Abstract
In the title compound, [CuCl2(C13H19N3O)]·H2O, the tridentate Schiff base ligand and the two Cl atoms complete a distorted square-pyramidal coordination geometry around the CuII ion in which the three N atoms and one Cl atom are located in the basal plane and the other Cl atom is at the apical position. In the crystal, O—H⋯Cl hydrogen bonds link the complex molecules and the uncoordinated water molecules into infinite chains along the a axis. The chains are further connected into a three-dimensional network via C—H⋯O and C—H⋯Cl interactions.
Related literature
For the structures of CuCl2 complexes with similar ligands, see: Saleh Salga et al. (2010 ▶); Wang et al. (2009 ▶). For the structure of a CdCl2 complex with the same Schiff base ligand, see: Ikmal Hisham et al. (2010 ▶). For a description of the geometry of complexes with a five-coordinate metal atom, see: Addison et al. (1984 ▶).
Experimental
Crystal data
[CuCl2(C13H19N3O)]·H2O
M r = 385.77
Monoclinic,
a = 7.9194 (8) Å
b = 8.5793 (8) Å
c = 22.925 (2) Å
β = 91.981 (1)°
V = 1556.6 (3) Å3
Z = 4
Mo Kα radiation
μ = 1.75 mm−1
T = 100 K
0.18 × 0.16 × 0.09 mm
Data collection
Bruker APEXII CCD diffractometer
Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.743, T max = 0.858
9634 measured reflections
3348 independent reflections
2948 reflections with I > 2σ(I)
R int = 0.023
Refinement
R[F 2 > 2σ(F 2)] = 0.025
wR(F 2) = 0.060
S = 1.05
3348 reflections
197 parameters
2 restraints
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.37 e Å−3
Δρmin = −0.34 e Å−3
Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001) ▶; software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶).
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811004892/is2674sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004892/is2674Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O2—H2A⋯Cl2i | 0.84 (2) | 2.35 (2) | 3.1829 (16) | 173 (2) |
| O2—H2B⋯Cl1 | 0.83 (2) | 2.48 (2) | 3.2841 (18) | 164 (2) |
| C2—H2⋯O2ii | 0.95 | 2.41 | 3.307 (2) | 156 |
| C3—H3⋯Cl2iii | 0.95 | 2.82 | 3.619 (2) | 142 |
| C4—H4⋯O2iv | 0.95 | 2.50 | 3.445 (2) | 172 |
| C7—H7A⋯Cl1v | 0.98 | 2.68 | 3.6179 (19) | 161 |
| C8—H8A⋯O1vi | 0.99 | 2.47 | 3.336 (2) | 146 |
| C10—H10B⋯Cl1 | 0.99 | 2.79 | 3.4496 (19) | 124 |
| C10—H10A⋯Cl2 | 0.99 | 2.71 | 3.3566 (19) | 123 |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
; (v)
; (vi)
.
Acknowledgments
The authors thank University of Malaya for funding this study (FRGS grant No. FP004/2010B).
supplementary crystallographic information
Comment
The asymmetric unit of the title compound consists of a copper(II) complex and one molecule of water. Like the CdCl2 complex of the Schiff base, 2-morpholino-N-[1-(2-pyridyl)ethylidene]ethanamine, (Ikmal Hisham et al., 2010) the metal ion in the present structure is five-coordinated by the N,N',N"-tridentate Schiff base ligand and two Cl atoms in a distorted square-pyramidal geometry, the τ value (Addison et al.,1984) being 0.15. The Cu—Cl and Cu—N interatomic distances are comparable to the values reported in the literature (Saleh Salga et al., 2010; Wang et al., 2009). In the crystal, the adjacent metal complexes and water molecules are linked into a three-dimensional network via O—H···Cl, C—H···Cl and C—H···O interactions. In addition, intramolecular C—H···Cl hydrogen bonding is observed.
Experimental
A mixture of 2-acetylpyridine (0.20 g, 1.65 mmol) and 4-(2-aminoethyl)morpholine (0.21 g, 1.65 mmol) in ethanol (20 ml) was refluxed. After 2 hr a solution of copper(II) chloride dihydrate (0.28 g, 1.65 mmol) in a minimum amount of ethanol was added and the resulting solution was refluxed for 30 min, then set aside at room temperature. The crystals of the title complex were obtained after a few days.
