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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Feb 19;67(Pt 3):m345. doi: 10.1107/S1600536811005769

Bis(cyanato-κN)bis­(5,7-dimethyl-1,2,4-triazolo[1,5-a]pyrimidine-κN 3)zinc

Ana B Caballero a,*, Miguel Quirós a, Antonio Rodríguez-Diéguez a, Juan M Salas a
PMCID: PMC3052141  PMID: 21522274

Abstract

In the title complex, [Zn(NCO)2(C7H8N4)2], the ZnII ion exhibits a distorted tetra­hedral coordination geometry. The coordination environment is formed by two 5,7-dimethyl-1,2,4-triazolo[1,5-a]pyrimidine (dmtp) ligands, coordinated through the N atom in position 3, and two cyanate anions inter­acting by their N atoms. Supra­molecular dimers are generated by stacking inter­actions between the pyrimidine rings of two ligands related by an inversion center [centroid–centroid distance = 3.5444 (18) Å].

Related literature

For similar structures, see: Adriaanse et al. (2009 ▶); Salas et al. (1999 ▶); Caballero et al. (2010 ▶). For a description of the geometry of tetra­hedrally coordinated metal atoms, see: Yang et al. (2007 ▶).graphic file with name e-67-0m345-scheme1.jpg

Experimental

Crystal data

  • [Zn(NCO)2(C7H8N4)2]

  • M r = 445.76

  • Triclinic, Inline graphic

  • a = 10.0023 (15) Å

  • b = 10.8168 (16) Å

  • c = 11.1094 (16) Å

  • α = 116.772 (2)°

  • β = 107.226 (2)°

  • γ = 98.557 (2)°

  • V = 967.2 (2) Å3

  • Z = 2

  • Mo Kα radiation

  • μ = 1.31 mm−1

  • T = 293 K

  • 0.25 × 0.14 × 0.10 mm

Data collection

  • Bruker SMART APEX CCD system diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.773, T max = 0.881

  • 11387 measured reflections

  • 4403 independent reflections

  • 3580 reflections with I > 2σ(I)

  • R int = 0.025

Refinement

  • R[F 2 > 2σ(F 2)] = 0.039

  • wR(F 2) = 0.106

  • S = 1.01

  • 4403 reflections

  • 266 parameters

  • H-atom parameters constrained

  • Δρmax = 0.37 e Å−3

  • Δρmin = −0.22 e Å−3

Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Xtal_GX (Hall et al., 1999 ▶); software used to prepare material for publication: SHELXL97.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811005769/su2253sup1.cif

e-67-0m345-sup1.cif (18.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005769/su2253Isup2.hkl

e-67-0m345-Isup2.hkl (215.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Acknowledgments

Financial support from the Junta de Andalucia (FQM-3705 and FQM-4228) and the Spanish Ministry of Education (FPU fellowship of Ana B. Caballero) is gratefully acknowledged.

supplementary crystallographic information

Comment

The coordination chemistry of 1,2,4-triazolo[1,5-a]pyrimidine derivatives displays great versatility, binding metal ions in several different ways, either in a monodentate (usually through the N atom in position 3) or in a bidentate fashion, bridging metal atoms and leading to dinuclear or polynuclear species with interesting metal-metal interactions (Salas et al., 1999). Some zinc(II) complexes containing these derivatives together with secondary bridging ligands have been described, for example with the thiocyanate anion (Salas et al., 1999; Adriaanse et al., 2009). In most of these metal complexes, both ligands display monodentate binding leading to mononuclear species with either octahedral or tetrahedral coordination geometries.

The title compound continues our studies on a series of triazolopyrimidine and pseudohalide-based metal complexes (Caballero et al., 2010). This zinc(II) complex, together with the analogous complex with the unsubstituted triazolopyrimidine ligand (Caballero et al., 2010), are the only ones that have been obtained with the cyanate anion.

The title compound exhibits a distorted tetrahedral coordination geometry (τ4 = 0.924, Yang et al., 2007) made of two dmtp ligands (dmtp = 5,7-dimethyl-1,2,4-triazolo[1,5-a]pyrimidine) interacting through their more usual coordination position, N3, and two cyanate anions bound through their N atom (Fig. 1). The Zn—N3 bond distances, 2.022 (2) and 2.043 (2) Å, are in the typical range for triazolopyrimidine ligands.

