Abstract
Generation of cAMP by G protein–coupled receptors (GPCRs) and its termination is currently thought to occur exclusively at the plasma membrane of cells. Under existing models of receptor regulation, this signal is primarily restricted by desensitizationof the receptors through their binding to β-arrestins. However, this paradigm is not consistent with recent observations that the parathyroid hormone receptor type 1 (PTHR) continues to stimulate cAMP production even after receptor internalization, as β-arrestins are known to rapidly bind and internalize activated PTHR. Here we show that β-arrestin1 binding prolongs rather than terminates cAMP generation by PTHR, and that cAMP generation correlates with the persistence of arrestin-receptor complexes on endosomes. We found that PTHR signaling is instead turned-off by the retromer complex, which regulates traffic of internalized receptor from endosomes to the Golgi apparatus. Thus, binding by the retromer complex regulates sustained cAMP generation triggered by an internalized GPCR.
The production of cAMP by activated GPCRs is traditionally thought to originate exclusively at the plasma membrane. In most receptors studied to date elevated cAMP is rapidly extinguished by mechanisms that desensitized activated receptors through phosphorylation by G protein receptor kinases, arrestin binding that prevents further G protein coupling and can recruit cAMP specific phosphodiesterases (PDE4D) to the plasma membrane1, and receptor endocytosis2, after which desensitized receptors are recycled to the plasma membrane or trafficked to lysosomes for degradation3. In either case, production of cAMP is not thought to continue after GPCR internalization. However, recent studies have shown that cAMP production mediated by the PTHR in response to PTH or PTH analogs continues even after internalization of the activated receptor4,5. Together with recent work on the thyroid-stimulating hormone receptor6,7, these observations indicate that a number of GPCRs continue to signal after agonist-induced internalization using a presently unknown mechanism that does not conform to existing models. These studies therefore challenge the commonly held assumption that cAMP production by GPCRs occurs and terminates terminates solely at the cytoplasmic side of the plasma membrane.
PTHR is a critical receptor for bone development and mineral ion homeostasis, and is a target for current and proposed drugs to treat bone and mineral disorders such as osteoporosis8–10. PTHR regulates these cell functions primarily by activating two types of G-protein, Gs and Gq, which in turn activate adenylyl cyclases/cAMP/PKA and phosphoplipase C/inositol phosphates (IP3)/PKC signaling cascades, respectively. Like many GPCRs, PTHR binds β-arrestins and internalizes rapidly after activation11–14. Recent evidence, however, indicates that certain PTH analogs such as M-PTH(1–28) induce prolonged physiological responses (calcemic and phosphate) in vivo5, a process thought to be associated with the capacity of PTHR to generate cAMP for many minutes after internalization of the receptor-ligand complex into early endosomes along with adenylyl cyclases and GS4,15. These data present strong evidence to question whether either arrestin-receptor binding or PTHR internalization are responsible for terminating PTH-induced cAMP production. It is also unlikely that PTHR is downregulated by degradation, as activated PTHR does not colocalize with late endosome markers4. Based on these observations, we hypothesize that an unrecognized mechanism turns off cAMP generation triggered by PTH. Here we show that retromer, a multimeric complex involved in retrograde protein transport from early endosomes to the Golgi, desensitizes cAMP generated by PTHR in response to PTH binding in both bone and kidney-derived cell lines.
RESULTS
Regulation of PTHR signaling by arrestin
Initial experiments assessed the effect of arrestin function on PTHR-mediated calcium ion (Ca2+) and cAMP responses in live cells. We first examined whether depletion of both β-arrestin1 and β-arrestin2 expression by siRNA (Supplementary Results, Supplementary Fig. 1) influences the capacity of PTH(1–34), a synthetic analog of naturally circulating PTH(1–84), to increase intracellular Ca2+ concentrations ([Ca2+]i), and cAMP production (Fig. 1a,b). Depletion of β-arrestins in human embryonic kidney (HEK293) cells stably expressing PTHR resulted in longer intracellular Ca2+ transients after a brief exposure (< 10 s) to a saturating concentration (100 nM) of PTH(1–34) (Fig. 1a). We found that the integrated calcium response was significantly increased (P < 0.05) (Fig. 1c). We next measured the time course of PTH-mediated cAMP signaling using a FRET-based biosensor, epacCFP/YFP, which has been previously described16. This cAMP biosensor displays a dynamic range of ~ 0.1–10 μM17 and its maximal response mediated by a saturating concentration of PTH (1 μM) is 92 ± 2.5% of that mediated by foskolin (10 μM). Cyclic AMP generation persisted at elevated levels for ~20 minutes after ligand washout in control cells, consistent with previous reports4,5 (Fig. 1b). The cAMP response was much shorter in cells depleted of β-arrestins (Fig. 1c), and the integrated cAMP response for 30 minutes after ligand washout was significantly reduced (P < 0.001) (Fig. 1c). These results are consistent with arrestin-mediated decoupling of PTHR-Gq signaling. However, they do not support a model in which arrestin decouples PTHR signaling via GS.
Earlier studies showed that overexpressed β-arrestins bind and mediate internalization of PTH(1–34)/PTHR complexes without inhibiting cAMP levels, although β-arrestins overexpression did block the generation of inositol phosphates (IP3)12. In agreement with this, we found that overexpressed β-arrestin1 did not shorten the generation of cAMP in response to PTH(1–34). Rather, the cAMP level lasted longer in cells overexpressing β-arrestin1 than in controls (Fig. 2a). Overexpression of β-arrestin1 did inhibit cAMP generation by the β2-adrenergic receptor (β2-AR) in response to isoproterenol (Supplementary Fig. 2), in agreement with numerous reports18–21 showing that arrestin decouples signaling by the β2-AR. These data suggest that the regulation of PTHR signaling occurs by distinct mechanisms.
PTHR/arrestin complexes and duration of cAMP signaling
The prolonged cAMP response caused by β-arrestin1 overexpression prompted us to analyze the dependence between the stability of the PTHR-arrestin complex and the duration of cAMP responses.
First, we investigated the action of N-terminal PTH analogs modified with a series of “M” substitutions (M=Ala/Aib1,Aib3,Gln10,Har11,Ala12,Trp14,Arg19) that induce longer or shorter biological response in vivo5. For this, we used HEK293 cells stably expressing PTHR and compared cAMP responses and the subcellular localization of receptor-arrestin complexes mediated by either a short-acting signaling ligand (M-PTH(1–14)), or a long-acting signaling ligand (M-PTH(1–28)). Each ligand induced a rapid and comparable elevation of cAMP as measured by FRET (Fig. 2a,b). After ligand washout, the cAMP response induced by M-PTH(1–14) returned rapidly to the basal level, whereas cAMP induced by PTH(1–34) or M-PTH(1–28) remained elevated for many minutes after ligand washout (Fig. 2a,b). The cAMP signal induced by M-PTH(1–28) was longer than that induced by PTH(1–34) (Fig. 2a), in agreement with the capacity of M-PTH(1–28) to prolong physiological responses mediated by PTHR5. We observed that cAMP response induced by PTH(1–34) or M-PTH(1–28) remained sustained at times when nearly all of PTHR-arrestin complexes visualized by GFPPTHR (GFP inserted in the PTHR’s N-terminus) and β-arr1tom (tdTomato fused to β-arr1), had internalized to endosomal domains (Fig. 2c and Supplementary Fig. 3). At comparable time points (20–40 min) PTHR-arrestin complexes induced by M-PTH(1–14) were not found in internalized compartments and arrestin was homogenously distributed in the cytosol, indicating that arrestin dissociated rapidly from PTHR after washout of M-PTH(1–14). We verified the relative stability of PTHR-arrestin complexes induced by different ligands by measuring intermolecular FRET between PTHRCFP and β-arrestin1YFP transiently expressed in HEK293 cells. Application of either PTH(1–34), M-PTH(1–14) or M-PTH(1–28) caused a rapid increase in the FRET signal (~10% elevation), which reflected the capacity of these PTHR ligands to stimulate PTHR-arrestin binding Supplementary Fig. 4b). After ligand washout, the FRET signal induced by M-PTH(1–14) rapidly diminished, whereas that induced by PTH(1–34) or M-PTH(1–28) was sustained. These data suggest that the longer elevation of cAMP observed in response to PTH(1–34) or M-PTH(1–28) is accompanied by persistent PTHR-arrestin complexes.
