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. 1995 Apr 25;23(8):1443–1444. doi: 10.1093/nar/23.8.1443

A new interference footprinting method for analysing simultaneously protein contacts to phosphate and guanine residues on DNA.

H Büning ¹, P A Baeuerle ¹, H Zorbas ¹

PMCID: PMC306875 PMID: 7753639

Abstract

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.

Clark L., Nicholson J., Hay R. T. Enhancer binding protein (EBP1) makes base and backbone contacts over one complete turn of the DNA double helix. J Mol Biol. 1989 Apr 20;206(4):615–626. doi: 10.1016/0022-2836(89)90570-6. [DOI] [PubMed] [Google Scholar]
Kieran M., Blank V., Logeat F., Vandekerckhove J., Lottspeich F., Le Bail O., Urban M. B., Kourilsky P., Baeuerle P. A., Israël A. The DNA binding subunit of NF-kappa B is identical to factor KBF1 and homologous to the rel oncogene product. Cell. 1990 Sep 7;62(5):1007–1018. doi: 10.1016/0092-8674(90)90275-j. [DOI] [PubMed] [Google Scholar]
Maxam A. M., Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 1980;65(1):499–560. doi: 10.1016/s0076-6879(80)65059-9. [DOI] [PubMed] [Google Scholar]
Rhaese H. J., Freese E. Chemical analysis of DNA alterations. IV. Reactions of oligodeoxynucleotides with monofunctional alkylating agents leading to backbone breakage. Biochim Biophys Acta. 1969 Oct 22;190(2):418–433. doi: 10.1016/0005-2787(69)90091-4. [DOI] [PubMed] [Google Scholar]
Sen R., Baltimore D. Inducibility of kappa immunoglobulin enhancer-binding protein Nf-kappa B by a posttranslational mechanism. Cell. 1986 Dec 26;47(6):921–928. doi: 10.1016/0092-8674(86)90807-x. [DOI] [PubMed] [Google Scholar]
Siebenlist U., Gilbert W. Contacts between Escherichia coli RNA polymerase and an early promoter of phage T7. Proc Natl Acad Sci U S A. 1980 Jan;77(1):122–126. doi: 10.1073/pnas.77.1.122. [DOI] [PMC free article] [PubMed] [Google Scholar]
Sun L., Singer B. The specificity of different classes of ethylating agents toward various sites of HeLa cell DNA in vitro and in vivo. Biochemistry. 1975 Apr 22;14(8):1795–1802. doi: 10.1021/bi00679a036. [DOI] [PubMed] [Google Scholar]
Zorbas H., Rogge L., Meisterernst M., Winnacker E. L. Hydroxyl radical footprints reveal novel structural features around the NF I binding site in adenovirus DNA. Nucleic Acids Res. 1989 Oct 11;17(19):7735–7748. doi: 10.1093/nar/17.19.7735. [DOI] [PMC free article] [PubMed] [Google Scholar]

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