In the crystal the stacking interactions between the pyrimidine ring of two triazolopyrimidine aromatic systems leads to the formation of supramolecular centrosymmetric dimers (Fig. 2); the centroid-to-centroid distance, involving ring (N4A,C3A,N8A,C7A,C6A,C5A) and that related by an inversion center [symmetry code: 1-x, -y, -z], is 3.5444 (18) Å.

Experimental

A 10 ml volume of an aqueous solution containing 1 mmol of NaNCO (0.068 g) was slowly added to a 10 ml aqueous solution containing 0.5 mmol of Zn(NO)3.4H2O (0.131 g) and 1 mmol of dmtp ligand (0.148 g). Immediately after adding NaNCO, a yellow turbidity gradually appeared. The mixture was stirred at 353 K for 15 min. and the precipitate was then filtered off. The resulting clear yellow solution was left to stand for a week at room temperature and yellow crystals of the title compound were collected and used for X-ray diffraction studies.

Refinement

The pyrimidine H atoms were positioned geometrically and treated as riding with C—H = 0.93 Å (methine) and 0.96 Å (methyl), and with Uiso(H) = 1.2Ueq(C).

Figures

Fig. 1.

Fig. 1.

A view of the molecular structure of the title molecule with displacement ellipsoids drawn at the 50% probability level. H atoms are represented as spheres of arbitrary radii.

Fig. 2.

Fig. 2.

A view along c axis of the crystal packing of the title compound, showing the formation of the dimers by π···π interactions (dashed lines) involing pyrimidine ring (N4A, C3A, N8A, C7A, C6A, C5A) and that related by an inversion center.

Crystal data

[Zn(NCO)2(C7H8N4)2] Z = 2
Mr = 445.76 F(000) = 456
Triclinic, P1 Dx = 1.531 Mg m−3
Hall symbol: -P 1 Mo Kα radiation, λ = 0.71069 Å
a = 10.0023 (15) Å Cell parameters from 3345 reflections
b = 10.8168 (16) Å θ = 2.2–23.4°
c = 11.1094 (16) Å µ = 1.31 mm−1
α = 116.772 (2)° T = 293 K
β = 107.226 (2)° Prismatic, colourless
γ = 98.557 (2)° 0.25 × 0.14 × 0.10 mm
V = 967.2 (2) Å3

Data collection

Bruker SMART APEX CCD system diffractometer 4403 independent reflections
Radiation source: fine-focus sealed tube 3580 reflections with I > 2σ(I)
graphite Rint = 0.025
Detector resolution: 8.26 pixels mm-1 θmax = 28.4°, θmin = 2.2°
φ and ω scans h = −13→12
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) k = −13→14
Tmin = 0.773, Tmax = 0.881 l = −14→14
11387 measured reflections

Refinement

Refinement on F2 Primary atom site location: heavy-atom method
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106 H-atom parameters constrained
S = 1.01 w = 1/[σ2(Fo2) + (0.060P)2 + 0.060P] where P = (Fo2 + 2Fc2)/3
4403 reflections (Δ/σ)max = 0.001
266 parameters Δρmax = 0.37 e Å−3
0 restraints Δρmin = −0.22 e Å−3