Refinement
The C-bound hydrogen atoms were placed at calculated positions (C—H 0.95–0.99 Å) and were treated as riding on their parent atoms. The O-bound H atoms were placed in a difference Fourier map, and were refined with distance restraint of O—H 0.84 (2) Å. For all hydrogen atoms Uiso(H) were set to 1.2–1.5 times Ueq(carrier atom).
Figures
Fig. 1.
Displacement ellipsoid plot of the title compound at the 50% probability level. Hydrogen atoms are drawn as spheres of arbitrary radii.
Crystal data
| [CuCl2(C13H19N3O)]·H2O | F(000) = 796 |
| Mr = 385.77 | Dx = 1.646 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2yn | Cell parameters from 4229 reflections |
| a = 7.9194 (8) Å | θ = 2.5–28.2° |
| b = 8.5793 (8) Å | µ = 1.75 mm−1 |
| c = 22.925 (2) Å | T = 100 K |
| β = 91.981 (1)° | Block, green |
| V = 1556.6 (3) Å3 | 0.18 × 0.16 × 0.09 mm |
| Z = 4 |
Data collection
| Bruker APEXII CCD diffractometer | 3348 independent reflections |
| Radiation source: fine-focus sealed tube | 2948 reflections with I > 2σ(I) |
| graphite | Rint = 0.023 |
| φ and ω scans | θmax = 27.0°, θmin = 2.5° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −10→10 |
| Tmin = 0.743, Tmax = 0.858 | k = −10→10 |
| 9634 measured reflections | l = −29→28 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.025 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.060 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.05 | w = 1/[σ2(Fo2) + (0.0258P)2 + 0.893P] where P = (Fo2 + 2Fc2)/3 |
| 3348 reflections | (Δ/σ)max = 0.001 |
| 197 parameters | Δρmax = 0.37 e Å−3 |
| 2 restraints | Δρmin = −0.34 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| Cu1 | 0.60251 (3) | 0.86379 (2) | 0.122328 (9) | 0.01099 (7) | |
| Cl1 | 0.49087 (6) | 0.62132 (5) | 0.11931 (2) | 0.01873 (11) | |
| Cl2 | 0.90458 (6) | 0.85029 (5) | 0.15951 (2) | 0.01773 (11) | |
| O1 | 0.32231 (17) | 0.82636 (16) | 0.30317 (6) | 0.0183 (3) | |
| N1 | 0.68558 (19) | 0.86674 (17) | 0.03959 (7) | 0.0129 (3) | |
| N2 | 0.60269 (19) | 1.09006 (17) | 0.10733 (7) | 0.0119 (3) | |
| N3 | 0.51025 (18) | 0.92685 (17) | 0.20213 (6) | 0.0114 (3) | |
| C1 | 0.7350 (2) | 0.7448 (2) | 0.00826 (8) | 0.0159 (4) | |
| H1 | 0.7128 | 0.6427 | 0.0221 | 0.019* | |
| C2 | 0.8177 (2) | 0.7617 (2) | −0.04381 (8) | 0.0167 (4) | |
| H2 | 0.8513 | 0.6729 | −0.0653 | 0.020* | |
| C3 | 0.8501 (2) | 0.9106 (2) | −0.06373 (8) | 0.0156 (4) | |
| H3 | 0.9077 | 0.9254 | −0.0990 | 0.019* | |
| C4 | 0.7975 (2) | 1.0386 (2) | −0.03157 (8) | 0.0147 (4) | |
| H4 | 0.8168 | 1.1417 | −0.0449 | 0.018* | |