Second, we tested whether enhancing receptor-arrestin interactions would abbreviate or prolong the generation of cAMP. To do this, we used a mutant of β-arrestin1, I386A, V387A(hereafter noted, β-arr1[IV-AA], or β-arr1[IV-AA]tom when tagged with tdTomato), that exhibits constitutive coupling to the adaptor protein AP2 subunit of clathrin22,23 and is stabilized in an active state that has increased binding affinity for ligand-activated GPCRs23. Like β-arr1tom, β-arr1[IV-AA]tom rapidly colocalized with GFPPTHR at the plasma membrane in response to PTH(1–34) and cointernalized with the receptor to endosomes within 10–15 min (Fig. 2c and Supplementary Fig. 3). However, β-arr1[IV-AA]tom remained colocalized with PTHR on endosomes for > 45 min after removal of the ligand. At this time point the cAMP signal mediated by PTH(1–34) was decreased by 40% in control cells and by 20% in cells overexpressing β-arr1tom, but was undiminished in cells expressing β-arr1[IV-AA] tom (Fig. 2a,b). These data indicated that increasing either the expression level of β-arrestin1 or its affinity for active PTHR enhances cAMP production.
Third, we tested whether prolonged generation of cAMP corresponds to an increase or a decrease in the stability of individual arrestin-receptor complexes. For this, we used dual color fluorescence recovery after photobleaching (FRAP) to measure whether the stability of arrestin-PTHR complexes on endosomes is linked to a longer cAMP production. After inducing formation and internalization of receptor-arrestin complexes in cells coexpressing GFPPTHR and β-arr1tom with PTH(1–34), we bleached dTomato fluorescence on an endosome using a focused pulse of 561-nm laser light (Supplementary Fig. 5). Fluorescence recovery of dTomato was measured while fluorescence of GFPPTHR was used as a control to account for endosomal motion in X, Y and Z axes (Supplementary Fig. 5a). In separate experiments, tetramethylrhodamine-labeled PTH(1–34) (PTHTMR) was used as a proxy for zero recovery, since the peptide ligand is topologically restricted to the lumen of endosomes. Wild type β-arr1tom fluorescence recovered with a half-life (t1/2) of 30 ± 2.5 s (Supplementary Fig. 5b). Thus, β-arrestin1 does not remain in a stable complex with PTHR, but instead cycles rapidly between endosomal membranes and the cytoplasm. Fluorescence recovery of endosomal β-arr1[IV-AA]tom was not distinguishable from PTHTMR, indicating that β-arr1[IV-AA] formed a tight complex with activated PTHR. Arrestin-PTHR complexes induced by M-PTH(1–28), the long acting analog of PTH(1–34), showed evidence of fluorescent recovery in the dTomato channel (Supplementary Fig. 5), however, the kinetic of fluorescence recovery (t1/2 = 69 ± 4.5 s) was over three times slower (P <0.001) than that recorded for arrestin after stimulation with PTH(1–34). Two lines of evidence therefore support a model in which stabilizing the arrestin-receptor complex prolongs rather than abbreviates cAMP signaling: a mutant of β-arrestin1 with increased receptor affinity, that also induces prolonged signaling, and a prolonged signaling-biased ligand that also induces more stable receptor arrestin-complexes.
