Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1987 Jul 24;15(14):5775–5785. doi: 10.1093/nar/15.14.5775

Theoretical study of the sequence specificity in the covalent binding of the antitumor drug CC-1065 to DNA.

K Zakrzewska, M Randrianarivelo, B Pullman
PMCID: PMC306022  PMID: 3615201

Abstract

A theoretical modelling is presented of the covalent adducts of the antitumor agent CC-1065 with B-DNA. The optimal complexes are obtained by energy minimisation, taking into account full structure flexibility, including the flexible rings of the ligand and DNA. The binding preference of CC-1065 with respect to base sequence is studied. The results obtained elucidate the origin of the preference for two AT base pairs on the 5'side of the modified adenine. The modifications of the DNA structure upon ligand covalent binding are discussed.

Full text

PDF
5775

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Arnott S., Chandrasekaran R., Birdsall D. L., Leslie A. G., Ratliff R. L. Left-handed DNA helices. Nature. 1980 Feb 21;283(5749):743–745. doi: 10.1038/283743a0. [DOI] [PubMed] [Google Scholar]
  2. Bhuyan B. K., Newell K. A., Crampton S. L., Von Hoff D. D. CC-1065 (NSC 298223), a most potent antitumor agent: kinetics of inhibition of growth, DNA synthesis, and cell survival. Cancer Res. 1982 Sep;42(9):3532–3537. [PubMed] [Google Scholar]
  3. Hanka L. J., Dietz A., Gerpheide S. A., Kuentzel S. L., Martin D. G. CC-1065 (NSC-298223), a new antitumor antibiotic. Production, in vitro biological activity, microbiological assays and taxonomy of the producing microorganism. J Antibiot (Tokyo) 1978 Dec;31(12):1211–1217. doi: 10.7164/antibiotics.31.1211. [DOI] [PubMed] [Google Scholar]
  4. Hurley L. H., Reynolds V. L., Swenson D. H., Petzold G. L., Scahill T. A. Reaction of the antitumor antibiotic CC-1065 with DNA: structure of a DNA adduct with DNA sequence specificity. Science. 1984 Nov 16;226(4676):843–844. doi: 10.1126/science.6494915. [DOI] [PubMed] [Google Scholar]
  5. Krueger W. C., Duchamp D. J., Li L. H., Moscowitz A., Petzold G. L., Prairie M. D., Swenson D. H. The binding of CC-1065 to thymidine and deoxyadenosine oligonucleotides and to poly(dA).poly(dT). Chem Biol Interact. 1986 Jul-Aug;59(1):55–72. doi: 10.1016/s0009-2797(86)80055-2. [DOI] [PubMed] [Google Scholar]
  6. Lavery R., Parker I., Kendrick J. A general approach to the optimization of the conformation of ring molecules with an application to valinomycin. J Biomol Struct Dyn. 1986 Dec;4(3):443–462. doi: 10.1080/07391102.1986.10506361. [DOI] [PubMed] [Google Scholar]
  7. Lavery R., Sklenar H., Zakrzewska K., Pullman B. The flexibility of the nucleic acids: (II). The calculation of internal energy and applications to mononucleotide repeat DNA. J Biomol Struct Dyn. 1986 Apr;3(5):989–1014. doi: 10.1080/07391102.1986.10508478. [DOI] [PubMed] [Google Scholar]
  8. Needham-VanDevanter D. R., Hurley L. H., Reynolds V. L., Theriault N. Y., Krueger W. C., Wierenga W. Characterization of an adduct between CC-1065 and a defined oligodeoxynucleotide duplex. Nucleic Acids Res. 1984 Aug 10;12(15):6159–6168. doi: 10.1093/nar/12.15.6159. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Pullman A., Pullman B. Molecular electrostatic potential of the nucleic acids. Q Rev Biophys. 1981 Aug;14(3):289–380. doi: 10.1017/s0033583500002341. [DOI] [PubMed] [Google Scholar]
  10. Pullman B., Lavery R., Pullman A. Two aspects of DNA polymorphism and microheterogeneity: molecular electrostatic potential and steric accessibility. Eur J Biochem. 1982 May 17;124(2):229–238. doi: 10.1111/j.1432-1033.1982.tb06582.x. [DOI] [PubMed] [Google Scholar]
  11. Reynolds V. L., Molineux I. J., Kaplan D. J., Swenson D. H., Hurley L. H. Reaction of the antitumor antibiotic CC-1065 with DNA. Location of the site of thermally induced strand breakage and analysis of DNA sequence specificity. Biochemistry. 1985 Oct 22;24(22):6228–6237. doi: 10.1021/bi00343a029. [DOI] [PubMed] [Google Scholar]
  12. Swenson D. H., Li L. H., Hurley L. H., Rokem J. S., Petzold G. L., Dayton B. D., Wallace T. L., Lin A. H., Krueger W. C. Mechanism of interaction of CC-1065 (NSC 298223) with DNA. Cancer Res. 1982 Jul;42(7):2821–2828. [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES