A recent article by Higgins et al. reported the identification of a novel carbapenem-hydrolyzing class D β-lactamase (CHDL), defined as OXA-143, in a carbapenem-resistant Acinetobacter baumannii strain isolated in Brazil in 2004 (5). This enzyme, which has 88% identity with OXA-40, is the first representative of a novel subgroup of CHDLs whose prevalence remains to be determined (5). In an attempt to carry out this task, we have conducted a surveillance study of carbapenem-resistant A. baumannii isolates in order to determine the antimicrobial susceptibility patterns and prevalence of blaOXA-type carbapenemase genes in medical centers in both the southeastern and southern regions of Brazil. We report here a high prevalence of carbapenem-resistant A. baumannii carrying the blaOXA-143 and blaOXA-23 genes, along with the first isolation of strains carrying the blaOXA-72 (OXA-72 is a single-amino-acid variant of OXA-40) and blaOXA-58 genes in Brazilian hospitals.
From 2004 to 2008, 36 carbapenem-resistant A. baumannii isolates recovered from different patients hospitalized in eight medical centers were screened for the presence of genes encoding metallo-β-lactamases (MβLs) and OXA-type β-lactamases (6, 15). Flanking sequences of blaOXA-type genes were characterized by PCR using primers targeting ISAba-1 or -3 (12). PCR products were confirmed by sequencing, and the genetic diversity of blaOXA-positive strains was determined by enterobacterial repetitive intergenic consensus (ERIC)-PCR analysis (11).
All isolates were found to be resistant to imipenem, meropenem, ceftazidime, aztreonam, piperacillin-tazobactam, and ciprofloxacin. Tobramycin (61.1%), ampicillin-sulbactam (61.1%), gentamicin (47.2%), amikacin (27.8%), and cefepime (11.1%) susceptibility rates were determined. MβL-encoding genes were not identified, whereas a high prevalence of blaOXA genes was noticed among carbapenem-resistant isolates (Table 1). In this regard, 21 strains (58.3%) carried the blaOXA-143 gene, 15 strains (41.7%) carried the ISAba-1/blaOXA-23 gene array, one strain carried the ISAba-3/blaOXA-58/ISAba-3 gene array, and two isolates carried the blaOXA-72 gene (GenBank accession no. FJ628170, FJ492877, FJ969387, and HM804278 to HM804281). Although the presence of the blaOXA-51 and ISAba-1 genes was confirmed in all of the isolates, no colinearity of the two genes (i.e., ISAba-1 adjacent to the blaOXA-23 gene) was observed. Isolates harboring the blaOXA-143, blaOXA-72, and blaOXA-58 genes were restricted to hospitals located in São Paulo (the largest and most populous metropolitan area in southeastern Brazil), while blaOXA-23-harboring A. baumannii isolates were obtained from hospitals in São Paulo and Paraná (in southern Brazil), confirming previous reports of widespread dissemination of OXA-23-producing A. baumannii in this region (2, 9). Finally, ERIC-PCR typing revealed genetic diversity among blaOXA-143- and blaOXA-23-positive A. baumannii isolates.
TABLE 1.
Characteristics of carbapenem-resistant A. baumannii isolates carrying blaOXA-type genes encoding class D carbapenemasesa
| Isolate | ERIC type | Hospital/stateb | Date (mo/yr) | Clinical sample | IPMc MIC (μg/ml) | blaOXA gene(s) |
|---|---|---|---|---|---|---|
| 01 | A | I/SP | 08/04 | Tracheal secretion | >64 | 51, 58d |
| 1110 | A1 | II/SP | 04/08 | Urine | 32 | 51, 23e |
| 919 | A2 | II/SP | 05/08 | Bronchoalveolar lavage fluid | 32 | 51, 23e |
| 39 | B | III/SP | 07/08 | Blood | >32 | 51, 23e |
| 80 | C | IV/SP | 08/08 | Sternal fluid | >32 | 51, 23e |
| 81 | C | IV/SP | 08/08 | Wound secretion | >32 | 51, 23,e 143 |
| 493 | D | II/SP | 08/08 | Catheter tip | 32 | 51, 23,e 143 |
| 1031 | E | II/SP | 09/08 | Urine | >64 | 51, 23,e 143 |
| 906 | E1 | II/SP | 06/08 | Biliary secretion | 32 | 51, 23e |