Retromer modulates PTHR signaling
To understand how cAMP generation mediated by PTH is terminated, we examined the fate of PTHR during and after dissociation of PTHR-arrestin complexes on early endosomes. By time-lapse imaging we observed that GFPPTHR localized to a perinuclear organelle that we determined to be the Golgi apparatus by colocalization with the red fluorescent Golgi apparatus marker GRASP55mCherry (Supplementary Fig. 6a) (ref.24). Much of the GFPPTHR colocalized with GRASP55mCherry within 30–40 min after a brief pulse of PTH(1–34) (Supplementary Fig. 6c). This observation is consistent with a recent report that internalized PTHR traffics to the Golgi apparatus in rat osteosarcoma cells25.
We next tested whether trafficking of PTHR to the Golgi involves retromer, a heteropentameric complex consisting of two endosomal membrane-bound sorting nexins (Snx1 and Snx2) and a soluble heterotrimer (Vps26, Vps29, and Vps35) that regulates the sorting of a variety of transmembrane proteins from early endosomes to the Golgi26–28. Overexpression of retromer subunits Vps26 and Vps35 significantly increased colocalization of GFPPTHR with the Golgi apparatus both before and after challenge with PTH(1–34) (Supplementary Fig. 4c). Conversely, depletion of the retromer subunit Vps35 using siRNA led to a marked reduction in receptor traffic to the Golgi (Supplementary Fig. 6b,c), supporting a role for retromer in sorting internalized PTHR to the Golgi.
We used a confocal microscope equipped for spectral deconvolution imaging29,30 to simultaneously localize retromer, PTHR and arrestin in live cells after PTH(1–34) stimulation. For this, we coexpressed GFPPTHR, β-arr1tom and the retromer subunit Vsp29YFP in HEK293 cells and imaged individual endosomes at high resolution (40 nm/pixel) for 40 minutes after a 30 s challenge with PTH(1–34). Before ligand addition GFPPTHR was predominantly localized at the plasma membrane, and little to no colocalization was observed between PTHR and retromer or arrestin. A few minutes (< 15 min) after ligand stimulation, most endosomes (83.4 ± 2.5%, mean ± s.e.m. of N = 5 experiments with n = 50 cells) labeled with internalized PTHR also contained both arrestin and retromer (Fig. 3a). These endosomes showed an extensive colocalization between arrestin and PTHR, but in these cases retromer did not co-localize with either PTHR or arrestin (Fig. 3a,b). At later time points (15–20 min) PTHR colocalized to a similar degree with both arrestin and retromer, whereas arrestin and retromer fluorescences remained largely distinct (Fig. 3a,b). This colocalization pattern can be clearly seen in a 3D reconstruction of an endosome taken at 20 min after ligand challenge (Supplementary Video 1). At still later time points (> 25 min) PTHR colocalized predominantly with retromer (Fig. 3b). Although arrestin and retromer typically labeled the same endosome (as determined by contiguous GFPPTHR fluorescence), we observed little to no colocalization between arrestin and retromer during the 60 min period after stimulation with PTH(1–34). This lack of overlap may be linked to a difference in phospholipid binding. It is known that retromer preferentially binds PI(3)P-enriched membrane domains31, whereas arrestin binding is enhanced in the presence of more negatively charged phospholipids such as phosphatidylinositol 3,5-biphosphates (PI(3,4)P2) (ref. 32). The transition of PTHR from arrestin- to retromer-labeled domains around 25 min after PTH(1–34) stimulation was confirmed using Pearson’s analysis (Fig. 3b). On the other hand, when coexpressed with βarr1[IV-AA]tom, GFPPTHR remained localized in arrestin-specific endosomal domains for as long as 40 min after challenge with PTH(1–34) (Fig. 3b). These changes in PTHR localization are consistent with a gradual transfer of receptor from an arrestin-labeled compartment of the endosome to a retromer-labeled compartment dedicated to sorting cargo proteins into endosome-to-Golgi retrograde transport vesicles31.