| C5 | 0.7169 (2) | 1.0126 (2) | 0.01989 (8) | 0.0121 (4) | |
| C6 | 0.6645 (2) | 1.1396 (2) | 0.05987 (8) | 0.0127 (4) | |
| C7 | 0.6910 (2) | 1.3055 (2) | 0.04320 (8) | 0.0172 (4) | |
| H7A | 0.6395 | 1.3737 | 0.0719 | 0.026* | |
| H7B | 0.6385 | 1.3247 | 0.0045 | 0.026* | |
| H7C | 0.8124 | 1.3271 | 0.0422 | 0.026* | |
| C8 | 0.5483 (2) | 1.1856 (2) | 0.15617 (8) | 0.0127 (4) | |
| H8A | 0.4272 | 1.2127 | 0.1510 | 0.015* | |
| H8B | 0.6148 | 1.2832 | 0.1587 | 0.015* | |
| C9 | 0.5779 (2) | 1.0881 (2) | 0.21117 (8) | 0.0132 (4) | |
| H9A | 0.7005 | 1.0830 | 0.2210 | 0.016* | |
| H9B | 0.5212 | 1.1379 | 0.2442 | 0.016* | |
| C10 | 0.5778 (2) | 0.8179 (2) | 0.24813 (8) | 0.0139 (4) | |
| H10A | 0.7017 | 0.8316 | 0.2522 | 0.017* | |
| H10B | 0.5557 | 0.7094 | 0.2353 | 0.017* | |
| C11 | 0.5017 (2) | 0.8419 (2) | 0.30720 (8) | 0.0174 (4) | |
| H11A | 0.5492 | 0.7642 | 0.3352 | 0.021* | |
| H11B | 0.5316 | 0.9471 | 0.3221 | 0.021* | |
| C12 | 0.2547 (2) | 0.9419 (2) | 0.26393 (8) | 0.0171 (4) | |
| H12A | 0.2853 | 1.0468 | 0.2789 | 0.021* | |
| H12B | 0.1299 | 0.9340 | 0.2620 | 0.021* | |
| C13 | 0.3217 (2) | 0.9220 (2) | 0.20293 (8) | 0.0130 (4) | |
| H13A | 0.2818 | 0.8210 | 0.1867 | 0.016* | |
| H13B | 0.2749 | 1.0057 | 0.1774 | 0.016* | |
| O2 | 0.0878 (2) | 0.59912 (18) | 0.08146 (7) | 0.0273 (3) | |
| H2A | 0.035 (3) | 0.659 (3) | 0.1032 (10) | 0.033* | |
| H2B | 0.183 (2) | 0.602 (3) | 0.0978 (11) | 0.033* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cu1 | 0.01348 (12) | 0.00927 (11) | 0.01044 (12) | 0.00023 (8) | 0.00364 (8) | 0.00007 (8) |
| Cl1 | 0.0256 (3) | 0.0112 (2) | 0.0200 (2) | −0.00334 (17) | 0.00966 (19) | −0.00245 (17) |
| Cl2 | 0.0123 (2) | 0.0245 (2) | 0.0165 (2) | 0.00191 (17) | 0.00273 (17) | 0.00437 (18) |
| O1 | 0.0157 (7) | 0.0231 (7) | 0.0165 (7) | −0.0002 (5) | 0.0050 (5) | 0.0047 (6) |
| N1 | 0.0131 (7) | 0.0133 (7) | 0.0124 (8) | 0.0007 (6) | 0.0013 (6) | 0.0005 (6) |
| N2 | 0.0124 (7) | 0.0112 (7) | 0.0120 (8) | 0.0006 (6) | 0.0008 (6) | −0.0010 (6) |
| N3 | 0.0109 (7) | 0.0114 (7) | 0.0120 (8) | −0.0005 (6) | 0.0013 (6) | −0.0006 (6) |
| C1 | 0.0190 (10) | 0.0125 (9) | 0.0162 (10) | 0.0001 (7) | 0.0019 (8) | −0.0010 (7) |
| C2 | 0.0175 (9) | 0.0177 (9) | 0.0151 (10) | 0.0032 (7) | 0.0029 (7) | −0.0031 (7) |
| C3 | 0.0142 (9) | 0.0215 (10) | 0.0113 (9) | 0.0014 (7) | 0.0017 (7) | 0.0002 (7) |
| C4 | 0.0145 (9) | 0.0155 (9) | 0.0142 (9) | 0.0001 (7) | 0.0004 (7) | 0.0017 (7) |
| C5 | 0.0127 (9) | 0.0130 (8) | 0.0107 (9) | 0.0010 (7) | 0.0003 (7) | −0.0004 (7) |
| C6 | 0.0108 (8) | 0.0141 (9) | 0.0130 (9) | 0.0002 (7) | 0.0003 (7) | 0.0008 (7) |