Special details

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Zn 0.36171 (3) 0.27490 (3) 0.25442 (3) 0.04810 (12)
N1A 0.7252 (2) 0.5596 (2) 0.2847 (2) 0.0566 (5)
C2A 0.6371 (3) 0.5067 (3) 0.3287 (3) 0.0552 (6)
H2A 0.6552 0.5497 0.4282 0.066*
N3A 0.5182 (2) 0.3860 (2) 0.2224 (2) 0.0477 (4)
C3AA 0.5321 (2) 0.3589 (2) 0.0970 (2) 0.0429 (5)
N4A 0.4440 (2) 0.2520 (2) −0.0413 (2) 0.0485 (5)
C5A 0.4853 (3) 0.2523 (3) −0.1441 (3) 0.0528 (6)
C51A 0.3895 (4) 0.1323 (3) −0.3011 (3) 0.0776 (9)
H51A 0.4437 0.0690 −0.3384 0.093*
H52A 0.3611 0.1745 −0.3605 0.093*
H53A 0.3022 0.0766 −0.3053 0.093*
C6A 0.6140 (3) 0.3580 (3) −0.1100 (3) 0.0578 (6)
H6A 0.6388 0.3529 −0.1861 0.069*
C7A 0.7020 (3) 0.4665 (3) 0.0310 (3) 0.0514 (6)
C71A 0.8386 (3) 0.5868 (3) 0.0821 (4) 0.0715 (8)
H71A 0.8597 0.5736 −0.0010 0.086*
H72A 0.9207 0.5851 0.1522 0.086*
H73A 0.8231 0.6795 0.1281 0.086*
N8A 0.6577 (2) 0.4640 (2) 0.1343 (2) 0.0455 (4)
N1B 0.2927 (2) −0.1274 (2) −0.1076 (3) 0.0627 (6)
C2B 0.3459 (3) −0.0230 (3) 0.0314 (3) 0.0560 (6)
H2B 0.4302 −0.0160 0.1018 0.067*
N3B 0.2735 (2) 0.0740 (2) 0.0676 (2) 0.0463 (4)
C3AB 0.1626 (2) 0.0281 (2) −0.0619 (2) 0.0436 (5)
N4B 0.0575 (2) 0.0863 (2) −0.0882 (2) 0.0522 (5)
C5B −0.0380 (3) 0.0186 (3) −0.2292 (3) 0.0580 (6)
C51B −0.1560 (3) 0.0829 (4) −0.2625 (4) 0.0837 (10)
H51B −0.1447 0.1672 −0.1727 0.100*
H52B −0.2519 0.0113 −0.3059 0.100*
H53B −0.1470 0.1118 −0.3305 0.100*
C6B −0.0299 (3) −0.1076 (3) −0.3424 (3) 0.0645 (7)
H6B −0.0992 −0.1512 −0.4393 0.077*
C7B 0.0770 (3) −0.1662 (3) −0.3123 (3) 0.0598 (7)
C71B 0.0991 (4) −0.2982 (3) −0.4201 (3) 0.0881 (10)
H71B 0.1921 −0.2690 −0.4245 0.106*
H72B 0.0200 −0.3420 −0.5161 0.106*
H73B 0.0995 −0.3682 −0.3894 0.106*
N8B 0.1732 (2) −0.0941 (2) −0.1680 (2) 0.0484 (4)
N1C 0.2232 (3) 0.3742 (3) 0.2904 (3) 0.0697 (6)
C1C 0.1135 (4) 0.3882 (3) 0.2404 (4) 0.0699 (8)
O1C −0.0024 (3) 0.4026 (4) 0.1929 (4) 0.1284 (11)
N1D 0.4708 (3) 0.2496 (3) 0.4110 (3) 0.0750 (7)
C1D 0.5648 (3) 0.2391 (3) 0.4912 (3) 0.0589 (6)
O1D 0.6598 (3) 0.2288 (3) 0.5767 (3) 0.0985 (8)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Zn 0.05173 (19) 0.05143 (19) 0.03623 (16) 0.01493 (13) 0.01566 (13) 0.02134 (13)