Formation of a PTHR-retromer complex was also supported by co-immunoprecipitation experiments. For this, HA-tagged PTHR (PTHRHA) and Vps29YFP were co-expressed in HEK293, and cell lysates were prepared at different time points after PTH(1–34) exposure. A low baseline interaction was detected when PTHR and retromer were coexpressed, possibly reflecting constitutive trafficking of a small fraction of PTHR33,34. This interaction increased significantly by 15–25 min after challenge with PTH (Fig. 3c and Supplementary Fig. 7), consistent with our observations using colocalization (Fig. 3a,b).
As PTHR-retromer colocalization became prominent at roughly the same time (~25 min) that cAMP desensitization was observed, we tested the hypothesis that retromer may be involved in this desensitization process. The time course of cAMP generation stimulated by PTH(1–34) in HEK293 cells stably expressing PTHR and coexpressing the FRET-based cAMP sensor epacCFP/YFP, along with retromer subunits myc-Vps26 and Vps29YFP, was much shorter in cells overexpressing retromer than in controls. Depletion of retromer by siRNA resulted in prolonged cAMP signaling comparable with overexpression of β-arr1[IV-AA] (Fig. 4a). This inverse correlation between retromer protein levels and cAMP generation by PTHR is consistent with a model in which the generation of cAMP is terminated by interaction of PTHR with retromer on endosomes. When retromer was coexpressed with β-arr1[IV-AA], PTH(1–34)-induced cAMP generation was intermediate between signaling patterns induced by expressing either protein alone (Fig. 4b). Retromer overexpression did not reduce the number or affinity of plasma membrane-localized PTH receptors in cells overexpressing retromer (Supplementary Fig. 8), and had no effect on isoproterenol-mediated cAMP in HEK293 cells expressing β2-AR (Fig. 4c), a GPCR that generates a transient cAMP response due to rapid desensitization at the plasma membrane1,19. These data rule out a non-specific role of retromer on cAMP signaling. It is therefore most likely that regulation of PTHR signaling occurs through a direct interaction between the receptor and retromer on endosomes.
We confirmed this conclusion in osteoblast-like ROS17/2.8 cells that natively express PTHR. Expression of β-arr1[IV-AA]tom in ROS17/2.8 cells significantly prolonged a PTH-stimulated cAMP response relative to control cells (Fig. 5a), whereas the cAMP response was shortened by overexpression of retromer subunits Vps26 and Vps29 (Fig. 5a). In accordance with the effect of β-arrestin on the time course of cAMP in HEK-293 cells expressing the recombinant PTHR, we observed that PTH-induced cAMP production correlates strongly with expression of βarr1tom, as measured using dTomato fluorescence (Fig. 5b).
Seminal studies showed that β-arrestins recruit cAMP-specific phosphodiesterase 4 (PDE4D) on activated β2-AR in the plasma membrane to rapidly degrade cAMP1,35. However, activated ERK2 can also phosphorylate and inhibit PDE436. It is thus possible that the sustained cAMP response observed with the PTHR-arrestin signaling system is due to the latter phenomenon, in which prolonged cAMP in PTH-stimulated cells is at least partly due to PDE4 inhibition by unusually stable receptor-arrestin complexes that prolong ERK1/2 activation. We found that the PTH(1–34)-dependent cAMP increase was prolonged by rolipram, a specific inhibitor of PDE4, and reduced by U0126, an inhibitor of MEK activation (Fig. 5c, and Supplementary Fig. 9). Additionally in ROS cells we found that PTH(1–34) induced a short decrease in ERK1/2 phosphorylation lasting less than 2 min, which is followed by a moderate increase. However, this initial decrease was followed by a significant elevation in ERK1/2 phosphorylation in cells transfected with βarr1[IV-AA] of ~3-fold over control levels (Fig. 5d and Supplementary Fig. 10). Based on these data we infer that the sustained generation of cAMP involves ERK1/2 activation.