| C7 | 0.0229 (10) | 0.0124 (9) | 0.0169 (10) | 0.0016 (7) | 0.0070 (8) | 0.0016 (7) |
| C8 | 0.0150 (9) | 0.0109 (8) | 0.0124 (9) | −0.0008 (7) | 0.0031 (7) | −0.0010 (7) |
| C9 | 0.0145 (9) | 0.0126 (9) | 0.0126 (9) | −0.0025 (7) | 0.0007 (7) | −0.0029 (7) |
| C10 | 0.0127 (9) | 0.0155 (9) | 0.0134 (9) | 0.0024 (7) | 0.0007 (7) | 0.0033 (7) |
| C11 | 0.0160 (9) | 0.0228 (10) | 0.0134 (9) | 0.0002 (8) | 0.0021 (7) | 0.0025 (8) |
| C12 | 0.0152 (9) | 0.0194 (9) | 0.0171 (10) | 0.0013 (7) | 0.0056 (8) | −0.0004 (8) |
| C13 | 0.0099 (8) | 0.0144 (9) | 0.0148 (9) | −0.0005 (7) | 0.0009 (7) | 0.0000 (7) |
| O2 | 0.0307 (9) | 0.0231 (8) | 0.0285 (9) | 0.0035 (7) | 0.0053 (7) | −0.0013 (7) |
Geometric parameters (Å, °)
| Cu1—N2 | 1.9715 (15) | C5—C6 | 1.491 (2) |
| Cu1—N1 | 2.0290 (15) | C6—C7 | 1.490 (2) |
| Cu1—N3 | 2.0654 (15) | C7—H7A | 0.9800 |
| Cu1—Cl1 | 2.2604 (5) | C7—H7B | 0.9800 |
| Cu1—Cl2 | 2.5143 (5) | C7—H7C | 0.9800 |
| O1—C11 | 1.427 (2) | C8—C9 | 1.524 (2) |
| O1—C12 | 1.430 (2) | C8—H8A | 0.9900 |
| N1—C1 | 1.336 (2) | C8—H8B | 0.9900 |
| N1—C5 | 1.356 (2) | C9—H9A | 0.9900 |
| N2—C6 | 1.281 (2) | C9—H9B | 0.9900 |
| N2—C8 | 1.464 (2) | C10—C11 | 1.515 (3) |
| N3—C10 | 1.494 (2) | C10—H10A | 0.9900 |
| N3—C13 | 1.495 (2) | C10—H10B | 0.9900 |
| N3—C9 | 1.495 (2) | C11—H11A | 0.9900 |
| C1—C2 | 1.389 (3) | C11—H11B | 0.9900 |
| C1—H1 | 0.9500 | C12—C13 | 1.522 (3) |
| C2—C3 | 1.383 (3) | C12—H12A | 0.9900 |
| C2—H2 | 0.9500 | C12—H12B | 0.9900 |
| C3—C4 | 1.395 (3) | C13—H13A | 0.9900 |
| C3—H3 | 0.9500 | C13—H13B | 0.9900 |
| C4—C5 | 1.379 (3) | O2—H2A | 0.837 (16) |
| C4—H4 | 0.9500 | O2—H2B | 0.831 (16) |
| N2—Cu1—N1 | 79.77 (6) | C6—C7—H7B | 109.5 |
| N2—Cu1—N3 | 84.20 (6) | H7A—C7—H7B | 109.5 |
| N1—Cu1—N3 | 163.90 (6) | C6—C7—H7C | 109.5 |
| N2—Cu1—Cl1 | 154.62 (5) | H7A—C7—H7C | 109.5 |
| N1—Cu1—Cl1 | 97.01 (4) | H7B—C7—H7C | 109.5 |
| N3—Cu1—Cl1 | 96.79 (4) | N2—C8—C9 | 106.53 (14) |
| N2—Cu1—Cl2 | 95.63 (5) | N2—C8—H8A | 110.4 |
| N1—Cu1—Cl2 | 88.97 (5) | C9—C8—H8A | 110.4 |
| N3—Cu1—Cl2 | 94.20 (4) | N2—C8—H8B | 110.4 |
| Cl1—Cu1—Cl2 | 109.544 (19) | C9—C8—H8B | 110.4 |
| C11—O1—C12 | 109.02 (14) | H8A—C8—H8B | 108.6 |
| C1—N1—C5 | 118.92 (16) | N3—C9—C8 | 110.42 (14) |
| C1—N1—Cu1 | 127.12 (12) | N3—C9—H9A | 109.6 |
| C5—N1—Cu1 | 113.06 (12) | C8—C9—H9A | 109.6 |
| C6—N2—C8 | 126.51 (15) | N3—C9—H9B | 109.6 |
| C6—N2—Cu1 | 118.51 (13) | C8—C9—H9B | 109.6 |
| C8—N2—Cu1 | 114.57 (11) | H9A—C9—H9B | 108.1 |
| C10—N3—C13 | 107.88 (14) | N3—C10—C11 | 113.72 (15) |
| C10—N3—C9 | 111.29 (14) | N3—C10—H10A | 108.8 |
