1 0.21610 (9) 0.15939 (8) −0.11023 (13) 0.0585 (5)
H1A 0.2389 0.1889 −0.1391 0.070*
C19 0.27385 (7) 0.00224 (8) 0.37510 (13) 0.0516 (4)
H19 0.2632 −0.0016 0.3099 0.062*
C21 0.30698 (8) 0.01212 (10) 0.56875 (15) 0.0677 (6)
H21 0.3185 0.0151 0.6337 0.081*
C15 0.21017 (8) 0.14513 (9) 0.54344 (13) 0.0576 (4)
H15 0.1961 0.1762 0.5815 0.069*
C8 0.10968 (7) 0.01000 (7) 0.10380 (11) 0.0422 (3)
C10 0.18153 (6) 0.09101 (6) 0.13142 (10) 0.0373 (3)
C7 0.07478 (8) −0.03699 (8) 0.13643 (14) 0.0582 (4)
H7 0.0721 −0.0458 0.2025 0.070*
C17 0.26900 (7) 0.05588 (8) 0.52860 (13) 0.0516 (4)
C2 0.17893 (9) 0.12442 (9) −0.16609 (13) 0.0613 (5)
H2 0.1768 0.1323 −0.2325 0.074*
C16 0.24695 (8) 0.10373 (10) 0.58300 (13) 0.0601 (5)
H16 0.2578 0.1073 0.6481 0.072*
C5 0.05054 (10) −0.05570 (10) −0.02947 (17) 0.0720 (6)
H5 0.0300 −0.0787 −0.0744 0.086*
C6 0.04461 (9) −0.06976 (9) 0.06877 (17) 0.0729 (6)
H6 0.0205 −0.1010 0.0882 0.087*
C23 0.21879 (8) 0.14991 (7) −0.01156 (12) 0.0473 (4)
H23 0.2433 0.1729 0.0276 0.057*
C22 0.32682 (9) −0.03397 (10) 0.51413 (19) 0.0726 (6)
H22 0.3516 −0.0623 0.5419 0.087*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N4 0.0482 (7) 0.0475 (7) 0.0308 (6) −0.0029 (6) 0.0025 (5) 0.0074 (5)
O1 0.0956 (10) 0.0655 (8) 0.0461 (7) 0.0325 (7) −0.0183 (7) −0.0127 (6)
N1 0.0634 (9) 0.0683 (9) 0.0286 (6) 0.0102 (7) 0.0019 (6) −0.0026 (6)
C14 0.0506 (8) 0.0539 (9) 0.0358 (8) 0.0075 (7) −0.0057 (7) 0.0015 (7)
N2 0.0590 (8) 0.0651 (9) 0.0467 (8) −0.0034 (7) 0.0024 (7) −0.0196 (7)
C4 0.0427 (8) 0.0511 (9) 0.0387 (8) 0.0058 (7) 0.0031 (6) −0.0095 (7)
C12 0.0418 (7) 0.0431 (7) 0.0318 (7) 0.0050 (6) −0.0003 (6) 0.0024 (6)
N3 0.0430 (6) 0.0443 (6) 0.0321 (6) 0.0014 (5) 0.0008 (5) 0.0029 (5)
C11 0.0424 (7) 0.0433 (8) 0.0303 (7) 0.0072 (6) 0.0043 (6) 0.0024 (6)
C3 0.0438 (8) 0.0503 (8) 0.0321 (8) 0.0092 (6) 0.0043 (6) −0.0041 (6)
C18 0.0381 (7) 0.0521 (8) 0.0409 (8) −0.0018 (6) −0.0005 (6) 0.0117 (7)
C13 0.0442 (8) 0.0489 (8) 0.0299 (7) 0.0002 (6) −0.0014 (6) 0.0058 (6)
C20 0.0497 (9) 0.0542 (10) 0.0883 (15) 0.0043 (7) 0.0029 (10) 0.0120 (10)
C9 0.0421 (7) 0.0444 (8) 0.0304 (7) 0.0022 (6) 0.0033 (6) 0.0036 (6)
C1 0.0691 (11) 0.0645 (11) 0.0417 (9) 0.0023 (8) 0.0123 (8) 0.0152 (8)
C19 0.0458 (8) 0.0523 (9) 0.0566 (10) 0.0011 (7) 0.0016 (7) 0.0069 (8)
C21 0.0561 (10) 0.0880 (15) 0.0590 (11) −0.0003 (10) −0.0157 (9) 0.0290 (10)
C15 0.0649 (10) 0.0704 (11) 0.0375 (9) 0.0043 (8) −0.0026 (8) −0.0084 (8)
C8 0.0417 (8) 0.0443 (8) 0.0405 (8) 0.0017 (6) 0.0039 (6) −0.0036 (6)
C10 0.0398 (7) 0.0424 (8) 0.0297 (7) 0.0029 (6) 0.0016 (6) 0.0008 (6)
C7 0.0633 (11) 0.0557 (10) 0.0557 (11) −0.0100 (8) 0.0084 (8) 0.0002 (8)
C17 0.0441 (8) 0.0673 (10) 0.0433 (9) −0.0035 (7) −0.0061 (7) 0.0154 (8)
C2 0.0767 (12) 0.0770 (12) 0.0302 (8) 0.0113 (10) 0.0063 (8) 0.0087 (8)
C16 0.0627 (10) 0.0864 (13) 0.0314 (7) −0.0018 (10) −0.0115 (8) 0.0070 (8)
C5 0.0764 (13) 0.0718 (12) 0.0679 (13) −0.0183 (10) 0.0033 (11) −0.0268 (11)
C6 0.0809 (13) 0.0620 (12) 0.0756 (15) −0.0267 (10) 0.0108 (11) −0.0115 (10)
C23 0.0529 (9) 0.0505 (9) 0.0387 (8) 0.0023 (7) 0.0061 (7) 0.0043 (7)
C22 0.0569 (11) 0.0678 (13) 0.0932 (16) 0.0089 (9) −0.0099 (11) 0.0312 (12)