Discussion
Our data shows that in both kidney and bone-derived cell lines, PTHR-arrestin complexes internalize to endosomes while still signaling via cAMP. Given that arrestin and G protein binding to receptors such as rhodopsin and the β2-AR are mutually exclusive20,21,37,38, the present data raise the unavoidable question of how a stable PTHR-arrestin complex can continue to produce cAMP and thus couple to GS. Our previous study shows that the interaction between Gβ1γ2 subunits and the PTHR, which is known to occur on the proximal domain of the long (132 amino acids) PTHR’s carboxy-terminal tail39,40, is maintained even when the PTH-bound receptor is internalized4. Additionally, the present data shows that β-arrestin1 forms a dynamic interaction with the PTH-PTHR complex, which nonetheless persists in endosomes for many cycles of receptor-arrestin association/dissociation. These results suggest that complexes formed through interactions between β-arrestin1 and Gβ1γ2 subunits, which are necessary for scaffolding signaling complexes41, might regulate the sustained cAMP signaling mediated by PTH by permitting multiple rounds of GαS subunit coupling and activation, or stabilizing sustained coupling with the active state of GαS. Addressing these processes will requires additional studies involving for example, the characterization of the assembly/disassembly dynamics of arrestin, and Gβγ with the receptor.
Although the mechanism of the sustained cAMP generation is not yet fully determined, our data present a new pathway for understanding how this sustained signaling is desensitized (Fig. 6). Our results shows that (1) retromer is associated with PTHR in early endosomes and shuttles it to the Golgi apparatus, (2) that retromer positively regulates the rate of retrograde endosome-to-Golgi PTHR traffic, (3) that retromer negatively regulates the duration of cAMP generation by PTHR, and finally, (4) that the relationship between retromer and β-arrestin is apparently competitive and entails a contest between signaling complexes of PTHR-arrestin and PTHR-retromer complexes that do not signal. In particular, the molecular basis for PTHR binding to retromer remains to be determined. This could be related to the structural similarity between the retromer subunit Vps26 and β-arrestins42,43, and/or the scaffolding property of the Vps35 subunit, which serves as a scaffold for the currently known cargo44 of retromer through an extended α-solenoid fold45. Potentially supporting this alternative model, a short motif (FLN) located near the C-terminus of PTHR has some similarity to a motif in the cation-independent mannose-6-phosphate receptor (WLM/FLV) that is necessary for binding Vps3546. The new role of retromer, so far limited to intracellular sorting of cargo proteins such mannose-6-phosphate receptor47, Wntless48 and polymeric immunoglobulin receptors49, has now expanded to include the regulation of the signaling and trafficking of a medically important GPCR. This model for PTHR regulation opens a new avenue to understand how the cell regulates GPCRs that generate cAMP from internal domains4,7.
METHODS
Time-lapse confocal microscopy
Cells were grown on 25 mm polylysine-coated coverslips and transferred to an Attofluor chamber (Invitrogen, Carlsbad, CA) in HEPES/BSA buffer (HEPES buffer containing 0.1 % (w/v) BSA) for imaging at room temperature. Time-lapse movies were collected with a Nikon A1s confocal microscope attached to a Ti-E inverted base using a 60× 1.49 NA plan-apo objective. To minimize fluorescent bleed-through, all images were collected with a 32-PMT (Photo Multipler Tubes) spectral detector and then processed using spectral deconvolution (Elements software, Nikon).
Fluorescence recovery after photobleaching (FRAP)
HEK293 cells expressing GFPPTHR were co-transfected with either wild-type βarrestin1tomato, βarrestin1 (IV-AA)tomato or challenged with red fluorescent PTH(1–34)TMR. Initial fluorescence of endosomes was estimated from averaging three images taken immediately before bleaching. Red fluorescence was then immediately bleached using a 561 nm laser focused on a circular region of interest (1 mm diameter) encompassing the endosome. To avoid unnecessary photo-oxidation, laser power and bleach duration was calibrated before each experiment to bleach red endosomal fluorescence by 80–90%. Images were collected at 3–5 s. intervals for as long as the bleached endosome remained within the imaging plane (as determined by GFP fluorescence; typically ~ 1 min). Imaging in the GFP channel also accounted for endosome growth due to merger or vesicle traffic and served as a non-bleaching control. Intensity data for dTomato or TMR is presented after normalization to GFP intensity for each time point.