| C13—N3—C9 | 112.19 (14) | C11—C10—H10A | 108.8 |
| C10—N3—Cu1 | 109.42 (11) | N3—C10—H10B | 108.8 |
| C13—N3—Cu1 | 112.81 (11) | C11—C10—H10B | 108.8 |
| C9—N3—Cu1 | 103.24 (10) | H10A—C10—H10B | 107.7 |
| N1—C1—C2 | 122.40 (17) | O1—C11—C10 | 110.79 (15) |
| N1—C1—H1 | 118.8 | O1—C11—H11A | 109.5 |
| C2—C1—H1 | 118.8 | C10—C11—H11A | 109.5 |
| C3—C2—C1 | 118.62 (17) | O1—C11—H11B | 109.5 |
| C3—C2—H2 | 120.7 | C10—C11—H11B | 109.5 |
| C1—C2—H2 | 120.7 | H11A—C11—H11B | 108.1 |
| C2—C3—C4 | 119.35 (17) | O1—C12—C13 | 111.41 (15) |
| C2—C3—H3 | 120.3 | O1—C12—H12A | 109.3 |
| C4—C3—H3 | 120.3 | C13—C12—H12A | 109.3 |
| C5—C4—C3 | 118.75 (17) | O1—C12—H12B | 109.3 |
| C5—C4—H4 | 120.6 | C13—C12—H12B | 109.3 |
| C3—C4—H4 | 120.6 | H12A—C12—H12B | 108.0 |
| N1—C5—C4 | 121.95 (16) | N3—C13—C12 | 112.83 (15) |
| N1—C5—C6 | 114.30 (15) | N3—C13—H13A | 109.0 |
| C4—C5—C6 | 123.69 (16) | C12—C13—H13A | 109.0 |
| N2—C6—C7 | 126.57 (17) | N3—C13—H13B | 109.0 |
| N2—C6—C5 | 113.71 (16) | C12—C13—H13B | 109.0 |
| C7—C6—C5 | 119.70 (16) | H13A—C13—H13B | 107.8 |
| C6—C7—H7A | 109.5 | H2A—O2—H2B | 101 (2) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O2—H2A···Cl2i | 0.84 (2) | 2.35 (2) | 3.1829 (16) | 173 (2) |
| O2—H2B···Cl1 | 0.83 (2) | 2.48 (2) | 3.2841 (18) | 164 (2) |
| C2—H2···O2ii | 0.95 | 2.41 | 3.307 (2) | 156 |
| C3—H3···Cl2iii | 0.95 | 2.82 | 3.619 (2) | 142 |
| C4—H4···O2iv | 0.95 | 2.50 | 3.445 (2) | 172 |
| C7—H7A···Cl1v | 0.98 | 2.68 | 3.6179 (19) | 161 |
| C8—H8A···O1vi | 0.99 | 2.47 | 3.336 (2) | 146 |
| C10—H10B···Cl1 | 0.99 | 2.79 | 3.4496 (19) | 124 |
| C10—H10A···Cl2 | 0.99 | 2.71 | 3.3566 (19) | 123 |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, −y+1, −z; (iii) −x+2, −y+2, −z; (iv) −x+1, −y+2, −z; (v) x, y+1, z; (vi) −x+1/2, y+1/2, −z+1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: IS2674).
References
- Addison, A. W., Rao, T. N., Reedijk, J., Rijn, V. J. & Verschoor, G. C. (1984). J. Chem. Soc. Dalton Trans. pp. 1349–1356.
- Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191.
- Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
- Ikmal Hisham, N., Suleiman Gwaram, N., Khaledi, H. & Mohd Ali, H. (2010). Acta Cryst. E66, m1471. [DOI] [PMC free article] [PubMed]
- Saleh Salga, M., Khaledi, H., Mohd Ali, H. & Puteh, R. (2010). Acta Cryst. E66, m508. [DOI] [PMC free article] [PubMed]
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811004892/is2674sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004892/is2674Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report