N1A 0.0559 (12) 0.0492 (12) 0.0424 (11) 0.0070 (9) 0.0145 (10) 0.0137 (9)
C2A 0.0582 (15) 0.0539 (14) 0.0382 (12) 0.0137 (12) 0.0182 (11) 0.0150 (11)
N3A 0.0519 (11) 0.0467 (11) 0.0359 (10) 0.0134 (9) 0.0181 (9) 0.0159 (9)
C3AA 0.0468 (12) 0.0404 (11) 0.0395 (11) 0.0166 (10) 0.0168 (10) 0.0195 (10)
N4A 0.0568 (12) 0.0427 (10) 0.0376 (10) 0.0131 (9) 0.0154 (9) 0.0182 (9)
C5A 0.0708 (16) 0.0491 (14) 0.0399 (13) 0.0256 (12) 0.0209 (12) 0.0238 (11)
C51A 0.102 (2) 0.0684 (19) 0.0408 (15) 0.0189 (17) 0.0195 (15) 0.0212 (14)
C6A 0.0741 (17) 0.0644 (16) 0.0534 (15) 0.0314 (14) 0.0354 (14) 0.0368 (14)
C7A 0.0539 (14) 0.0562 (14) 0.0579 (15) 0.0245 (12) 0.0265 (12) 0.0362 (13)
C71A 0.0649 (18) 0.0762 (19) 0.083 (2) 0.0181 (15) 0.0344 (16) 0.0484 (18)
N8A 0.0488 (11) 0.0420 (10) 0.0424 (10) 0.0163 (9) 0.0177 (9) 0.0198 (9)
N1B 0.0521 (12) 0.0550 (13) 0.0588 (14) 0.0194 (10) 0.0156 (11) 0.0169 (11)
C2B 0.0480 (13) 0.0550 (15) 0.0550 (15) 0.0175 (11) 0.0122 (12) 0.0266 (13)
N3B 0.0467 (10) 0.0454 (10) 0.0398 (10) 0.0134 (8) 0.0117 (8) 0.0213 (9)
C3AB 0.0428 (12) 0.0406 (12) 0.0401 (12) 0.0076 (9) 0.0123 (9) 0.0204 (10)
N4B 0.0487 (11) 0.0485 (11) 0.0544 (12) 0.0142 (9) 0.0135 (10) 0.0285 (10)
C5B 0.0471 (14) 0.0557 (15) 0.0606 (16) 0.0056 (11) 0.0058 (12) 0.0359 (14)
C51B 0.0582 (18) 0.083 (2) 0.090 (2) 0.0150 (16) −0.0003 (16) 0.0516 (19)
C6B 0.0555 (16) 0.0666 (17) 0.0458 (14) −0.0007 (13) 0.0016 (12) 0.0281 (13)
C7B 0.0543 (15) 0.0522 (14) 0.0448 (14) −0.0028 (12) 0.0137 (12) 0.0143 (12)
C71B 0.081 (2) 0.074 (2) 0.0547 (18) 0.0086 (17) 0.0222 (16) 0.0010 (15)
N8B 0.0459 (11) 0.0431 (10) 0.0429 (11) 0.0093 (8) 0.0131 (9) 0.0173 (9)
N1C 0.0721 (16) 0.0717 (15) 0.0620 (15) 0.0335 (13) 0.0318 (13) 0.0272 (13)
C1C 0.077 (2) 0.0734 (19) 0.073 (2) 0.0326 (17) 0.0411 (18) 0.0403 (17)
O1C 0.100 (2) 0.172 (3) 0.157 (3) 0.085 (2) 0.059 (2) 0.103 (3)
N1D 0.0783 (17) 0.0876 (18) 0.0526 (14) 0.0202 (14) 0.0111 (13) 0.0437 (14)
C1D 0.0783 (19) 0.0609 (16) 0.0416 (13) 0.0249 (14) 0.0291 (14) 0.0266 (12)
O1D 0.115 (2) 0.136 (2) 0.0756 (15) 0.0763 (18) 0.0359 (14) 0.0712 (16)