| 605 | F | II/SP | 08/08 | Mediastinal fluid | >64 | 51, 143 |
| 770 | F1 | II/SP | 07/08 | Urine | >64 | 51, 143 |
| 1089 | F2 | II/SP | 06/08 | Blood | >64 | 51, 143 |
| 1020 | F2 | II/SP | 09/08 | Urine | >32 | 51, 143 |
| 559 | F2 | II/SP | 09/08 | Catheter tip | >64 | 51, 143 |
| 649 | F2 | II/SP | 04/08 | Wound secretion | >64 | 51, 143 |
| 736 | F2 | II/SP | 08/08 | Wound secretion | >64 | 51, 143 |
| 824 | F2 | II/SP | 07/08 | Catheter tip | >64 | 51, 143 |
| 580 | F3 | II/SP | 06/08 | Abdominal secretion | >64 | 51, 143 |
| 1013 | F4 | II/SP | 05/08 | Urine | >64 | 51, 143 |
| 803 | F4 | II/SP | 08/08 | Tracheal secretion | 64 | 51, 143 |
| 804 | F4 | II/SP | 09/08 | Catheter tip | >64 | 51, 143 |
| 26 | G | V/SP | 08/08 | Cervical secretion | >32 | 51, 143 |
| 28 | G1 | IV/SP | 10/08 | Tracheal secretion | >64 | 51, 143 |
| 45 | G2 | VI/SP | 10/08 | Bronchoalveolar lavage fluid | >32 | 51, 143 |
| 30 | H | III/SP | 07/08 | Scar secretion | >32 | 51, 23e |
| 659 | H1 | II/SP | 04/08 | Scar secretion | >64 | 51, 143 |
| 33 | I | IV/SP | 11/08 | Catheter tip | >32 | 51, 143 |
| 55 | J | VII/PR | 01/08 | Peritoneal fluid | 16 | 51, 23e |
| 56 | J | VII/PR | 01/08 | Sputum | 16 | 51, 23e |
| 52 | J1 | VII/PR | 01/08 | Drain fluid | >32 | 51, 23e |
| 53 | J1 | VII/PR | 02/08 | Surgical fluid | 32 | 51, 23e |
| 54 | J1 | VII/PR | 12/07 | Sputum | 32 | 51, 23e |
| 3950 | K | VIIISP | 09/07 | Burn wound fluid | 32 | 51, 72 |
| 4347 | K | VIII/SP | 11/07 | Burn wound fluid | 64 | 51, 72 |
| 34 | L | V/SP | 08/08 | Catheter tip | >32 | 51, 143 |
| 46 | M | VII/PR | 08/07 | Sputum | >32 | 51, 23e |
All multidrug-resistant A. baumannii strains were included in this study. Multidrug resistance was defined as resistance to three or more representatives of the major antibiotic categories (i.e., quinolones, extended-spectrum cephalosporins, aminoglycosides, and carbapenems). The A. baumannii isolates were identified by using the Vitek 2 automated instrument ID system and conventional biochemical tests and by detection of the blaOXA-51-like gene (10, 13). Susceptibilities to all antimicrobial agents were determined by disk diffusion, agar dilution, and the Etest (AB Biodisk, Solna, Sweden) and interpreted according to criteria of the Clinical and Laboratory Standards Institute (3). ERIC-PCR fingerprint patterns were analyzed using the Dice similarity coefficient and the unweighted-pair group method using average linkages cluster method (BioNumeric software, Applied Maths, Kortrijk, Belgium).
SP, São Paulo state (southeastern Brazil); PR, Paraná state (southern Brazil).
IPM, imipenem.
Flanked by ISAba-3 (downstream) and an ISAba-3-like element (upstream).
ISAba-1 upstream of the blaOXA-23 gene.
In summary, the blaOXA-143 gene was commonly identified among the carbapenem-resistant A. baumannii isolates surveyed in this study. Also, we report the first isolation of blaOXA-72- and blaOXA-58-carrying strains in Brazilian hospitals. OXA-143 is a new subgroup of CHDL identified in isolates of A. baumannii from Brazil (5). We would only bring to mind that the blaOXA-72 gene was first reported from an A. baumannii strain in Thailand in 2004 (GenBank accession no. AY739646), and so far it has been restricted to Acinetobacter sp. isolates from Asian and Mediterranean countries (1, 4, 7, 8, 14).
Acknowledgments
FAPESP and CNPq research grants are gratefully acknowledged.
We thank Cefar Diagnóstica Ltda. (São Paulo, Brazil) for kindly supplying antibiotic discs for susceptibility testing and M. Miranda, L. B. Teresawa, C. S. Ito, M. Gaspar, C. R. Busato, and M. C. Noronha do Amaral for providing clinical isolates.
Footnotes
Published ahead of print on 13 December 2010.
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