Geometric parameters (Å, °)

N4—C12 1.3548 (19) C20—H20 0.9300
N4—C9 1.3697 (19) C9—C10 1.375 (2)
N4—H4 0.8600 C9—C8 1.427 (2)
O1—C14 1.3476 (18) C1—C23 1.372 (2)
O1—H1 0.8200 C1—C2 1.384 (3)
N1—C2 1.324 (2) C1—H1A 0.9300
N1—C3 1.3563 (19) C19—H19 0.9300
C14—C13 1.370 (2) C21—C22 1.358 (3)
C14—C15 1.414 (2) C21—C17 1.420 (2)
N2—C5 1.316 (3) C21—H21 0.9300
N2—C4 1.356 (2) C15—C16 1.363 (3)
C4—C8 1.411 (2) C15—H15 0.9300
C4—C3 1.459 (2) C8—C7 1.395 (2)
C12—N3 1.3241 (18) C7—C6 1.369 (3)
C12—C13 1.482 (2) C7—H7 0.9300
N3—C10 1.3912 (19) C17—C16 1.404 (3)
C11—C23 1.400 (2) C2—H2 0.9300
C11—C3 1.413 (2) C16—H16 0.9300
C11—C10 1.4394 (19) C5—C6 1.391 (3)
C18—C19 1.414 (2) C5—H5 0.9300
C18—C17 1.417 (2) C6—H6 0.9300
C18—C13 1.429 (2) C23—H23 0.9300
C20—C19 1.363 (3) C22—H22 0.9300
C20—C22 1.400 (3)
C12—N4—C9 107.15 (12) C20—C19—H19 119.3
C12—N4—H4 126.4 C18—C19—H19 119.3
C9—N4—H4 126.4 C22—C21—C17 121.23 (19)
C14—O1—H1 109.5 C22—C21—H21 119.4
C2—N1—C3 117.19 (16) C17—C21—H21 119.4
O1—C14—C13 117.60 (14) C16—C15—C14 119.76 (17)
O1—C14—C15 122.28 (14) C16—C15—H15 120.1
C13—C14—C15 120.07 (14) C14—C15—H15 120.1
C5—N2—C4 117.62 (16) C7—C8—C4 118.98 (16)
N2—C4—C8 121.68 (15) C7—C8—C9 124.73 (15)
N2—C4—C3 117.67 (14) C4—C8—C9 116.26 (14)
C8—C4—C3 120.64 (14) C9—C10—N3 109.79 (12)
N3—C12—N4 112.31 (13) C9—C10—C11 120.66 (13)
N3—C12—C13 127.13 (13) N3—C10—C11 129.55 (13)
N4—C12—C13 120.47 (13) C6—C7—C8 118.34 (18)
C12—N3—C10 104.67 (11) C6—C7—H7 120.8
C23—C11—C3 118.18 (14) C8—C7—H7 120.8
C23—C11—C10 124.68 (14) C16—C17—C18 118.50 (15)
C3—C11—C10 117.14 (13) C16—C17—C21 122.93 (18)
N1—C3—C11 122.32 (15) C18—C17—C21 118.57 (18)
N1—C3—C4 116.56 (14) N1—C2—C1 124.50 (16)
C11—C3—C4 121.11 (13) N1—C2—H2 117.8
C19—C18—C17 118.45 (15) C1—C2—H2 117.8
C19—C18—C13 122.67 (14) C15—C16—C17 122.14 (16)
C17—C18—C13 118.88 (15) C15—C16—H16 118.9
C14—C13—C18 120.65 (14) C17—C16—H16 118.9
C14—C13—C12 120.25 (13) N2—C5—C6 124.30 (18)
C18—C13—C12 118.97 (14) N2—C5—H5 117.9
C19—C20—C22 120.18 (19) C6—C5—H5 117.9
C19—C20—H20 119.9 C7—C6—C5 119.06 (18)
C22—C20—H20 119.9 C7—C6—H6 120.5
N4—C9—C10 106.07 (13) C5—C6—H6 120.5
N4—C9—C8 129.82 (13) C1—C23—C11 118.80 (17)
C10—C9—C8 124.02 (13) C1—C23—H23 120.6
C23—C1—C2 118.97 (17) C11—C23—H23 120.6
C23—C1—H1A 120.5 C21—C22—C20 120.22 (17)
C2—C1—H1A 120.5 C21—C22—H22 119.9
C20—C19—C18 121.35 (17) C20—C22—H22 119.9

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
N4—H4···N2i 0.86 2.17 2.9361 (19) 149
N4—H4···N1i 0.86 2.50 3.191 (2) 138
O1—H1···N3ii 0.82 2.01 2.7203 (17) 145

Symmetry codes: (i) x, −y, z+1/2; (ii) y, −x+1/2, z+1/4.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: LH5209).

References

  1. Bruker (1997). SMART Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (1999). SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Flack, H. D. (1983). Acta Cryst. A39, 876–881.
  4. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  5. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  6. Steck, E. A. & Day, A. R. (1943). J. Am. Chem. Soc. 65, 452–456.
  7. Wang, X. Y., Ma, X. Y., Liu, Y., Xu, Z. L. & Kong, Z. G. (2010). Chin. J. Inorg. Chem. 26, 1482–1484.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811005861/lh5209sup1.cif

e-67-0o725-sup1.cif (19KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005861/lh5209Isup2.hkl

e-67-0o725-Isup2.hkl (165.2KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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