Geometric parameters (Å, °)

Zn—N1C 1.902 (2) N1B—C2B 1.306 (3)
Zn—N1D 1.919 (2) N1B—N8B 1.370 (3)
Zn—N3B 2.0223 (19) C2B—N3B 1.344 (3)
Zn—N3A 2.0430 (19) C2B—H2B 0.9300
N1A—C2A 1.304 (3) N3B—C3AB 1.339 (3)
N1A—N8A 1.372 (3) C3AB—N4B 1.329 (3)
C2A—N3A 1.353 (3) C3AB—N8B 1.365 (3)
C2A—H2A 0.9300 N4B—C5B 1.332 (3)
N3A—C3AA 1.344 (3) C5B—C6B 1.414 (4)
C3AA—N4A 1.330 (3) C5B—C51B 1.494 (4)
C3AA—N8A 1.373 (3) C51B—H51B 0.9600
N4A—C5A 1.326 (3) C51B—H52B 0.9600
C5A—C6A 1.411 (4) C51B—H53B 0.9601
C5A—C51A 1.498 (4) C6B—C7B 1.356 (4)
C51A—H51A 0.9603 C6B—H6B 0.9300
C51A—H52A 0.9604 C7B—N8B 1.357 (3)
C51A—H53A 0.9604 C7B—C71B 1.494 (4)
C6A—C7A 1.351 (4) C71B—H71B 0.9602
C6A—H6A 0.9300 C71B—H72B 0.9602
C7A—N8A 1.357 (3) C71B—H73B 0.9602
C7A—C71A 1.493 (4) N1C—C1C 1.140 (4)
C71A—H71A 0.9601 C1C—O1C 1.188 (4)
C71A—H72A 0.9601 N1D—C1D 1.148 (3)
C71A—H73A 0.9601 C1D—O1D 1.188 (3)
N1C—Zn—N1D 115.09 (11) N1A—N8A—C3AA 110.40 (18)
N1C—Zn—N3B 114.59 (9) C2B—N1B—N8B 101.30 (19)
N1D—Zn—N3B 106.30 (9) N1B—C2B—N3B 116.8 (2)
N1C—Zn—N3A 111.07 (9) N1B—C2B—H2B 121.5
N1D—Zn—N3A 105.50 (10) N3B—C2B—H2B 121.6
N3B—Zn—N3A 103.25 (8) C3AB—N3B—C2B 103.40 (19)
C2A—N1A—N8A 101.70 (19) C3AB—N3B—Zn 128.57 (15)
N1A—C2A—N3A 116.7 (2) C2B—N3B—Zn 124.47 (16)
N1A—C2A—H2A 121.6 N4B—C3AB—N3B 128.1 (2)
N3A—C2A—H2A 121.6 N4B—C3AB—N8B 124.0 (2)
C3AA—N3A—C2A 103.34 (19) N3B—C3AB—N8B 107.9 (2)
C3AA—N3A—Zn 130.18 (16) C3AB—N4B—C5B 115.2 (2)
C2A—N3A—Zn 126.47 (16) N4B—C5B—C6B 122.5 (2)
N4A—C3AA—N3A 128.6 (2) N4B—C5B—C51B 116.4 (3)
N4A—C3AA—N8A 123.6 (2) C6B—C5B—C51B 121.1 (3)
N3A—C3AA—N8A 107.82 (19) C5B—C51B—H51B 109.6
C5A—N4A—C3AA 115.4 (2) C5B—C51B—H52B 109.7
N4A—C5A—C6A 122.6 (2) H51B—C51B—H52B 109.5
N4A—C5A—C51A 116.8 (2) C5B—C51B—H53B 109.2
C6A—C5A—C51A 120.5 (2) H51B—C51B—H53B 109.5
C5A—C51A—H51A 109.6 H52B—C51B—H53B 109.5
C5A—C51A—H52A 109.5 C7B—C6B—C5B 121.2 (2)
H51A—C51A—H52A 109.4 C7B—C6B—H6B 119.4
C5A—C51A—H53A 109.5 C5B—C6B—H6B 119.4
H51A—C51A—H53A 109.4 C6B—C7B—N8B 114.9 (2)
H52A—C51A—H53A 109.4 C6B—C7B—C71B 127.0 (3)
C7A—C6A—C5A 121.3 (2) N8B—C7B—C71B 118.1 (3)
C7A—C6A—H6A 119.3 C7B—C71B—H71B 109.2
C5A—C6A—H6A 119.3 C7B—C71B—H72B 109.3
C6A—C7A—N8A 115.0 (2) H71B—C71B—H72B 109.5
C6A—C7A—C71A 126.8 (2) C7B—C71B—H73B 109.9
N8A—C7A—C71A 118.1 (2) H71B—C71B—H73B 109.5
C7A—C71A—H71A 109.7 H72B—C71B—H73B 109.4
C7A—C71A—H72A 109.5 C7B—N8B—C3AB 122.2 (2)
H71A—C71A—H72A 109.5 C7B—N8B—N1B 127.2 (2)
C7A—C71A—H73A 109.3 C3AB—N8B—N1B 110.57 (19)
H71A—C71A—H73A 109.5 C1C—N1C—Zn 146.6 (2)
H72A—C71A—H73A 109.5 N1C—C1C—O1C 177.2 (4)
C7A—N8A—N1A 127.6 (2) C1D—N1D—Zn 161.5 (3)
C7A—N8A—C3AA 122.0 (2) N1D—C1D—O1D 178.1 (3)

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SU2253).

References

  1. Adriaanse, J. H., Askes, S. H. C., van Bree, I., van Oudheusden, S., van den Bos, E. D., Gunay, E., Mutikainen, I., Turpeinen, U., van Albada, G. A., Haasnoot, J. G. & Reedijk, J. (2009). Polyhedron, 28, 3143–3149.
  2. Bruker (2007). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Caballero, A. B., Rodríguez-Diéguez, A., Barea, E., Quirós, M. & Salas, J. M. (2010). CrystEngComm, 12, 3038–3045.
  4. Hall, S. R., du Boulay, D. J. & Olthof-Hazekamp, R. (1999). Editors. Xtal Reference Manual University of Western Australia: Lamb, Perth.
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  6. Sheldrick, G. M. (1996). SADABS University of Göttingen, Germany.
  7. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811005769/su2253sup1.cif

e-67-0m345-sup1.cif (18.7KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005769/su2253Isup2.hkl

e-67-0m345-Isup2.hkl (215.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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