FRET
Cells plated on poly-D-lysine-coated glass coverslips and maintained in FRET buffer were placed on a Nikon Ti-E or a Zeiss (Axiovert 200) inverted microscope equipped with an oil immersion 60×NA 1.49 plan-apo objective and a dichroic beam splitter to allow simultaneous recording of CFP and YFP fluorescence channels (DualView2, Photometrics, Tucson, AZ, or TILL photonics, Germany). The emission fluorescence intensities were determined at 535 ± 15 nm (YFP) and 480 ± 20 nm (CFP) with a beam splitter DCLP of 505 nm. The FRET ratio for single experiments was corrected according to equation (1):
(1) |
where FYFPex436/em535 and FCFPex436/em480 represent respectively the emission intensities of YFP (recorded at 535 nm) and CFP (recorded at 480 nm) upon excitation at 436 nm; a and b represent correction factors for the bleed-through of CFP into the 535 nm channel (a = 0.35) and the cross-talk due to the direct YFP excitation by light at 436 nm (b = 0.06). FYFPex500/em535 represents the emission intensity of YFP (recorded at 535 nm) upon direct excitation at 500 nm, and was recorded at the beginning of each experiment. Note that bleed-through of YFP into the 480 nm channel was negligible. For each measurement, changes in fluorescence emissions due to photobleaching were subtracted. To ensure that CFP- and YFP-labeled molecule expression were similar in examined cells, we performed experiments in cells displaying comparable fluorescence levels.
The means of FRET experiments were calculated according to equation (2), which normalizes for different expression levels of CFP and YFP molecules:
(2) |
Note that in the epac-YFP/CFP the FYFP/FCFP ratio decreases upon generation of cAMP but its represented as a positive signal just for convenience.
Image deconvolution, quantitative image analysis and statistics
Spatial deconvolution of confocal images was performed using the Huygens Professional suite (Scientific Volume Imaging, Hilversum, the Netherlands). Images for deconvolution were taken according to manufacturer recommendations: Pixel size was 40 × 40 nm in X and Y dimensions, and 100 nm in the Z-axis when 3-dimensional image series were collected. Iterative deconvolution was then performed using a theoretical point spread function (PSF) based on entered values for objective NA, oil and medium refractive index, emission wavelength and estimated signal-to-noise ratio for each fluorophore.
Colocalization (Pearson’s) was performed using integrated functions in Elements (Nikon) for raw confocal images. For spatially deconvolved endosomes, Pearson’s colocalization coefficient was analyzed per endosome, per time point using the JACoP plugin for ImageJ after auto-thresholding.
Additional methods
Information on RNAi used and details of the cell culture, quantitative real-time PCR, intracellular calcium ion measurement, Western blots and immunoprecipitation, MAP kinase assay, and competition radioligand binding experiments can be founded in the Supplementary Methods.
Supplementary Material
Acknowledgments
This work was supported by the National Institutes of Health (NIH) award R01DK087688 (to J.-P.V.). We thank J. Bonifacino for the gift of plasmids encoding retromer subunits Vps26 and Vps29YFP, and L. Traub for sharing the plasmids encoding β-arrestin1tom and β-arrestin1[I386A, V387A]tom.
Footnotes
Note: Supplementary information is available on the Nature Chemical Biology website.
Competing interests statement
The authors have no competing financial interests to disclose.
Author contributions
T.N.F performed most of the experiments with the support of V.L.W., J.A., D.S.W., S.F., and T.J.G.; J.-P.V. designed and supervised the experiments; J.-P.V. and T.N.F. analyzed the data and wrote the manuscript; all authors discussed the results and commented on the manuscript.
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